Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 Y_RNA.437-201ENST00000384113 113 ntBASIC0.67□□□□□ -2.3
HOXD9P28356 MIR451A-201ENST00000385059 72 ntBASIC0.67□□□□□ -2.3
HOXD9P28356 MIR519E-201ENST00000385075 84 ntBASIC0.67□□□□□ -2.3
HOXD9P28356 MIR216B-201ENST00000390186 82 ntBASIC0.67□□□□□ -2.3
HOXD9P28356 SNORD90-201ENST00000391145 111 ntBASIC0.67□□□□□ -2.3
HOXD9P28356 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.67□□□□□ -2.3
HOXD9P28356 RNU6-1057P-201ENST00000517162 102 ntBASIC0.67□□□□□ -2.3
HOXD9P28356 PVT1_3.1-201ENST00000620853 95 ntBASIC0.67□□□□□ -2.3
HOXD9P28356 MIR146A-201ENST00000385201 99 ntBASIC0.66□□□□□ -2.3
HOXD9P28356 FGF7P7-201ENST00000514120 227 ntBASIC0.66□□□□□ -2.3
HOXD9P28356 Y_RNA.660-201ENST00000516002 120 ntBASIC0.66□□□□□ -2.3
HOXD9P28356 Y_RNA.685-201ENST00000516532 108 ntBASIC0.66□□□□□ -2.3
HOXD9P28356 RNA5SP268-201ENST00000516828 124 ntBASIC0.66□□□□□ -2.3
HOXD9P28356 RNU6-228P-201ENST00000362700 106 ntBASIC0.65□□□□□ -2.31
HOXD9P28356 Y_RNA.313-201ENST00000365095 103 ntBASIC0.65□□□□□ -2.31
HOXD9P28356 RNU6-1124P-201ENST00000384169 107 ntBASIC0.65□□□□□ -2.31
HOXD9P28356 SNORA24B-201ENST00000384176 131 ntBASIC0.65□□□□□ -2.31
HOXD9P28356 MIR140-201ENST00000385282 100 ntBASIC0.65□□□□□ -2.31
HOXD9P28356 MIR548L-201ENST00000408303 86 ntBASIC0.65□□□□□ -2.31
HOXD9P28356 AC093423.1-201ENST00000440817 142 ntBASIC0.65□□□□□ -2.31
HOXD9P28356 RNA5SP395-201ENST00000516567 118 ntBASIC0.65□□□□□ -2.31
HOXD9P28356 AL162376.1-201ENST00000624117 175 ntBASIC0.65□□□□□ -2.31
HOXD9P28356 RNU6-315P-201ENST00000362666 107 ntBASIC0.64□□□□□ -2.31
HOXD9P28356 RNU6-652P-201ENST00000365488 107 ntBASIC0.64□□□□□ -2.31
HOXD9P28356 RNU6-716P-201ENST00000365621 103 ntBASIC0.64□□□□□ -2.31
HOXD9P28356 SNORA8.2-201ENST00000384372 139 ntBASIC0.64□□□□□ -2.31
HOXD9P28356 MIR598-201ENST00000384868 97 ntBASIC0.64□□□□□ -2.31
HOXD9P28356 RNU6-129P-201ENST00000391022 107 ntBASIC0.64□□□□□ -2.31
HOXD9P28356 RNA5SP227-201ENST00000516184 113 ntBASIC0.64□□□□□ -2.31
HOXD9P28356 MIR3140-201ENST00000583685 90 ntBASIC0.64□□□□□ -2.31
HOXD9P28356 RNU6-478P-201ENST00000363904 110 ntBASIC0.63□□□□□ -2.31
HOXD9P28356 Y_RNA.264-201ENST00000364665 102 ntBASIC0.63□□□□□ -2.31
HOXD9P28356 SNORA36.2-201ENST00000384004 127 ntBASIC0.63□□□□□ -2.31
HOXD9P28356 Y_RNA.540-201ENST00000384638 111 ntBASIC0.63□□□□□ -2.31
HOXD9P28356 RNU6-269P-201ENST00000391077 97 ntBASIC0.63□□□□□ -2.31
HOXD9P28356 RNU6-1275P-201ENST00000391087 107 ntBASIC0.63□□□□□ -2.31
HOXD9P28356 AL450471.1-201ENST00000447509 127 ntBASIC0.63□□□□□ -2.31
HOXD9P28356 snoU13.17-201ENST00000458802 104 ntBASIC0.63□□□□□ -2.31
HOXD9P28356 MIR7107-201ENST00000611489 80 ntBASIC0.63□□□□□ -2.31
HOXD9P28356 MIR6513-201ENST00000621188 64 ntBASIC0.63□□□□□ -2.31
HOXD9P28356 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.63□□□□□ -2.31
HOXD9P28356 RNU5F-1-201ENST00000362507 117 ntBASIC0.62□□□□□ -2.31
HOXD9P28356 RNA5SP517-201ENST00000364724 117 ntBASIC0.62□□□□□ -2.31
HOXD9P28356 RNY1P8-201ENST00000383970 114 ntBASIC0.62□□□□□ -2.31
HOXD9P28356 SNORD77.2-201ENST00000391045 68 ntBASIC0.62□□□□□ -2.31
HOXD9P28356 MIR1255A-201ENST00000408338 113 ntBASIC0.62□□□□□ -2.31
HOXD9P28356 Y_RNA.94-201ENST00000363068 106 ntBASIC0.61□□□□□ -2.31
HOXD9P28356 RNU6-686P-201ENST00000364839 107 ntBASIC0.61□□□□□ -2.31
HOXD9P28356 RNU6-279P-201ENST00000391297 101 ntBASIC0.61□□□□□ -2.31
HOXD9P28356 RNU2-59P-201ENST00000410482 191 ntBASIC0.61□□□□□ -2.31
