Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AL121914.1-201ENST00000450188 156 ntBASIC-1.31□□□□□ -2.62
CHD3Q12873 Y_RNA.5-201ENST00000362334 102 ntBASIC-1.32□□□□□ -2.62
CHD3Q12873 RNU6-79P-201ENST00000362511 107 ntBASIC-1.32□□□□□ -2.62
CHD3Q12873 Y_RNA.558-201ENST00000384685 113 ntBASIC-1.32□□□□□ -2.62
CHD3Q12873 RNU6-400P-201ENST00000391173 106 ntBASIC-1.32□□□□□ -2.62
CHD3Q12873 SNORD19-201ENST00000391191 68 ntBASIC-1.32□□□□□ -2.62
CHD3Q12873 AC090616.4-201ENST00000448026 115 ntBASIC-1.32□□□□□ -2.62
CHD3Q12873 Y_RNA.155-201ENST00000363632 101 ntBASIC-1.32□□□□□ -2.62
CHD3Q12873 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.32□□□□□ -2.62
CHD3Q12873 RNU6-1009P-201ENST00000390996 107 ntBASIC-1.32□□□□□ -2.62
CHD3Q12873 MIR548Q-201ENST00000408404 100 ntBASIC-1.32□□□□□ -2.62
CHD3Q12873 RNU6-832P-201ENST00000363319 107 ntBASIC-1.33□□□□□ -2.62
CHD3Q12873 Y_RNA.346-201ENST00000365385 112 ntBASIC-1.33□□□□□ -2.62
CHD3Q12873 RNU6-493P-201ENST00000391321 108 ntBASIC-1.33□□□□□ -2.62
CHD3Q12873 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC-1.33□□□□□ -2.62
CHD3Q12873 snoU13.17-201ENST00000458802 104 ntBASIC-1.33□□□□□ -2.62
CHD3Q12873 Y_RNA.679-201ENST00000516416 91 ntBASIC-1.33□□□□□ -2.62
CHD3Q12873 AC120024.2-201ENST00000576526 175 ntBASIC-1.33□□□□□ -2.62
CHD3Q12873 MIR6844-201ENST00000637122 62 ntBASIC-1.33□□□□□ -2.62
CHD3Q12873 MIR335-201ENST00000362173 94 ntBASIC-1.33□□□□□ -2.62
CHD3Q12873 Y_RNA.292-201ENST00000364904 97 ntBASIC-1.33□□□□□ -2.62
CHD3Q12873 Y_RNA.344-201ENST00000365381 112 ntBASIC-1.33□□□□□ -2.62
CHD3Q12873 RNU6-823P-201ENST00000391042 103 ntBASIC-1.33□□□□□ -2.62
CHD3Q12873 RNU6-1234P-201ENST00000516877 103 ntBASIC-1.33□□□□□ -2.62
CHD3Q12873 MIR3121-201ENST00000579680 77 ntBASIC-1.33□□□□□ -2.62
CHD3Q12873 MIR3149-201ENST00000584629 83 ntBASIC-1.33□□□□□ -2.62
CHD3Q12873 Y_RNA.188-201ENST00000363952 111 ntBASIC-1.34□□□□□ -2.62
CHD3Q12873 Y_RNA.262-201ENST00000364641 102 ntBASIC-1.34□□□□□ -2.62
CHD3Q12873 RNU6-1051P-201ENST00000365471 102 ntBASIC-1.34□□□□□ -2.62
CHD3Q12873 Y_RNA.426-201ENST00000384068 113 ntBASIC-1.34□□□□□ -2.62
CHD3Q12873 Y_RNA.793-201ENST00000411222 111 ntBASIC-1.34□□□□□ -2.62
CHD3Q12873 MTATP6P21-201ENST00000440681 189 ntBASIC-1.34□□□□□ -2.62
CHD3Q12873 FGF7P6-202ENST00000451282 293 ntBASIC-1.34□□□□□ -2.62
