Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNU6-881P-201ENST00000516813 102 ntBASIC-0.79□□□□□ -2.54
FOXA1P55317 MIR5704-201ENST00000584029 77 ntBASIC-0.79□□□□□ -2.54
FOXA1P55317 MTND5P18-201ENST00000445624 1801 ntBASIC-0.8□□□□□ -2.54
FOXA1P55317 Y_RNA.420-201ENST00000384043 110 ntBASIC-0.8□□□□□ -2.54
FOXA1P55317 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.8□□□□□ -2.54
FOXA1P55317 Y_RNA.489-201ENST00000384410 101 ntBASIC-0.8□□□□□ -2.54
FOXA1P55317 Y_RNA.568-201ENST00000384742 113 ntBASIC-0.8□□□□□ -2.54
FOXA1P55317 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.8□□□□□ -2.54
FOXA1P55317 MTND3P2-201ENST00000438452 342 ntBASIC-0.8□□□□□ -2.54
FOXA1P55317 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.8□□□□□ -2.54
FOXA1P55317 SCARNA20.2-201ENST00000516052 116 ntBASIC-0.8□□□□□ -2.54
FOXA1P55317 RNU6-1045P-201ENST00000516321 107 ntBASIC-0.8□□□□□ -2.54
FOXA1P55317 RNU6-719P-201ENST00000516671 104 ntBASIC-0.8□□□□□ -2.54
FOXA1P55317 RNU6-1271P-201ENST00000517049 105 ntBASIC-0.8□□□□□ -2.54
FOXA1P55317 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-0.8□□□□□ -2.54
FOXA1P55317 MIR3179-1-201ENST00000578940 84 ntBASIC-0.8□□□□□ -2.54
FOXA1P55317 MIR3179-2-201ENST00000579107 84 ntBASIC-0.8□□□□□ -2.54
FOXA1P55317 MIR3179-3-201ENST00000579566 84 ntBASIC-0.8□□□□□ -2.54
FOXA1P55317 MIR3179-4-201ENST00000617599 84 ntBASIC-0.8□□□□□ -2.54
FOXA1P55317 AC025521.1-201ENST00000621624 286 ntBASIC-0.8□□□□□ -2.54
FOXA1P55317 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.81□□□□□ -2.54
FOXA1P55317 Y_RNA.163-201ENST00000363702 113 ntBASIC-0.81□□□□□ -2.54
FOXA1P55317 Y_RNA.377-201ENST00000365644 108 ntBASIC-0.81□□□□□ -2.54
FOXA1P55317 SNORD116-18-201ENST00000383961 92 ntBASIC-0.81□□□□□ -2.54
FOXA1P55317 RNY1P7-201ENST00000384743 110 ntBASIC-0.81□□□□□ -2.54
FOXA1P55317 MIR196A1-201ENST00000388006 70 ntBASIC-0.81□□□□□ -2.54
FOXA1P55317 RNU6-721P-201ENST00000410155 105 ntBASIC-0.81□□□□□ -2.54
FOXA1P55317 RNU6-65P-201ENST00000516332 98 ntBASIC-0.81□□□□□ -2.54
FOXA1P55317 MIR548X2-201ENST00000579776 100 ntBASIC-0.81□□□□□ -2.54
FOXA1P55317 MIR4536-1-201ENST00000583537 88 ntBASIC-0.81□□□□□ -2.54
FOXA1P55317 U7.2-201ENST00000607576 63 ntBASIC-0.81□□□□□ -2.54
FOXA1P55317 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.81□□□□□ -2.54
FOXA1P55317 MIR577-201ENST00000385196 96 ntBASIC-0.82□□□□□ -2.54
FOXA1P55317 Y_RNA.580-201ENST00000391004 95 ntBASIC-0.82□□□□□ -2.54
FOXA1P55317 FGF7P7-201ENST00000514120 227 ntBASIC-0.82□□□□□ -2.54
FOXA1P55317 SNORD22.1-201ENST00000516331 125 ntBASIC-0.82□□□□□ -2.54
FOXA1P55317 AC025166.1-201ENST00000612411 163 ntBASIC-0.82□□□□□ -2.54
FOXA1P55317 RNU6-200P-201ENST00000364743 107 ntBASIC-0.83□□□□□ -2.54
FOXA1P55317 SNORD50.2-201ENST00000365465 70 ntBASIC-0.83□□□□□ -2.54
FOXA1P55317 SNORD57-201ENST00000448188 72 ntBASIC-0.83□□□□□ -2.54
FOXA1P55317 MIR6854-201ENST00000614935 69 ntBASIC-0.83□□□□□ -2.54
FOXA1P55317 Y_RNA.162-201ENST00000363683 102 ntBASIC-0.84□□□□□ -2.54
FOXA1P55317 RNU4-36P-201ENST00000364294 144 ntBASIC-0.84□□□□□ -2.54
FOXA1P55317 SNORD58C-201ENST00000365223 64 ntBASIC-0.84□□□□□ -2.54
FOXA1P55317 RNU7-85P-201ENST00000458851 63 ntBASIC-0.84□□□□□ -2.54
FOXA1P55317 MIR8068-201ENST00000618032 68 ntBASIC-0.84□□□□□ -2.54
FOXA1P55317 Y_RNA.29-201ENST00000362570 113 ntBASIC-0.85□□□□□ -2.55
FOXA1P55317 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.85□□□□□ -2.55
FOXA1P55317 RNU6-394P-201ENST00000410735 107 ntBASIC-0.85□□□□□ -2.55
FOXA1P55317 SNX3P1X-201ENST00000414887 175 ntBASIC-0.85□□□□□ -2.55
