Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC012531.4-201ENST00000616509 177 ntBASIC0.1□□□□□ -2.39
COL28A1Q2UY09 MIR499B-201ENST00000636498 73 ntBASIC0.1□□□□□ -2.39
COL28A1Q2UY09 Y_RNA.207-201ENST00000364142 106 ntBASIC0.09□□□□□ -2.4
COL28A1Q2UY09 SNORA51.5-201ENST00000384126 131 ntBASIC0.09□□□□□ -2.4
COL28A1Q2UY09 MIR1302-5-201ENST00000408164 150 ntBASIC0.09□□□□□ -2.4
COL28A1Q2UY09 SNORD110-201ENST00000408189 75 ntBASIC0.09□□□□□ -2.4
COL28A1Q2UY09 RNU6-554P-201ENST00000410466 106 ntBASIC0.09□□□□□ -2.4
COL28A1Q2UY09 AC006210.1-201ENST00000424882 111 ntBASIC0.09□□□□□ -2.4
COL28A1Q2UY09 RNU6-75P-201ENST00000515944 104 ntBASIC0.09□□□□□ -2.4
COL28A1Q2UY09 Y_RNA.709-201ENST00000516952 92 ntBASIC0.09□□□□□ -2.4
COL28A1Q2UY09 AC103810.7-201ENST00000607821 91 ntBASIC0.09□□□□□ -2.4
COL28A1Q2UY09 RNU6-664P-201ENST00000362381 107 ntBASIC0.08□□□□□ -2.4
COL28A1Q2UY09 SNORD114-9-201ENST00000364370 72 ntBASIC0.08□□□□□ -2.4
COL28A1Q2UY09 SNORD101-201ENST00000384027 73 ntBASIC0.08□□□□□ -2.4
COL28A1Q2UY09 Y_RNA.457-201ENST00000384237 111 ntBASIC0.08□□□□□ -2.4
COL28A1Q2UY09 SNORA19-201ENST00000384737 128 ntBASIC0.08□□□□□ -2.4
COL28A1Q2UY09 MIR590-201ENST00000385008 97 ntBASIC0.08□□□□□ -2.4
COL28A1Q2UY09 RNU6-644P-201ENST00000391155 98 ntBASIC0.08□□□□□ -2.4
COL28A1Q2UY09 HMGN2P22-201ENST00000427588 175 ntBASIC0.08□□□□□ -2.4
COL28A1Q2UY09 MIR4696-201ENST00000581431 70 ntBASIC0.08□□□□□ -2.4
COL28A1Q2UY09 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.08□□□□□ -2.4
COL28A1Q2UY09 Y_RNA.125-201ENST00000363371 111 ntBASIC0.07□□□□□ -2.4
COL28A1Q2UY09 RNA5SP214-201ENST00000363378 118 ntBASIC0.07□□□□□ -2.4
COL28A1Q2UY09 RNU6V-201ENST00000384105 107 ntBASIC0.07□□□□□ -2.4
COL28A1Q2UY09 RNU6-1081P-201ENST00000384537 107 ntBASIC0.07□□□□□ -2.4
COL28A1Q2UY09 RNU7-85P-201ENST00000458851 63 ntBASIC0.07□□□□□ -2.4
COL28A1Q2UY09 MIR4677-201ENST00000584153 80 ntBASIC0.07□□□□□ -2.4
COL28A1Q2UY09 RNU6-161P-201ENST00000363051 106 ntBASIC0.06□□□□□ -2.4
COL28A1Q2UY09 RNU6-652P-201ENST00000365488 107 ntBASIC0.06□□□□□ -2.4
COL28A1Q2UY09 RNU6-1113P-201ENST00000384348 107 ntBASIC0.06□□□□□ -2.4
COL28A1Q2UY09 MIR610-201ENST00000385139 96 ntBASIC0.06□□□□□ -2.4
COL28A1Q2UY09 MIR643-201ENST00000385267 97 ntBASIC0.06□□□□□ -2.4
COL28A1Q2UY09 MIR892B-201ENST00000401279 77 ntBASIC0.06□□□□□ -2.4