CHD3Q12873 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-1.34□□□□□ -2.62
CHD3Q12873 RNU6-983P-201ENST00000516004 103 ntBASIC-1.34□□□□□ -2.62
CHD3Q12873 MIR3163-201ENST00000581592 73 ntBASIC-1.34□□□□□ -2.62
CHD3Q12873 Y_RNA.183-201ENST00000363882 113 ntBASIC-1.35□□□□□ -2.63
CHD3Q12873 RNU6-540P-201ENST00000384622 101 ntBASIC-1.35□□□□□ -2.63
CHD3Q12873 RNU6-246P-201ENST00000384702 107 ntBASIC-1.35□□□□□ -2.63
CHD3Q12873 MIR487B-201ENST00000385021 84 ntBASIC-1.35□□□□□ -2.63
CHD3Q12873 RNA5SP292-201ENST00000390974 118 ntBASIC-1.35□□□□□ -2.63
CHD3Q12873 Y_RNA.613-201ENST00000410726 97 ntBASIC-1.35□□□□□ -2.63
CHD3Q12873 RNU6-1143P-201ENST00000516125 104 ntBASIC-1.35□□□□□ -2.63
CHD3Q12873 SNORD116.3-201ENST00000517176 78 ntBASIC-1.35□□□□□ -2.63
CHD3Q12873 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC-1.35□□□□□ -2.63
CHD3Q12873 RNU6-326P-201ENST00000365480 107 ntBASIC-1.35□□□□□ -2.63
CHD3Q12873 SNORA24B-201ENST00000384176 131 ntBASIC-1.35□□□□□ -2.63
CHD3Q12873 Y_RNA.527-201ENST00000384573 102 ntBASIC-1.35□□□□□ -2.63
CHD3Q12873 RNU2-38P-201ENST00000410856 79 ntBASIC-1.35□□□□□ -2.63
CHD3Q12873 AL035461.1-201ENST00000421490 332 ntBASIC-1.35□□□□□ -2.63
CHD3Q12873 MIR3646-201ENST00000578301 84 ntBASIC-1.35□□□□□ -2.63
CHD3Q12873 MIR5683-201ENST00000636514 76 ntBASIC-1.35□□□□□ -2.63
CHD3Q12873 RNU6-450P-201ENST00000364654 107 ntBASIC-1.36□□□□□ -2.63
CHD3Q12873 MT-TL1-201ENST00000386347 75 ntBASIC-1.36□□□□□ -2.63
CHD3Q12873 MTND3P22-201ENST00000510932 243 ntBASIC-1.36□□□□□ -2.63
CHD3Q12873 RNU5F-1-201ENST00000362507 117 ntBASIC-1.37□□□□□ -2.63
CHD3Q12873 SNORD18.1-201ENST00000363807 70 ntBASIC-1.37□□□□□ -2.63
CHD3Q12873 Y_RNA.197-201ENST00000364004 102 ntBASIC-1.37□□□□□ -2.63
CHD3Q12873 RNU6-409P-201ENST00000384114 104 ntBASIC-1.37□□□□□ -2.63
CHD3Q12873 RNA5SP86-201ENST00000390869 98 ntBASIC-1.37□□□□□ -2.63
CHD3Q12873 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-1.37□□□□□ -2.63
CHD3Q12873 AC108019.1-201ENST00000512540 175 ntBASIC-1.37□□□□□ -2.63
CHD3Q12873 RNU6-1262P-201ENST00000516217 96 ntBASIC-1.37□□□□□ -2.63
CHD3Q12873 RNU7-6P-201ENST00000516845 62 ntBASIC-1.37□□□□□ -2.63
CHD3Q12873 MIR4282-201ENST00000583613 67 ntBASIC-1.37□□□□□ -2.63
CHD3Q12873 Y_RNA.651-201ENST00000459380 103 ntBASIC-1.37□□□□□ -2.63
CHD3Q12873 FGF7P7-201ENST00000514120 227 ntBASIC-1.37□□□□□ -2.63