FOXA1P55317 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.85□□□□□ -2.55
FOXA1P55317 SCARNA15.1-201ENST00000516384 125 ntBASIC-0.85□□□□□ -2.55
FOXA1P55317 RNU6-1061P-201ENST00000516530 99 ntBASIC-0.85□□□□□ -2.55
FOXA1P55317 MIR4694-201ENST00000578534 80 ntBASIC-0.85□□□□□ -2.55
FOXA1P55317 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-0.85□□□□□ -2.55
FOXA1P55317 MIR6773-201ENST00000612812 74 ntBASIC-0.85□□□□□ -2.55
FOXA1P55317 snoR1.1-201ENST00000628177 80 ntBASIC-0.85□□□□□ -2.55
FOXA1P55317 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.86□□□□□ -2.55
FOXA1P55317 MIR587-201ENST00000384845 96 ntBASIC-0.86□□□□□ -2.55
FOXA1P55317 AL513043.2-201ENST00000573941 143 ntBASIC-0.86□□□□□ -2.55
FOXA1P55317 Y_RNA.8-201ENST00000362353 102 ntBASIC-0.87□□□□□ -2.55
FOXA1P55317 RNU6-694P-201ENST00000364071 147 ntBASIC-0.87□□□□□ -2.55
FOXA1P55317 SNORA63.6-201ENST00000364921 119 ntBASIC-0.87□□□□□ -2.55
FOXA1P55317 Y_RNA.309-201ENST00000365046 111 ntBASIC-0.87□□□□□ -2.55
FOXA1P55317 RNU6-132P-201ENST00000383863 107 ntBASIC-0.87□□□□□ -2.55
FOXA1P55317 RNU6-804P-201ENST00000384286 107 ntBASIC-0.87□□□□□ -2.55
FOXA1P55317 MIR517B-201ENST00000385102 67 ntBASIC-0.87□□□□□ -2.55
FOXA1P55317 MIR569-201ENST00000385228 96 ntBASIC-0.87□□□□□ -2.55
FOXA1P55317 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.87□□□□□ -2.55
FOXA1P55317 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.87□□□□□ -2.55
FOXA1P55317 AP000533.3-201ENST00000447704 118 ntBASIC-0.87□□□□□ -2.55
FOXA1P55317 AC022137.1-201ENST00000483735 151 ntBASIC-0.87□□□□□ -2.55
FOXA1P55317 Y_RNA.700-201ENST00000516806 100 ntBASIC-0.87□□□□□ -2.55
FOXA1P55317 AC004792.1-201ENST00000614523 137 ntBASIC-0.87□□□□□ -2.55
FOXA1P55317 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.88□□□□□ -2.55
FOXA1P55317 SNORA63.2-201ENST00000362603 126 ntBASIC-0.88□□□□□ -2.55
FOXA1P55317 RNU6-832P-201ENST00000363319 107 ntBASIC-0.88□□□□□ -2.55
FOXA1P55317 RNU6-379P-201ENST00000363813 104 ntBASIC-0.88□□□□□ -2.55
FOXA1P55317 SNORD74.6-201ENST00000364796 70 ntBASIC-0.88□□□□□ -2.55
FOXA1P55317 Y_RNA.400-201ENST00000383963 111 ntBASIC-0.88□□□□□ -2.55
FOXA1P55317 RNU6-463P-201ENST00000384340 107 ntBASIC-0.88□□□□□ -2.55
FOXA1P55317 MIRLET7B-201ENST00000385140 83 ntBASIC-0.88□□□□□ -2.55
FOXA1P55317 SNORD83B-201ENST00000386745 93 ntBASIC-0.88□□□□□ -2.55
FOXA1P55317 RNU6-592P-201ENST00000411333 103 ntBASIC-0.88□□□□□ -2.55
FOXA1P55317 MIR3140-201ENST00000583685 90 ntBASIC-0.88□□□□□ -2.55
FOXA1P55317 RNU6-495P-201ENST00000362995 107 ntBASIC-0.89□□□□□ -2.55
FOXA1P55317 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.89□□□□□ -2.55
FOXA1P55317 Y_RNA.398-201ENST00000383952 99 ntBASIC-0.89□□□□□ -2.55
FOXA1P55317 RNU6-1250P-201ENST00000391218 107 ntBASIC-0.89□□□□□ -2.55
FOXA1P55317 RNU6-337P-201ENST00000391243 106 ntBASIC-0.89□□□□□ -2.55
FOXA1P55317 RNU6ATAC23P-201ENST00000408448 123 ntBASIC-0.89□□□□□ -2.55
FOXA1P55317 RNA5SP272-201ENST00000516095 111 ntBASIC-0.89□□□□□ -2.55
FOXA1P55317 MIR3144-201ENST00000579460 79 ntBASIC-0.89□□□□□ -2.55
FOXA1P55317 AL035470.1-201ENST00000622571 220 ntBASIC-0.89□□□□□ -2.55
FOXA1P55317 RNY3P2-201ENST00000362918 102 ntBASIC-0.9□□□□□ -2.55
FOXA1P55317 Y_RNA.346-201ENST00000365385 112 ntBASIC-0.9□□□□□ -2.55
FOXA1P55317 RNU6-905P-201ENST00000384434 107 ntBASIC-0.9□□□□□ -2.55
FOXA1P55317 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-0.9□□□□□ -2.55
FOXA1P55317 MIR548U-201ENST00000390728 81 ntBASIC-0.9□□□□□ -2.55
FOXA1P55317 Y_RNA.630-201ENST00000411370 108 ntBASIC-0.9□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 175.7 ms