Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 Y_RNA.202-201ENST00000364083 110 ntBASIC-1.95□□□□□ -2.72
LIMS3P0CW19 MIR29B1-201ENST00000385015 81 ntBASIC-1.95□□□□□ -2.72
LIMS3P0CW19 RNU6-239P-201ENST00000390990 99 ntBASIC-1.95□□□□□ -2.72
LIMS3P0CW19 MIR4770-201ENST00000579149 58 ntBASIC-1.95□□□□□ -2.72
LIMS3P0CW19 MIR4464-201ENST00000580818 92 ntBASIC-1.95□□□□□ -2.72
LIMS3P0CW19 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.95□□□□□ -2.72
LIMS3P0CW19 MIR1246-201ENST00000636535 73 ntBASIC-1.95□□□□□ -2.72
LIMS3P0CW19 MIR365A-201ENST00000362260 87 ntBASIC-1.96□□□□□ -2.72
LIMS3P0CW19 RNU6-1318P-201ENST00000365389 103 ntBASIC-1.96□□□□□ -2.72
LIMS3P0CW19 MIR527-201ENST00000385244 85 ntBASIC-1.96□□□□□ -2.72
LIMS3P0CW19 MTND2P23-201ENST00000422990 651 ntBASIC-1.96□□□□□ -2.72
LIMS3P0CW19 RNU6-1271P-201ENST00000517049 105 ntBASIC-1.96□□□□□ -2.72
LIMS3P0CW19 DNAJC19P2-201ENST00000593340 302 ntBASIC-1.96□□□□□ -2.72
LIMS3P0CW19 AL445584.3-201ENST00000617173 78 ntBASIC-1.96□□□□□ -2.72
LIMS3P0CW19 Y_RNA.65-201ENST00000362846 100 ntBASIC-1.97□□□□□ -2.72
LIMS3P0CW19 Y_RNA.114-201ENST00000363265 113 ntBASIC-1.97□□□□□ -2.72
LIMS3P0CW19 RNU6-238P-201ENST00000363313 106 ntBASIC-1.97□□□□□ -2.72
LIMS3P0CW19 RNU6-990P-201ENST00000364385 104 ntBASIC-1.97□□□□□ -2.72
LIMS3P0CW19 Y_RNA.460-201ENST00000384255 102 ntBASIC-1.97□□□□□ -2.72
LIMS3P0CW19 MIR3121-201ENST00000579680 77 ntBASIC-1.97□□□□□ -2.72
LIMS3P0CW19 MIR3658-201ENST00000636291 56 ntBASIC-1.97□□□□□ -2.72
LIMS3P0CW19 Y_RNA.138-201ENST00000363462 102 ntBASIC-1.98□□□□□ -2.73
LIMS3P0CW19 SNORD50.2-201ENST00000365465 70 ntBASIC-1.98□□□□□ -2.73
LIMS3P0CW19 RNU7-24P-201ENST00000458867 62 ntBASIC-1.98□□□□□ -2.73
LIMS3P0CW19 RNU7-121P-201ENST00000516604 62 ntBASIC-1.98□□□□□ -2.73
LIMS3P0CW19 AC130289.1-201ENST00000577321 73 ntBASIC-1.98□□□□□ -2.73
LIMS3P0CW19 MIR548S-201ENST00000581352 82 ntBASIC-1.98□□□□□ -2.73
LIMS3P0CW19 MIR4441-201ENST00000582623 100 ntBASIC-1.98□□□□□ -2.73
LIMS3P0CW19 AC025521.1-201ENST00000621624 286 ntBASIC-1.98□□□□□ -2.73
LIMS3P0CW19 RNU6-226P-201ENST00000363778 107 ntBASIC-1.99□□□□□ -2.73
LIMS3P0CW19 SNORD58.1-201ENST00000391313 66 ntBASIC-1.99□□□□□ -2.73
LIMS3P0CW19 MIR889-201ENST00000401280 79 ntBASIC-1.99□□□□□ -2.73
LIMS3P0CW19 Y_RNA.633-201ENST00000459107 95 ntBASIC-1.99□□□□□ -2.73
