Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MIR6718-201ENST00000616153 80 ntBASIC0.24□□□□□ -2.37
HDAC4P56524 Y_RNA.93-201ENST00000363066 109 ntBASIC0.23□□□□□ -2.37
HDAC4P56524 RNU6-509P-201ENST00000363519 107 ntBASIC0.23□□□□□ -2.37
HDAC4P56524 SNORD101-201ENST00000384027 73 ntBASIC0.23□□□□□ -2.37
HDAC4P56524 RNU6-44P-201ENST00000384045 107 ntBASIC0.23□□□□□ -2.37
HDAC4P56524 RNU6-887P-201ENST00000410660 100 ntBASIC0.23□□□□□ -2.37
HDAC4P56524 AL035461.1-201ENST00000421490 332 ntBASIC0.23□□□□□ -2.37
HDAC4P56524 HMGN2P22-201ENST00000427588 175 ntBASIC0.23□□□□□ -2.37
HDAC4P56524 MIR5706-201ENST00000579841 80 ntBASIC0.23□□□□□ -2.37
HDAC4P56524 RNU6-972P-201ENST00000391208 107 ntBASIC0.22□□□□□ -2.37
HDAC4P56524 Z95118.1-201ENST00000421372 247 ntBASIC0.22□□□□□ -2.37
HDAC4P56524 SNORD4B-201ENST00000459083 72 ntBASIC0.22□□□□□ -2.37
HDAC4P56524 RNU7-74P-201ENST00000459104 62 ntBASIC0.22□□□□□ -2.37
HDAC4P56524 MIR5190-201ENST00000581537 80 ntBASIC0.22□□□□□ -2.37
HDAC4P56524 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.22□□□□□ -2.37
HDAC4P56524 MIR499B-201ENST00000636498 73 ntBASIC0.22□□□□□ -2.37
HDAC4P56524 RNU6-132P-201ENST00000383863 107 ntBASIC0.21□□□□□ -2.38
HDAC4P56524 RNU6-127P-201ENST00000390897 107 ntBASIC0.21□□□□□ -2.38
HDAC4P56524 SNORD110-201ENST00000408189 75 ntBASIC0.21□□□□□ -2.38
HDAC4P56524 RNU7-129P-201ENST00000516128 62 ntBASIC0.21□□□□□ -2.38
HDAC4P56524 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.21□□□□□ -2.38
HDAC4P56524 MIR4315-1-201ENST00000636800 73 ntBASIC0.21□□□□□ -2.38
HDAC4P56524 MIR4315-2-201ENST00000640925 73 ntBASIC0.21□□□□□ -2.38
HDAC4P56524 MIRLET7F1-201ENST00000362202 87 ntBASIC0.2□□□□□ -2.38
HDAC4P56524 RNA5SP98-201ENST00000363158 137 ntBASIC0.2□□□□□ -2.38
HDAC4P56524 RNU6-147P-201ENST00000383983 107 ntBASIC0.2□□□□□ -2.38
HDAC4P56524 MTATP8P2-201ENST00000435212 202 ntBASIC0.2□□□□□ -2.38
HDAC4P56524 RNU6-158P-201ENST00000517104 100 ntBASIC0.2□□□□□ -2.38
HDAC4P56524 MIR4536-1-201ENST00000583537 88 ntBASIC0.2□□□□□ -2.38
HDAC4P56524 MIR548AD-201ENST00000584780 82 ntBASIC0.2□□□□□ -2.38
HDAC4P56524 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.19□□□□□ -2.38
HDAC4P56524 Y_RNA.544-201ENST00000384650 113 ntBASIC0.19□□□□□ -2.38
HDAC4P56524 MIR548H2-201ENST00000408874 88 ntBASIC0.19□□□□□ -2.38
HDAC4P56524 AC006210.1-201ENST00000424882 111 ntBASIC0.19□□□□□ -2.38
HDAC4P56524 MIR4768-201ENST00000585270 74 ntBASIC0.19□□□□□ -2.38
HDAC4P56524 U7.3-201ENST00000616123 62 ntBASIC0.19□□□□□ -2.38
HDAC4P56524 Y_RNA.185-201ENST00000363894 100 ntBASIC0.18□□□□□ -2.38
HDAC4P56524 RNU6-162P-201ENST00000516228 103 ntBASIC0.18□□□□□ -2.38
HDAC4P56524 RNU6-65P-201ENST00000516332 98 ntBASIC0.18□□□□□ -2.38
HDAC4P56524 U7.6-201ENST00000610841 64 ntBASIC0.18□□□□□ -2.38
HDAC4P56524 AP001318.4-201ENST00000616637 121 ntBASIC0.18□□□□□ -2.38
HDAC4P56524 Y_RNA.125-201ENST00000363371 111 ntBASIC0.17□□□□□ -2.38
HDAC4P56524 Y_RNA.290-201ENST00000364879 114 ntBASIC0.17□□□□□ -2.38
HDAC4P56524 RNY4P3-201ENST00000365254 95 ntBASIC0.17□□□□□ -2.38
HDAC4P56524 RNU6-935P-201ENST00000410371 100 ntBASIC0.17□□□□□ -2.38
HDAC4P56524 RNA5SP25-201ENST00000410815 110 ntBASIC0.17□□□□□ -2.38
HDAC4P56524 MIR4677-201ENST00000584153 80 ntBASIC0.17□□□□□ -2.38
HDAC4P56524 RNU6-161P-201ENST00000363051 106 ntBASIC0.16□□□□□ -2.38
HDAC4P56524 SNORA42.1-201ENST00000363515 137 ntBASIC0.16□□□□□ -2.38
HDAC4P56524 Y_RNA.190-201ENST00000363964 101 ntBASIC0.16□□□□□ -2.38