COL28A1Q2UY09 MIR548H2-201ENST00000408874 88 ntBASIC0.06□□□□□ -2.4
COL28A1Q2UY09 Y_RNA.629-201ENST00000411368 105 ntBASIC0.06□□□□□ -2.4
COL28A1Q2UY09 AC104408.1-201ENST00000605241 170 ntBASIC0.06□□□□□ -2.4
COL28A1Q2UY09 AC069503.3-201ENST00000618674 145 ntBASIC0.06□□□□□ -2.4
COL28A1Q2UY09 MIR101-1-201ENST00000362265 75 ntBASIC0.05□□□□□ -2.4
COL28A1Q2UY09 RNU6-1325P-201ENST00000364905 105 ntBASIC0.05□□□□□ -2.4
COL28A1Q2UY09 RNY4P18-201ENST00000391107 89 ntBASIC0.05□□□□□ -2.4
COL28A1Q2UY09 SNORA25.13-201ENST00000516395 103 ntBASIC0.05□□□□□ -2.4
COL28A1Q2UY09 Y_RNA.705-201ENST00000516862 110 ntBASIC0.05□□□□□ -2.4
COL28A1Q2UY09 Y_RNA.818-201ENST00000618813 71 ntBASIC0.05□□□□□ -2.4
COL28A1Q2UY09 RNU6-766P-201ENST00000362478 107 ntBASIC0.04□□□□□ -2.4
COL28A1Q2UY09 RNU6-1290P-201ENST00000362957 109 ntBASIC0.04□□□□□ -2.4
COL28A1Q2UY09 RNU6-302P-201ENST00000365249 107 ntBASIC0.04□□□□□ -2.4
COL28A1Q2UY09 RNU6-756P-201ENST00000383997 107 ntBASIC0.04□□□□□ -2.4
COL28A1Q2UY09 MT-TY-201ENST00000387409 66 ntBASIC0.04□□□□□ -2.4
COL28A1Q2UY09 RNU6-972P-201ENST00000391208 107 ntBASIC0.04□□□□□ -2.4
COL28A1Q2UY09 Y_RNA.610-201ENST00000410681 103 ntBASIC0.04□□□□□ -2.4
COL28A1Q2UY09 Y_RNA.660-201ENST00000516002 120 ntBASIC0.04□□□□□ -2.4
COL28A1Q2UY09 RNU6-65P-201ENST00000516332 98 ntBASIC0.04□□□□□ -2.4
COL28A1Q2UY09 RNU6-109P-201ENST00000516364 107 ntBASIC0.04□□□□□ -2.4
COL28A1Q2UY09 RNU6-184P-201ENST00000516514 107 ntBASIC0.04□□□□□ -2.4
COL28A1Q2UY09 MIR4460-201ENST00000577862 86 ntBASIC0.04□□□□□ -2.4
COL28A1Q2UY09 MIR4536-1-201ENST00000583537 88 ntBASIC0.04□□□□□ -2.4
COL28A1Q2UY09 MIR3925-201ENST00000584674 77 ntBASIC0.04□□□□□ -2.4
COL28A1Q2UY09 MIR4723-201ENST00000585070 81 ntBASIC0.04□□□□□ -2.4
COL28A1Q2UY09 SNORD114-16-201ENST00000363044 70 ntBASIC0.03□□□□□ -2.4
COL28A1Q2UY09 Y_RNA.93-201ENST00000363066 109 ntBASIC0.03□□□□□ -2.4
COL28A1Q2UY09 Y_RNA.96-201ENST00000363092 109 ntBASIC0.03□□□□□ -2.4
COL28A1Q2UY09 SNORD58A-201ENST00000383875 65 ntBASIC0.03□□□□□ -2.4
COL28A1Q2UY09 RNU6-935P-201ENST00000410371 100 ntBASIC0.03□□□□□ -2.4
COL28A1Q2UY09 RNU6-887P-201ENST00000410660 100 ntBASIC0.03□□□□□ -2.4
COL28A1Q2UY09 SNORD4B-201ENST00000459083 72 ntBASIC0.03□□□□□ -2.4
COL28A1Q2UY09 MIR4667-201ENST00000578933 66 ntBASIC0.03□□□□□ -2.4
COL28A1Q2UY09 YWHAEP2-201ENST00000580066 112 ntBASIC0.03□□□□□ -2.4