HOXD9P28356 RNU6-1052P-201ENST00000411398 104 ntBASIC0.61□□□□□ -2.31
HOXD9P28356 RNU6-719P-201ENST00000516671 104 ntBASIC0.61□□□□□ -2.31
HOXD9P28356 MIR548O2-201ENST00000616090 70 ntBASIC0.61□□□□□ -2.31
HOXD9P28356 MIRLET7A1-201ENST00000362295 80 ntBASIC0.6□□□□□ -2.31
HOXD9P28356 RNU6-208P-201ENST00000362431 107 ntBASIC0.6□□□□□ -2.31
HOXD9P28356 RNU6-161P-201ENST00000363051 106 ntBASIC0.6□□□□□ -2.31
HOXD9P28356 SNORD118-201ENST00000363593 134 ntBASIC0.6□□□□□ -2.31
HOXD9P28356 RNA5SP499-201ENST00000363982 119 ntBASIC0.6□□□□□ -2.31
HOXD9P28356 RNU1-141P-201ENST00000364623 158 ntBASIC0.6□□□□□ -2.31
HOXD9P28356 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC0.6□□□□□ -2.31
HOXD9P28356 MIR4712-201ENST00000583750 82 ntBASIC0.6□□□□□ -2.31
HOXD9P28356 AC092634.7-201ENST00000621022 103 ntBASIC0.6□□□□□ -2.31
HOXD9P28356 MT-TY-201ENST00000387409 66 ntBASIC0.59□□□□□ -2.31
HOXD9P28356 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.59□□□□□ -2.31
HOXD9P28356 SNORA40.8-201ENST00000411034 126 ntBASIC0.59□□□□□ -2.31
HOXD9P28356 AC097510.1-201ENST00000510945 133 ntBASIC0.59□□□□□ -2.31
HOXD9P28356 AC073869.9-201ENST00000641610 120 ntBASIC0.59□□□□□ -2.31
HOXD9P28356 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.59□□□□□ -2.32
HOXD9P28356 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.32
HOXD9P28356 Y_RNA.606-201ENST00000410579 103 ntBASIC0.58□□□□□ -2.32
HOXD9P28356 RNU6-1108P-201ENST00000516308 104 ntBASIC0.58□□□□□ -2.32
HOXD9P28356 YWHAEP2-201ENST00000580066 112 ntBASIC0.58□□□□□ -2.32
HOXD9P28356 YWHAEP3-201ENST00000582767 121 ntBASIC0.58□□□□□ -2.32
HOXD9P28356 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
HOXD9P28356 RNA5SP347-201ENST00000362445 119 ntBASIC0.57□□□□□ -2.32
HOXD9P28356 RNU6-1177P-201ENST00000391058 104 ntBASIC0.57□□□□□ -2.32
HOXD9P28356 RNU4-54P-201ENST00000516428 129 ntBASIC0.57□□□□□ -2.32
HOXD9P28356 RNA5SP121-201ENST00000516537 101 ntBASIC0.57□□□□□ -2.32
HOXD9P28356 MIR518A1-201ENST00000385068 85 ntBASIC0.56□□□□□ -2.32
HOXD9P28356 MIR92A1-201ENST00000385233 78 ntBASIC0.56□□□□□ -2.32
HOXD9P28356 MIR936-201ENST00000401264 98 ntBASIC0.56□□□□□ -2.32
HOXD9P28356 RNU6-380P-201ENST00000410207 107 ntBASIC0.56□□□□□ -2.32
HOXD9P28356 RNA5SP484-201ENST00000458857 111 ntBASIC0.56□□□□□ -2.32
HOXD9P28356 AC018659.1-201ENST00000551083 169 ntBASIC0.56□□□□□ -2.32
HOXD9P28356 MIR4460-201ENST00000577862 86 ntBASIC0.56□□□□□ -2.32
HOXD9P28356 AC069503.3-201ENST00000618674 145 ntBASIC0.56□□□□□ -2.32
HOXD9P28356 RNU6-1094P-201ENST00000362416 104 ntBASIC0.55□□□□□ -2.32
HOXD9P28356 RNU6-824P-201ENST00000363724 104 ntBASIC0.55□□□□□ -2.32
HOXD9P28356 RNU6-24P-201ENST00000384440 107 ntBASIC0.55□□□□□ -2.32
HOXD9P28356 AC098934.3-201ENST00000430450 190 ntBASIC0.55□□□□□ -2.32
HOXD9P28356 RNU7-24P-201ENST00000458867 62 ntBASIC0.55□□□□□ -2.32
HOXD9P28356 RNU6-857P-201ENST00000515893 110 ntBASIC0.55□□□□□ -2.32
HOXD9P28356 RNU6-848P-201ENST00000515948 107 ntBASIC0.55□□□□□ -2.32
HOXD9P28356 RNU6-617P-201ENST00000516147 107 ntBASIC0.55□□□□□ -2.32
HOXD9P28356 RNU6-473P-201ENST00000516164 107 ntBASIC0.55□□□□□ -2.32
HOXD9P28356 RNU6-1049P-201ENST00000516414 107 ntBASIC0.55□□□□□ -2.32
HOXD9P28356 U6.81-201ENST00000612550 106 ntBASIC0.55□□□□□ -2.32
HOXD9P28356 Y_RNA.12-201ENST00000362393 112 ntBASIC0.54□□□□□ -2.32
HOXD9P28356 RNU6-495P-201ENST00000362995 107 ntBASIC0.54□□□□□ -2.32
HOXD9P28356 RNU6-340P-201ENST00000364005 107 ntBASIC0.54□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 169.1 ms