Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.66□□□□□ -2.3
LDB3O75112 Y_RNA.258-201ENST00000364613 105 ntBASIC0.65□□□□□ -2.31
LDB3O75112 RNU6-279P-201ENST00000391297 101 ntBASIC0.65□□□□□ -2.31
LDB3O75112 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.65□□□□□ -2.31
LDB3O75112 RNU6-469P-201ENST00000516253 101 ntBASIC0.65□□□□□ -2.31
LDB3O75112 RNA5SP94-201ENST00000516917 108 ntBASIC0.65□□□□□ -2.31
LDB3O75112 RNU6-1223P-201ENST00000517124 104 ntBASIC0.65□□□□□ -2.31
LDB3O75112 Y_RNA.788-201ENST00000622394 112 ntBASIC0.65□□□□□ -2.31
LDB3O75112 AC067863.3-201ENST00000624172 122 ntBASIC0.65□□□□□ -2.31
LDB3O75112 MIR508-201ENST00000384857 115 ntBASIC0.64□□□□□ -2.31
LDB3O75112 SNORD41.1-201ENST00000391000 69 ntBASIC0.64□□□□□ -2.31
LDB3O75112 RNU6-129P-201ENST00000391022 107 ntBASIC0.64□□□□□ -2.31
LDB3O75112 MIRLET7A1-201ENST00000362295 80 ntBASIC0.63□□□□□ -2.31
LDB3O75112 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.63□□□□□ -2.31
LDB3O75112 RNU6-269P-201ENST00000391077 97 ntBASIC0.63□□□□□ -2.31
LDB3O75112 snoU13.18-201ENST00000459483 104 ntBASIC0.63□□□□□ -2.31
LDB3O75112 SCARNA16.5-201ENST00000517114 183 ntBASIC0.63□□□□□ -2.31
LDB3O75112 MIR4714-201ENST00000580728 77 ntBASIC0.63□□□□□ -2.31
LDB3O75112 MIR7107-201ENST00000611489 80 ntBASIC0.63□□□□□ -2.31
LDB3O75112 MIR6828-201ENST00000636181 60 ntBASIC0.63□□□□□ -2.31
LDB3O75112 RNU6-824P-201ENST00000363724 104 ntBASIC0.62□□□□□ -2.31
LDB3O75112 RNU6-1229P-201ENST00000364295 107 ntBASIC0.62□□□□□ -2.31
LDB3O75112 Y_RNA.244-201ENST00000364484 109 ntBASIC0.62□□□□□ -2.31
LDB3O75112 SNORD115-44-201ENST00000365391 82 ntBASIC0.62□□□□□ -2.31
LDB3O75112 SNORA36.2-201ENST00000384004 127 ntBASIC0.62□□□□□ -2.31
LDB3O75112 MIR617-201ENST00000385030 97 ntBASIC0.62□□□□□ -2.31
LDB3O75112 RNU6-638P-201ENST00000516582 104 ntBASIC0.62□□□□□ -2.31
LDB3O75112 MIR5000-201ENST00000577717 103 ntBASIC0.62□□□□□ -2.31
LDB3O75112 AL590095.2-201ENST00000604136 117 ntBASIC0.62□□□□□ -2.31
LDB3O75112 RNU6-208P-201ENST00000362431 107 ntBASIC0.61□□□□□ -2.31
LDB3O75112 RNA5SP517-201ENST00000364724 117 ntBASIC0.61□□□□□ -2.31
LDB3O75112 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.61□□□□□ -2.31
LDB3O75112 SNORD77.2-201ENST00000391045 68 ntBASIC0.61□□□□□ -2.31
LDB3O75112 MIR889-201ENST00000401280 79 ntBASIC0.61□□□□□ -2.31
LDB3O75112 AC093423.1-201ENST00000440817 142 ntBASIC0.61□□□□□ -2.31
LDB3O75112 SCARNA18B-201ENST00000458806 135 ntBASIC0.61□□□□□ -2.31
LDB3O75112 RNU6-557P-201ENST00000516842 110 ntBASIC0.61□□□□□ -2.31
LDB3O75112 MIR4752-201ENST00000579672 72 ntBASIC0.61□□□□□ -2.31
LDB3O75112 Y_RNA.118-201ENST00000363300 101 ntBASIC0.6□□□□□ -2.31
LDB3O75112 Y_RNA.355-201ENST00000365462 98 ntBASIC0.6□□□□□ -2.31
LDB3O75112 RNA5SP484-201ENST00000458857 111 ntBASIC0.6□□□□□ -2.31
LDB3O75112 RNU6-135P-201ENST00000516769 101 ntBASIC0.6□□□□□ -2.31
LDB3O75112 RNA5SP268-201ENST00000516828 124 ntBASIC0.6□□□□□ -2.31
LDB3O75112 MIR4484-201ENST00000582855 83 ntBASIC0.6□□□□□ -2.31
LDB3O75112 RNU6-330P-201ENST00000363015 107 ntBASIC0.59□□□□□ -2.31
LDB3O75112 RNU6-686P-201ENST00000364839 107 ntBASIC0.59□□□□□ -2.31
LDB3O75112 RNU6-54P-201ENST00000365563 107 ntBASIC0.59□□□□□ -2.31