LIMS3P0CW19 RNU6-158P-201ENST00000517104 100 ntBASIC-1.99□□□□□ -2.73
LIMS3P0CW19 MIR6818-201ENST00000621576 65 ntBASIC-1.99□□□□□ -2.73
LIMS3P0CW19 MIR6888-201ENST00000621977 67 ntBASIC-1.99□□□□□ -2.73
LIMS3P0CW19 RNU6-924P-201ENST00000362926 108 ntBASIC-2□□□□□ -2.73
LIMS3P0CW19 RNU6-639P-201ENST00000384074 107 ntBASIC-2□□□□□ -2.73
LIMS3P0CW19 Y_RNA.509-201ENST00000384506 99 ntBASIC-2□□□□□ -2.73
LIMS3P0CW19 MIR548U-201ENST00000390728 81 ntBASIC-2□□□□□ -2.73
LIMS3P0CW19 RNU6-1177P-201ENST00000391058 104 ntBASIC-2□□□□□ -2.73
LIMS3P0CW19 SNORD75.2-201ENST00000408784 58 ntBASIC-2□□□□□ -2.73
LIMS3P0CW19 RNU2-38P-201ENST00000410856 79 ntBASIC-2□□□□□ -2.73
LIMS3P0CW19 RNU6-1290P-201ENST00000362957 109 ntBASIC-2.01□□□□□ -2.73
LIMS3P0CW19 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-2.01□□□□□ -2.73
LIMS3P0CW19 AC020661.2-201ENST00000560114 134 ntBASIC-2.01□□□□□ -2.73
LIMS3P0CW19 MIR6129-201ENST00000616087 109 ntBASIC-2.01□□□□□ -2.73
LIMS3P0CW19 Y_RNA.163-201ENST00000363702 113 ntBASIC-2.02□□□□□ -2.73
LIMS3P0CW19 SNORA33.2-201ENST00000365413 134 ntBASIC-2.02□□□□□ -2.73
LIMS3P0CW19 RNU6-1130P-201ENST00000365434 107 ntBASIC-2.02□□□□□ -2.73
LIMS3P0CW19 MIR548A1-201ENST00000385041 97 ntBASIC-2.02□□□□□ -2.73
LIMS3P0CW19 MIR1263-201ENST00000408324 86 ntBASIC-2.02□□□□□ -2.73
LIMS3P0CW19 MIR1468-201ENST00000410600 86 ntBASIC-2.02□□□□□ -2.73
LIMS3P0CW19 MIR3140-201ENST00000583685 90 ntBASIC-2.02□□□□□ -2.73
LIMS3P0CW19 AC090617.8-201ENST00000623339 167 ntBASIC-2.02□□□□□ -2.73
LIMS3P0CW19 Y_RNA.344-201ENST00000365381 112 ntBASIC-2.03□□□□□ -2.73
LIMS3P0CW19 Y_RNA.396-201ENST00000383949 103 ntBASIC-2.03□□□□□ -2.73
LIMS3P0CW19 RNU6-576P-201ENST00000390854 102 ntBASIC-2.03□□□□□ -2.73
LIMS3P0CW19 RNU7-85P-201ENST00000458851 63 ntBASIC-2.03□□□□□ -2.73
LIMS3P0CW19 SNORD115-33-201ENST00000363723 82 ntBASIC-2.04□□□□□ -2.74
LIMS3P0CW19 SNORA15B-2-201ENST00000384058 135 ntBASIC-2.04□□□□□ -2.74
LIMS3P0CW19 SNORA24B-201ENST00000384176 131 ntBASIC-2.04□□□□□ -2.74
LIMS3P0CW19 SNORA15B-1-201ENST00000384334 135 ntBASIC-2.04□□□□□ -2.74
LIMS3P0CW19 Y_RNA.574-201ENST00000384766 95 ntBASIC-2.04□□□□□ -2.74
LIMS3P0CW19 RNU6-816P-201ENST00000390914 107 ntBASIC-2.04□□□□□ -2.74
LIMS3P0CW19 RNU6-1268P-201ENST00000391214 107 ntBASIC-2.04□□□□□ -2.74
LIMS3P0CW19 RNU6-1239P-201ENST00000391310 107 ntBASIC-2.04□□□□□ -2.74