HDAC4P56524 MT-TY-201ENST00000387409 66 ntBASIC0.16□□□□□ -2.38
HDAC4P56524 AC026421.1-201ENST00000519101 163 ntBASIC0.16□□□□□ -2.38
HDAC4P56524 MIR3064-201ENST00000581130 66 ntBASIC0.16□□□□□ -2.38
HDAC4P56524 MIR4802-201ENST00000581881 80 ntBASIC0.16□□□□□ -2.38
HDAC4P56524 MIR3925-201ENST00000584674 77 ntBASIC0.16□□□□□ -2.38
HDAC4P56524 AC069503.3-201ENST00000618674 145 ntBASIC0.16□□□□□ -2.38
HDAC4P56524 Y_RNA.96-201ENST00000363092 109 ntBASIC0.15□□□□□ -2.39
HDAC4P56524 SNORD116-10-201ENST00000363791 102 ntBASIC0.15□□□□□ -2.39
HDAC4P56524 Y_RNA.348-201ENST00000365403 103 ntBASIC0.15□□□□□ -2.39
HDAC4P56524 RNU6-519P-201ENST00000410590 108 ntBASIC0.15□□□□□ -2.39
HDAC4P56524 MIR371B-201ENST00000638082 66 ntBASIC0.15□□□□□ -2.39
HDAC4P56524 Y_RNA.239-201ENST00000364444 113 ntBASIC0.14□□□□□ -2.39
HDAC4P56524 MIR451A-201ENST00000385059 72 ntBASIC0.14□□□□□ -2.39
HDAC4P56524 MIR643-201ENST00000385267 97 ntBASIC0.14□□□□□ -2.39
HDAC4P56524 MIR1295A-201ENST00000408463 79 ntBASIC0.14□□□□□ -2.39
HDAC4P56524 RNU6-782P-201ENST00000516852 104 ntBASIC0.14□□□□□ -2.39
HDAC4P56524 MIR4460-201ENST00000577862 86 ntBASIC0.14□□□□□ -2.39
HDAC4P56524 YWHAEP2-201ENST00000580066 112 ntBASIC0.14□□□□□ -2.39
HDAC4P56524 RNA5SP292-201ENST00000390974 118 ntBASIC0.13□□□□□ -2.39
HDAC4P56524 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.13□□□□□ -2.39
HDAC4P56524 SNORA25.13-201ENST00000516395 103 ntBASIC0.13□□□□□ -2.39
HDAC4P56524 RNU5B-6P-201ENST00000516765 68 ntBASIC0.13□□□□□ -2.39
HDAC4P56524 MIR548AE1-201ENST00000583292 70 ntBASIC0.13□□□□□ -2.39
HDAC4P56524 AC104996.3-201ENST00000590718 94 ntBASIC0.13□□□□□ -2.39
HDAC4P56524 AC104408.1-201ENST00000605241 170 ntBASIC0.13□□□□□ -2.39
HDAC4P56524 MIR548O2-201ENST00000616090 70 ntBASIC0.13□□□□□ -2.39
HDAC4P56524 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.13□□□□□ -2.39
HDAC4P56524 RNA5SP214-201ENST00000363378 118 ntBASIC0.12□□□□□ -2.39
HDAC4P56524 RNU6-640P-201ENST00000363693 105 ntBASIC0.12□□□□□ -2.39
HDAC4P56524 SNORD114-9-201ENST00000364370 72 ntBASIC0.12□□□□□ -2.39
HDAC4P56524 RNU6-905P-201ENST00000384434 107 ntBASIC0.12□□□□□ -2.39
HDAC4P56524 Y_RNA.495-201ENST00000384435 112 ntBASIC0.12□□□□□ -2.39
HDAC4P56524 SNORD90-201ENST00000391145 111 ntBASIC0.12□□□□□ -2.39
HDAC4P56524 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.12□□□□□ -2.39
HDAC4P56524 RNU6-758P-201ENST00000516292 89 ntBASIC0.12□□□□□ -2.39
HDAC4P56524 IGLVI-20-201ENST00000519296 130 ntBASIC0.12□□□□□ -2.39
HDAC4P56524 MIR4473-201ENST00000583731 91 ntBASIC0.12□□□□□ -2.39
HDAC4P56524 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.12□□□□□ -2.39
HDAC4P56524 SNORD114-15-201ENST00000364687 72 ntBASIC0.11□□□□□ -2.39
HDAC4P56524 RNU6-30P-201ENST00000384561 107 ntBASIC0.11□□□□□ -2.39
HDAC4P56524 Y_RNA.609-201ENST00000410669 89 ntBASIC0.11□□□□□ -2.39
HDAC4P56524 RNU6-32P-201ENST00000383948 107 ntBASIC0.1□□□□□ -2.39
HDAC4P56524 RNU6-811P-201ENST00000384069 107 ntBASIC0.1□□□□□ -2.39
HDAC4P56524 RNU6-13P-201ENST00000384248 107 ntBASIC0.1□□□□□ -2.39
HDAC4P56524 RNU6-12P-201ENST00000384604 107 ntBASIC0.1□□□□□ -2.39
HDAC4P56524 RNU6-41P-201ENST00000384741 107 ntBASIC0.1□□□□□ -2.39
HDAC4P56524 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.09□□□□□ -2.39
HDAC4P56524 RNU6-652P-201ENST00000365488 107 ntBASIC0.09□□□□□ -2.4
HDAC4P56524 MIR488-201ENST00000365739 83 ntBASIC0.09□□□□□ -2.4
HDAC4P56524 MIR610-201ENST00000385139 96 ntBASIC0.09□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 256.7 ms