COL28A1Q2UY09 MIRLET7F1-201ENST00000362202 87 ntBASIC0.02□□□□□ -2.41
COL28A1Q2UY09 Y_RNA.107-201ENST00000363190 121 ntBASIC0.02□□□□□ -2.41
COL28A1Q2UY09 Y_RNA.239-201ENST00000364444 113 ntBASIC0.02□□□□□ -2.41
COL28A1Q2UY09 MIR145-201ENST00000384967 88 ntBASIC0.02□□□□□ -2.41
COL28A1Q2UY09 MIR1468-201ENST00000410600 86 ntBASIC0.02□□□□□ -2.41
COL28A1Q2UY09 RNU7-61P-201ENST00000515897 61 ntBASIC0.02□□□□□ -2.41
COL28A1Q2UY09 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.02□□□□□ -2.41
COL28A1Q2UY09 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.02□□□□□ -2.41
COL28A1Q2UY09 U2.22-201ENST00000636441 106 ntBASIC0.02□□□□□ -2.41
COL28A1Q2UY09 SNORD114-5-201ENST00000362928 70 ntBASIC0.01□□□□□ -2.41
COL28A1Q2UY09 RNU6-755P-201ENST00000364400 103 ntBASIC0.01□□□□□ -2.41
COL28A1Q2UY09 RNU6-215P-201ENST00000365169 102 ntBASIC0.01□□□□□ -2.41
COL28A1Q2UY09 RNU6-132P-201ENST00000383863 107 ntBASIC0.01□□□□□ -2.41
COL28A1Q2UY09 MIR593-201ENST00000384856 100 ntBASIC0.01□□□□□ -2.41
COL28A1Q2UY09 MIR216B-201ENST00000390186 82 ntBASIC0.01□□□□□ -2.41
COL28A1Q2UY09 MIR876-201ENST00000401147 81 ntBASIC0.01□□□□□ -2.41
COL28A1Q2UY09 RNU5B-6P-201ENST00000516765 68 ntBASIC0.01□□□□□ -2.41
COL28A1Q2UY09 RNU6-1057P-201ENST00000517162 102 ntBASIC0.01□□□□□ -2.41
COL28A1Q2UY09 MIR4473-201ENST00000583731 91 ntBASIC0.01□□□□□ -2.41
COL28A1Q2UY09 MIR4290-201ENST00000583807 95 ntBASIC0.01□□□□□ -2.41
COL28A1Q2UY09 Y_RNA.291-201ENST00000364886 113 ntBASIC0□□□□□ -2.41
COL28A1Q2UY09 SNORD20-201ENST00000384550 80 ntBASIC0□□□□□ -2.41
COL28A1Q2UY09 MIR451A-201ENST00000385059 72 ntBASIC0□□□□□ -2.41
COL28A1Q2UY09 MIR214-201ENST00000385214 110 ntBASIC0□□□□□ -2.41
COL28A1Q2UY09 RNU6-519P-201ENST00000410590 108 ntBASIC0□□□□□ -2.41
COL28A1Q2UY09 AL031737.1-201ENST00000450125 223 ntBASIC0□□□□□ -2.41
COL28A1Q2UY09 SCARNA11.2-201ENST00000517183 154 ntBASIC0□□□□□ -2.41
COL28A1Q2UY09 MIR3064-201ENST00000581130 66 ntBASIC0□□□□□ -2.41
COL28A1Q2UY09 MIR548AE1-201ENST00000583292 70 ntBASIC0□□□□□ -2.41
COL28A1Q2UY09 MIR548O2-201ENST00000616090 70 ntBASIC0□□□□□ -2.41
COL28A1Q2UY09 DLEU2_3.1-201ENST00000620005 73 ntBASIC0□□□□□ -2.41
COL28A1Q2UY09 SNORD116-10-201ENST00000363791 102 ntBASIC-0.01□□□□□ -2.41
COL28A1Q2UY09 SNORD49B-201ENST00000365172 72 ntBASIC-0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 183.2 ms