CHD3Q12873 Y_RNA.797-201ENST00000515977 94 ntBASIC-1.37□□□□□ -2.63
CHD3Q12873 RNY3P16-201ENST00000516338 101 ntBASIC-1.37□□□□□ -2.63
CHD3Q12873 RNU6-1271P-201ENST00000517049 105 ntBASIC-1.37□□□□□ -2.63
CHD3Q12873 MIR4643-201ENST00000577473 78 ntBASIC-1.37□□□□□ -2.63
CHD3Q12873 MIR4756-201ENST00000577874 78 ntBASIC-1.37□□□□□ -2.63
CHD3Q12873 FAS-AS1.1-201ENST00000615327 126 ntBASIC-1.37□□□□□ -2.63
CHD3Q12873 RNU6-238P-201ENST00000363313 106 ntBASIC-1.38□□□□□ -2.63
CHD3Q12873 Y_RNA.348-201ENST00000365403 103 ntBASIC-1.38□□□□□ -2.63
CHD3Q12873 RNU6-841P-201ENST00000383872 107 ntBASIC-1.38□□□□□ -2.63
CHD3Q12873 Y_RNA.401-201ENST00000383965 117 ntBASIC-1.38□□□□□ -2.63
CHD3Q12873 MIR1302-11-201ENST00000408051 138 ntBASIC-1.38□□□□□ -2.63
CHD3Q12873 MIR1302-9-201ENST00000408365 138 ntBASIC-1.38□□□□□ -2.63
CHD3Q12873 MIR1302-10-201ENST00000408734 138 ntBASIC-1.38□□□□□ -2.63
CHD3Q12873 MIR1302-2-201ENST00000607096 138 ntBASIC-1.38□□□□□ -2.63
CHD3Q12873 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC-1.38□□□□□ -2.63
CHD3Q12873 RNU6-770P-201ENST00000363929 105 ntBASIC-1.39□□□□□ -2.63
CHD3Q12873 Y_RNA.210-201ENST00000364161 110 ntBASIC-1.39□□□□□ -2.63
CHD3Q12873 Y_RNA.213-201ENST00000364178 111 ntBASIC-1.39□□□□□ -2.63
CHD3Q12873 RNU6-382P-201ENST00000365181 106 ntBASIC-1.39□□□□□ -2.63
CHD3Q12873 MIR548F1-201ENST00000408667 84 ntBASIC-1.39□□□□□ -2.63
CHD3Q12873 AC005520.4-201ENST00000604337 90 ntBASIC-1.39□□□□□ -2.63
CHD3Q12873 AL160413.1-201ENST00000622780 310 ntBASIC-1.39□□□□□ -2.63
CHD3Q12873 Y_RNA.75-201ENST00000362927 97 ntBASIC-1.39□□□□□ -2.63
CHD3Q12873 RNU6-1289P-201ENST00000384431 106 ntBASIC-1.39□□□□□ -2.63
CHD3Q12873 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.39□□□□□ -2.63
CHD3Q12873 RNU6-630P-201ENST00000391258 106 ntBASIC-1.39□□□□□ -2.63
CHD3Q12873 MTND3P2-201ENST00000438452 342 ntBASIC-1.39□□□□□ -2.63
CHD3Q12873 SNORD4B-201ENST00000459083 72 ntBASIC-1.39□□□□□ -2.63
CHD3Q12873 RNU6-976P-201ENST00000516086 111 ntBASIC-1.39□□□□□ -2.63
CHD3Q12873 Y_RNA.686-201ENST00000516548 134 ntBASIC-1.39□□□□□ -2.63
CHD3Q12873 RNU6-1153P-201ENST00000516760 105 ntBASIC-1.39□□□□□ -2.63
CHD3Q12873 SNORA40.15-201ENST00000516884 107 ntBASIC-1.39□□□□□ -2.63
CHD3Q12873 MIR548I1-201ENST00000408810 149 ntBASIC-1.4□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 172.4 ms