Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC087343.1-201ENST00000477341 475 ntBASIC1.02□□□□□ -2.25
RNF4P78317 AL078603.1-201ENST00000603824 313 ntBASIC1.02□□□□□ -2.25
RNF4P78317 U6.81-201ENST00000612550 106 ntBASIC1.02□□□□□ -2.25
RNF4P78317 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.02□□□□□ -2.25
RNF4P78317 MIR4773-1-201ENST00000637203 78 ntBASIC1.02□□□□□ -2.25
RNF4P78317 RNU2-59P-201ENST00000410482 191 ntBASIC1.01□□□□□ -2.25
RNF4P78317 RNA5SP268-201ENST00000516828 124 ntBASIC1.01□□□□□ -2.25
RNF4P78317 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.01□□□□□ -2.25
RNF4P78317 RNU6-330P-201ENST00000363015 107 ntBASIC1□□□□□ -2.25
RNF4P78317 RNU6-54P-201ENST00000365563 107 ntBASIC1□□□□□ -2.25
RNF4P78317 RNU6-154P-201ENST00000384306 106 ntBASIC1□□□□□ -2.25
RNF4P78317 AC074348.1-201ENST00000426503 132 ntBASIC1□□□□□ -2.25
RNF4P78317 ACA64.5-201ENST00000516207 127 ntBASIC1□□□□□ -2.25
RNF4P78317 MIR3134-201ENST00000579433 74 ntBASIC1□□□□□ -2.25
RNF4P78317 MIR6828-201ENST00000636181 60 ntBASIC1□□□□□ -2.25
RNF4P78317 MIR1297-201ENST00000637311 77 ntBASIC1□□□□□ -2.25
RNF4P78317 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1□□□□□ -2.25
RNF4P78317 RNU6-382P-201ENST00000365181 106 ntBASIC0.99□□□□□ -2.25
RNF4P78317 MIR216B-201ENST00000390186 82 ntBASIC0.99□□□□□ -2.25
RNF4P78317 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.99□□□□□ -2.25
RNF4P78317 MIR7107-201ENST00000611489 80 ntBASIC0.99□□□□□ -2.25
RNF4P78317 FAS-AS1.1-201ENST00000615327 126 ntBASIC0.99□□□□□ -2.25
RNF4P78317 MIR548O2-201ENST00000616090 70 ntBASIC0.99□□□□□ -2.25
RNF4P78317 MIR664A-201ENST00000626086 82 ntBASIC0.99□□□□□ -2.25
RNF4P78317 RNU6-1187P-201ENST00000364771 110 ntBASIC0.98□□□□□ -2.25
RNF4P78317 RNU6V-201ENST00000384105 107 ntBASIC0.98□□□□□ -2.25
RNF4P78317 MIR608-201ENST00000384820 100 ntBASIC0.98□□□□□ -2.25
RNF4P78317 RNA5SP484-201ENST00000458857 111 ntBASIC0.98□□□□□ -2.25
RNF4P78317 MIR4460-201ENST00000577862 86 ntBASIC0.98□□□□□ -2.25
RNF4P78317 SNORD114-21-201ENST00000606412 72 ntBASIC0.98□□□□□ -2.25
RNF4P78317 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.98□□□□□ -2.25
RNF4P78317 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
RNF4P78317 SNORA8.1-201ENST00000384250 140 ntBASIC0.97□□□□□ -2.25
RNF4P78317 Y_RNA.565-201ENST00000384719 101 ntBASIC0.97□□□□□ -2.25
RNF4P78317 Y_RNA.606-201ENST00000410579 103 ntBASIC0.97□□□□□ -2.25
RNF4P78317 AC093423.1-201ENST00000440817 142 ntBASIC0.97□□□□□ -2.25
RNF4P78317 Y_RNA.676-201ENST00000516393 96 ntBASIC0.97□□□□□ -2.25
RNF4P78317 RNA5SP102-201ENST00000516865 106 ntBASIC0.97□□□□□ -2.25
RNF4P78317 MIR8070-201ENST00000616510 88 ntBASIC0.97□□□□□ -2.25
RNF4P78317 AL162376.1-201ENST00000624117 175 ntBASIC0.97□□□□□ -2.25
RNF4P78317 RNU6-681P-201ENST00000364012 104 ntBASIC0.96□□□□□ -2.26
RNF4P78317 RNU1-141P-201ENST00000364623 158 ntBASIC0.96□□□□□ -2.26
RNF4P78317 MIR140-201ENST00000385282 100 ntBASIC0.96□□□□□ -2.26
RNF4P78317 RPL39P28-201ENST00000465655 155 ntBASIC0.96□□□□□ -2.26
RNF4P78317 NAMPTP3-201ENST00000569273 224 ntBASIC0.96□□□□□ -2.26
RNF4P78317 Y_RNA.36-201ENST00000362602 112 ntBASIC0.95□□□□□ -2.26
RNF4P78317 RNU6-274P-201ENST00000459566 107 ntBASIC0.95□□□□□ -2.26
RNF4P78317 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
RNF4P78317 RNA5SP517-201ENST00000364724 117 ntBASIC0.94□□□□□ -2.26
RNF4P78317 SNORA8.2-201ENST00000384372 139 ntBASIC0.94□□□□□ -2.26