LIMS3P0CW19 RNU6-1219P-201ENST00000516143 112 ntBASIC-2.04□□□□□ -2.74
LIMS3P0CW19 AC068339.1-201ENST00000526965 141 ntBASIC-2.04□□□□□ -2.74
LIMS3P0CW19 MIR4520-1-201ENST00000582609 70 ntBASIC-2.04□□□□□ -2.74
LIMS3P0CW19 MIR6502-201ENST00000617296 76 ntBASIC-2.04□□□□□ -2.74
LIMS3P0CW19 RNY4P6-201ENST00000363667 96 ntBASIC-2.05□□□□□ -2.74
LIMS3P0CW19 RNU6-132P-201ENST00000383863 107 ntBASIC-2.05□□□□□ -2.74
LIMS3P0CW19 SNORA26.4-201ENST00000391188 123 ntBASIC-2.05□□□□□ -2.74
LIMS3P0CW19 RNU6-1020P-201ENST00000363684 107 ntBASIC-2.06□□□□□ -2.74
LIMS3P0CW19 RNU4-71P-201ENST00000516258 113 ntBASIC-2.06□□□□□ -2.74
LIMS3P0CW19 Y_RNA.20-201ENST00000362479 113 ntBASIC-2.07□□□□□ -2.74
LIMS3P0CW19 Y_RNA.232-201ENST00000364369 96 ntBASIC-2.07□□□□□ -2.74
LIMS3P0CW19 Y_RNA.528-201ENST00000384575 108 ntBASIC-2.07□□□□□ -2.74
LIMS3P0CW19 RNU4-61P-201ENST00000411243 107 ntBASIC-2.07□□□□□ -2.74
LIMS3P0CW19 MTATP8P1-201ENST00000467115 207 ntBASIC-2.07□□□□□ -2.74
LIMS3P0CW19 MIR3064-201ENST00000581130 66 ntBASIC-2.07□□□□□ -2.74
LIMS3P0CW19 AL627230.5-201ENST00000619807 58 ntBASIC-2.07□□□□□ -2.74
LIMS3P0CW19 Y_RNA.288-201ENST00000364854 92 ntBASIC-2.08□□□□□ -2.74
LIMS3P0CW19 Y_RNA.413-201ENST00000384007 102 ntBASIC-2.08□□□□□ -2.74
LIMS3P0CW19 Y_RNA.754-201ENST00000476024 102 ntBASIC-2.08□□□□□ -2.74
LIMS3P0CW19 AL513043.2-201ENST00000573941 143 ntBASIC-2.08□□□□□ -2.74
LIMS3P0CW19 AC006254.2-201ENST00000603259 279 ntBASIC-2.08□□□□□ -2.74
LIMS3P0CW19 Y_RNA.790-201ENST00000614282 102 ntBASIC-2.08□□□□□ -2.74
LIMS3P0CW19 Y_RNA.782-201ENST00000614695 102 ntBASIC-2.08□□□□□ -2.74
LIMS3P0CW19 Y_RNA.233-201ENST00000364407 101 ntBASIC-2.09□□□□□ -2.74
LIMS3P0CW19 RNU6-915P-201ENST00000364943 103 ntBASIC-2.09□□□□□ -2.74
LIMS3P0CW19 RNU6-746P-201ENST00000384112 109 ntBASIC-2.09□□□□□ -2.74
LIMS3P0CW19 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-2.09□□□□□ -2.74
LIMS3P0CW19 RNU2-51P-201ENST00000410708 197 ntBASIC-2.09□□□□□ -2.74
LIMS3P0CW19 SNORD63.1-201ENST00000516178 80 ntBASIC-2.09□□□□□ -2.74
LIMS3P0CW19 AC104996.3-201ENST00000590718 94 ntBASIC-2.09□□□□□ -2.74
LIMS3P0CW19 Y_RNA.250-201ENST00000364542 110 ntBASIC-2.1□□□□□ -2.75
LIMS3P0CW19 RNU6-1051P-201ENST00000365471 102 ntBASIC-2.1□□□□□ -2.75
LIMS3P0CW19 MIR1255B2-201ENST00000408618 67 ntBASIC-2.1□□□□□ -2.75
Retrieved 100 of 98,524 protein–RNA pairs in 230.8 ms