Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RNU6-907P-201ENST00000390924 102 ntBASIC-0.53□□□□□ -2.49
SDC1P18827 Y_RNA.601-201ENST00000410500 113 ntBASIC-0.53□□□□□ -2.49
SDC1P18827 SNORD126-201ENST00000459475 77 ntBASIC-0.53□□□□□ -2.49
SDC1P18827 RNU6-659P-201ENST00000516454 104 ntBASIC-0.53□□□□□ -2.49
SDC1P18827 MIR4802-201ENST00000581881 80 ntBASIC-0.53□□□□□ -2.49
SDC1P18827 MIR4536-1-201ENST00000583537 88 ntBASIC-0.53□□□□□ -2.49
SDC1P18827 MIR4439-201ENST00000583746 80 ntBASIC-0.53□□□□□ -2.49
SDC1P18827 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.53□□□□□ -2.49
SDC1P18827 SNORD45B-201ENST00000364617 72 ntBASIC-0.54□□□□□ -2.5
SDC1P18827 MIR9-2-201ENST00000384838 87 ntBASIC-0.54□□□□□ -2.5
SDC1P18827 SNORA49-201ENST00000386157 136 ntBASIC-0.54□□□□□ -2.5
SDC1P18827 RNU6-762P-201ENST00000517107 102 ntBASIC-0.54□□□□□ -2.5
SDC1P18827 AP000676.1-201ENST00000533307 52 ntBASIC-0.54□□□□□ -2.5
SDC1P18827 U6.95-201ENST00000636931 70 ntBASIC-0.54□□□□□ -2.5
SDC1P18827 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.55□□□□□ -2.5
SDC1P18827 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.55□□□□□ -2.5
SDC1P18827 SNORA32.3-201ENST00000384772 121 ntBASIC-0.55□□□□□ -2.5
SDC1P18827 MIR548A3-201ENST00000385297 97 ntBASIC-0.55□□□□□ -2.5
SDC1P18827 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.55□□□□□ -2.5
SDC1P18827 U3.27-201ENST00000391237 200 ntBASIC-0.55□□□□□ -2.5
SDC1P18827 uc_338.36-201ENST00000622331 158 ntBASIC-0.55□□□□□ -2.5
SDC1P18827 Y_RNA.71-201ENST00000362892 104 ntBASIC-0.56□□□□□ -2.5
SDC1P18827 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.56□□□□□ -2.5
SDC1P18827 Y_RNA.467-201ENST00000384297 102 ntBASIC-0.56□□□□□ -2.5
SDC1P18827 MIR196A2-201ENST00000385189 110 ntBASIC-0.56□□□□□ -2.5
SDC1P18827 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.56□□□□□ -2.5
SDC1P18827 AC103810.7-201ENST00000607821 91 ntBASIC-0.56□□□□□ -2.5
SDC1P18827 AC145423.2-201ENST00000610631 239 ntBASIC-0.56□□□□□ -2.5
SDC1P18827 MIR548AZ-201ENST00000616567 95 ntBASIC-0.56□□□□□ -2.5
SDC1P18827 MIR582-201ENST00000365731 98 ntBASIC-0.57□□□□□ -2.5
SDC1P18827 RNU6-132P-201ENST00000383863 107 ntBASIC-0.57□□□□□ -2.5
SDC1P18827 RNU6-813P-201ENST00000384691 107 ntBASIC-0.57□□□□□ -2.5
SDC1P18827 AP001180.6-201ENST00000584918 159 ntBASIC-0.57□□□□□ -2.5
SDC1P18827 Y_RNA.563-201ENST00000384707 108 ntBASIC-0.58□□□□□ -2.5
SDC1P18827 RNU6-644P-201ENST00000391155 98 ntBASIC-0.58□□□□□ -2.5
SDC1P18827 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.58□□□□□ -2.5
SDC1P18827 FGF7P7-201ENST00000514120 227 ntBASIC-0.58□□□□□ -2.5
SDC1P18827 RNU6-719P-201ENST00000516671 104 ntBASIC-0.58□□□□□ -2.5
SDC1P18827 RNA5SP66-201ENST00000517178 101 ntBASIC-0.58□□□□□ -2.5
SDC1P18827 MIR5589-201ENST00000579442 60 ntBASIC-0.58□□□□□ -2.5
SDC1P18827 MIR548Z-201ENST00000584743 97 ntBASIC-0.58□□□□□ -2.5
SDC1P18827 SNORD115-25-201ENST00000362619 82 ntBASIC-0.59□□□□□ -2.5
SDC1P18827 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.59□□□□□ -2.5
SDC1P18827 MIR548E-201ENST00000408287 88 ntBASIC-0.59□□□□□ -2.5
SDC1P18827 SNORD42B-201ENST00000458893 67 ntBASIC-0.59□□□□□ -2.5
SDC1P18827 Y_RNA.281-201ENST00000364774 94 ntBASIC-0.6□□□□□ -2.51
SDC1P18827 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.6□□□□□ -2.51
SDC1P18827 RNU6-209P-201ENST00000384118 107 ntBASIC-0.6□□□□□ -2.51
SDC1P18827 RNU6-900P-201ENST00000384498 102 ntBASIC-0.6□□□□□ -2.51
SDC1P18827 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.6□□□□□ -2.51