RNF4P78317 Y_RNA.545-201ENST00000384652 105 ntBASIC0.94□□□□□ -2.26
RNF4P78317 MIR1276-201ENST00000408707 83 ntBASIC0.94□□□□□ -2.26
RNF4P78317 RNU6-70P-201ENST00000516438 60 ntBASIC0.94□□□□□ -2.26
RNF4P78317 SNORA25.18-201ENST00000607153 114 ntBASIC0.94□□□□□ -2.26
RNF4P78317 SNORD114-27-201ENST00000363766 70 ntBASIC0.93□□□□□ -2.26
RNF4P78317 RNU4-38P-201ENST00000364472 129 ntBASIC0.93□□□□□ -2.26
RNF4P78317 MT-TY-201ENST00000387409 66 ntBASIC0.93□□□□□ -2.26
RNF4P78317 SNORD75.2-201ENST00000408784 58 ntBASIC0.93□□□□□ -2.26
RNF4P78317 Y_RNA.681-201ENST00000516445 113 ntBASIC0.93□□□□□ -2.26
RNF4P78317 MIR4752-201ENST00000579672 72 ntBASIC0.93□□□□□ -2.26
RNF4P78317 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.93□□□□□ -2.26
RNF4P78317 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.92□□□□□ -2.26
RNF4P78317 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.92□□□□□ -2.26
RNF4P78317 RNU5B-6P-201ENST00000516765 68 ntBASIC0.92□□□□□ -2.26
RNF4P78317 AC103810.9-201ENST00000606688 112 ntBASIC0.92□□□□□ -2.26
RNF4P78317 MIR96-201ENST00000362288 78 ntBASIC0.91□□□□□ -2.26
RNF4P78317 RNU6-495P-201ENST00000362995 107 ntBASIC0.91□□□□□ -2.26
RNF4P78317 PSMC1P5-201ENST00000512850 177 ntBASIC0.91□□□□□ -2.26
RNF4P78317 AC092634.7-201ENST00000621022 103 ntBASIC0.91□□□□□ -2.26
RNF4P78317 RNU6-411P-201ENST00000384451 107 ntBASIC0.9□□□□□ -2.27
RNF4P78317 SNORD42B-201ENST00000458893 67 ntBASIC0.9□□□□□ -2.27
RNF4P78317 MIR6504-201ENST00000613520 61 ntBASIC0.9□□□□□ -2.27
RNF4P78317 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC0.89□□□□□ -2.27
RNF4P78317 AC006210.1-201ENST00000424882 111 ntBASIC0.89□□□□□ -2.27
RNF4P78317 AL691482.2-201ENST00000457453 84 ntBASIC0.89□□□□□ -2.27
RNF4P78317 AC211469.2-201ENST00000605461 205 ntBASIC0.89□□□□□ -2.27
RNF4P78317 MIR203A-201ENST00000384836 110 ntBASIC0.88□□□□□ -2.27
RNF4P78317 MIR499A-201ENST00000384903 122 ntBASIC0.88□□□□□ -2.27
RNF4P78317 RNU6-523P-201ENST00000516304 54 ntBASIC0.88□□□□□ -2.27
RNF4P78317 RNU6-1015P-201ENST00000517121 99 ntBASIC0.88□□□□□ -2.27
RNF4P78317 AC018659.1-201ENST00000551083 169 ntBASIC0.88□□□□□ -2.27
RNF4P78317 MIR3675-201ENST00000583661 73 ntBASIC0.88□□□□□ -2.27
RNF4P78317 SNORA70.25-201ENST00000612741 95 ntBASIC0.88□□□□□ -2.27
RNF4P78317 MIR6767-201ENST00000637302 66 ntBASIC0.88□□□□□ -2.27
RNF4P78317 AC073869.9-201ENST00000641610 120 ntBASIC0.88□□□□□ -2.27
RNF4P78317 RNU1-93P-201ENST00000364704 169 ntBASIC0.87□□□□□ -2.27
RNF4P78317 MIR532-201ENST00000385025 91 ntBASIC0.87□□□□□ -2.27
RNF4P78317 AC069271.1-201ENST00000445577 156 ntBASIC0.87□□□□□ -2.27
RNF4P78317 RNU7-24P-201ENST00000458867 62 ntBASIC0.87□□□□□ -2.27
RNF4P78317 AC069503.3-201ENST00000618674 145 ntBASIC0.87□□□□□ -2.27
RNF4P78317 RNU6-587P-201ENST00000391282 106 ntBASIC0.86□□□□□ -2.27
RNF4P78317 MIR4473-201ENST00000583731 91 ntBASIC0.86□□□□□ -2.27
RNF4P78317 MIR6509-201ENST00000614603 85 ntBASIC0.86□□□□□ -2.27
RNF4P78317 SNORD114-22-201ENST00000365423 72 ntBASIC0.85□□□□□ -2.27
RNF4P78317 RNU6-1039P-201ENST00000383931 107 ntBASIC0.85□□□□□ -2.27
RNF4P78317 RNU6-1241P-201ENST00000384536 107 ntBASIC0.85□□□□□ -2.27
RNF4P78317 SNORD110-201ENST00000408189 75 ntBASIC0.85□□□□□ -2.27
RNF4P78317 RNU6-752P-201ENST00000516376 102 ntBASIC0.85□□□□□ -2.27
RNF4P78317 MIR6857-201ENST00000613267 93 ntBASIC0.85□□□□□ -2.27
RNF4P78317 Y_RNA.226-201ENST00000364337 114 ntBASIC0.84□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 172.2 ms