SDC1P18827 MIR548I1-201ENST00000408810 149 ntBASIC-0.6□□□□□ -2.51
SDC1P18827 Y_RNA.681-201ENST00000516445 113 ntBASIC-0.6□□□□□ -2.51
SDC1P18827 MIR4777-201ENST00000583710 86 ntBASIC-0.6□□□□□ -2.51
SDC1P18827 AC097510.1-201ENST00000510945 133 ntBASIC-0.61□□□□□ -2.51
SDC1P18827 RNU6-795P-201ENST00000516323 103 ntBASIC-0.61□□□□□ -2.51
SDC1P18827 MIR3064-201ENST00000581130 66 ntBASIC-0.61□□□□□ -2.51
SDC1P18827 MIR4432-201ENST00000581823 84 ntBASIC-0.61□□□□□ -2.51
SDC1P18827 MIR4636-201ENST00000582271 80 ntBASIC-0.61□□□□□ -2.51
SDC1P18827 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.62□□□□□ -2.51
SDC1P18827 SNORD114-4-201ENST00000363962 75 ntBASIC-0.62□□□□□ -2.51
SDC1P18827 RNU4-36P-201ENST00000364294 144 ntBASIC-0.62□□□□□ -2.51
SDC1P18827 SNORD116-14-201ENST00000383894 92 ntBASIC-0.62□□□□□ -2.51
SDC1P18827 SNORD116-17-201ENST00000383929 92 ntBASIC-0.62□□□□□ -2.51
SDC1P18827 RNU6-1014P-201ENST00000383940 103 ntBASIC-0.62□□□□□ -2.51
SDC1P18827 SNORD116-15-201ENST00000384445 92 ntBASIC-0.62□□□□□ -2.51
SDC1P18827 SNORD116-19-201ENST00000384729 92 ntBASIC-0.62□□□□□ -2.51
SDC1P18827 SNORD4B-201ENST00000459083 72 ntBASIC-0.62□□□□□ -2.51
SDC1P18827 MIR3133-201ENST00000583157 78 ntBASIC-0.62□□□□□ -2.51
SDC1P18827 AC012531.4-201ENST00000616509 177 ntBASIC-0.62□□□□□ -2.51
SDC1P18827 RNU6-880P-201ENST00000384526 107 ntBASIC-0.63□□□□□ -2.51
SDC1P18827 SNORD56B-201ENST00000384713 71 ntBASIC-0.63□□□□□ -2.51
SDC1P18827 MIR548U-201ENST00000390728 81 ntBASIC-0.63□□□□□ -2.51
SDC1P18827 RNU6-284P-201ENST00000411105 106 ntBASIC-0.63□□□□□ -2.51
SDC1P18827 AL445193.1-201ENST00000441183 141 ntBASIC-0.63□□□□□ -2.51
SDC1P18827 AC114755.3-201ENST00000481111 251 ntBASIC-0.63□□□□□ -2.51
SDC1P18827 Y_RNA.703-201ENST00000516846 111 ntBASIC-0.63□□□□□ -2.51
SDC1P18827 MIR3140-201ENST00000583685 90 ntBASIC-0.63□□□□□ -2.51
SDC1P18827 AC104996.3-201ENST00000590718 94 ntBASIC-0.63□□□□□ -2.51
SDC1P18827 SNORA63.2-201ENST00000362603 126 ntBASIC-0.64□□□□□ -2.51
SDC1P18827 RPS29P8-201ENST00000445109 171 ntBASIC-0.64□□□□□ -2.51
SDC1P18827 snoU13.13-201ENST00000458842 104 ntBASIC-0.64□□□□□ -2.51
SDC1P18827 SNORD2-201ENST00000459163 69 ntBASIC-0.64□□□□□ -2.51
SDC1P18827 RNU7-55P-201ENST00000459426 62 ntBASIC-0.64□□□□□ -2.51
SDC1P18827 MIR3671-201ENST00000580455 88 ntBASIC-0.64□□□□□ -2.51
SDC1P18827 MIR4493-201ENST00000584016 73 ntBASIC-0.64□□□□□ -2.51
SDC1P18827 AC093726.3-201ENST00000637588 150 ntBASIC-0.64□□□□□ -2.51
SDC1P18827 MIR101-1-201ENST00000362265 75 ntBASIC-0.65□□□□□ -2.51
SDC1P18827 RNU6-1107P-201ENST00000364817 104 ntBASIC-0.65□□□□□ -2.51
SDC1P18827 SNORD116-21-201ENST00000384507 92 ntBASIC-0.65□□□□□ -2.51
SDC1P18827 RNU6-901P-201ENST00000384593 106 ntBASIC-0.65□□□□□ -2.51
SDC1P18827 RNU6-519P-201ENST00000410590 108 ntBASIC-0.65□□□□□ -2.51
SDC1P18827 SNORA19.1-201ENST00000410656 129 ntBASIC-0.65□□□□□ -2.51
SDC1P18827 RNU6-774P-201ENST00000363238 107 ntBASIC-0.66□□□□□ -2.52
SDC1P18827 Y_RNA.491-201ENST00000384417 107 ntBASIC-0.66□□□□□ -2.52
SDC1P18827 SNORA40.17-201ENST00000517256 115 ntBASIC-0.66□□□□□ -2.52
SDC1P18827 AL391099.1-201ENST00000624635 187 ntBASIC-0.66□□□□□ -2.52
SDC1P18827 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-0.66□□□□□ -2.52
SDC1P18827 RNU6-704P-201ENST00000364162 103 ntBASIC-0.67□□□□□ -2.52
SDC1P18827 SNORA24B-201ENST00000384176 131 ntBASIC-0.67□□□□□ -2.52
SDC1P18827 RNA5SP292-201ENST00000390974 118 ntBASIC-0.67□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 200.6 ms