LDB3O75112 SNORA8.2-201ENST00000384372 139 ntBASIC0.59□□□□□ -2.31
LDB3O75112 MIR548L-201ENST00000408303 86 ntBASIC0.59□□□□□ -2.31
LDB3O75112 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.59□□□□□ -2.31
LDB3O75112 RNA5SP227-201ENST00000516184 113 ntBASIC0.59□□□□□ -2.31
LDB3O75112 RNU4-54P-201ENST00000516428 129 ntBASIC0.59□□□□□ -2.31
LDB3O75112 RNU1-29P-201ENST00000606574 126 ntBASIC0.59□□□□□ -2.31
LDB3O75112 SNORA25.18-201ENST00000607153 114 ntBASIC0.59□□□□□ -2.31
LDB3O75112 AL162376.1-201ENST00000624117 175 ntBASIC0.59□□□□□ -2.31
LDB3O75112 Y_RNA.12-201ENST00000362393 112 ntBASIC0.58□□□□□ -2.32
LDB3O75112 RNU6-315P-201ENST00000362666 107 ntBASIC0.58□□□□□ -2.32
LDB3O75112 Y_RNA.371-201ENST00000365591 113 ntBASIC0.58□□□□□ -2.32
LDB3O75112 MIR140-201ENST00000385282 100 ntBASIC0.58□□□□□ -2.32
LDB3O75112 MIR664A-201ENST00000626086 82 ntBASIC0.58□□□□□ -2.32
LDB3O75112 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.58□□□□□ -2.32
LDB3O75112 RNU5F-1-201ENST00000362507 117 ntBASIC0.57□□□□□ -2.32
LDB3O75112 RNU1-141P-201ENST00000364623 158 ntBASIC0.57□□□□□ -2.32
LDB3O75112 RNU6-24P-201ENST00000384440 107 ntBASIC0.57□□□□□ -2.32
LDB3O75112 AC069271.1-201ENST00000445577 156 ntBASIC0.57□□□□□ -2.32
LDB3O75112 SNORD42B-201ENST00000458893 67 ntBASIC0.57□□□□□ -2.32
LDB3O75112 RNU6-1057P-201ENST00000517162 102 ntBASIC0.57□□□□□ -2.32
LDB3O75112 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.57□□□□□ -2.32
LDB3O75112 SNORA70.25-201ENST00000612741 95 ntBASIC0.57□□□□□ -2.32
LDB3O75112 MIR548O2-201ENST00000616090 70 ntBASIC0.57□□□□□ -2.32
LDB3O75112 RNU6-382P-201ENST00000365181 106 ntBASIC0.56□□□□□ -2.32
LDB3O75112 RNU6V-201ENST00000384105 107 ntBASIC0.56□□□□□ -2.32
LDB3O75112 RNU6-1177P-201ENST00000391058 104 ntBASIC0.56□□□□□ -2.32
LDB3O75112 RNU5B-6P-201ENST00000516765 68 ntBASIC0.56□□□□□ -2.32
LDB3O75112 NAMPTP3-201ENST00000569273 224 ntBASIC0.56□□□□□ -2.32
LDB3O75112 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.56□□□□□ -2.32
LDB3O75112 AC022709.1-201ENST00000615967 87 ntBASIC0.56□□□□□ -2.32
LDB3O75112 RNU6-340P-201ENST00000364005 107 ntBASIC0.55□□□□□ -2.32
LDB3O75112 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.55□□□□□ -2.32
LDB3O75112 AC018659.1-201ENST00000551083 169 ntBASIC0.55□□□□□ -2.32
LDB3O75112 U6.81-201ENST00000612550 106 ntBASIC0.55□□□□□ -2.32
LDB3O75112 MIR6515-201ENST00000619843 57 ntBASIC0.55□□□□□ -2.32
LDB3O75112 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.55□□□□□ -2.32
LDB3O75112 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
LDB3O75112 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
LDB3O75112 RNU6-154P-201ENST00000384306 106 ntBASIC0.54□□□□□ -2.32
LDB3O75112 MT-TY-201ENST00000387409 66 ntBASIC0.54□□□□□ -2.32
LDB3O75112 U3.27-201ENST00000391237 200 ntBASIC0.54□□□□□ -2.32
LDB3O75112 AC074348.1-201ENST00000426503 132 ntBASIC0.54□□□□□ -2.32
LDB3O75112 AC097510.1-201ENST00000510945 133 ntBASIC0.54□□□□□ -2.32
LDB3O75112 RNU6-1232P-201ENST00000516299 86 ntBASIC0.54□□□□□ -2.32
LDB3O75112 RNA5SP121-201ENST00000516537 101 ntBASIC0.54□□□□□ -2.32
LDB3O75112 MIR3134-201ENST00000579433 74 ntBASIC0.54□□□□□ -2.32
LDB3O75112 YWHAEP2-201ENST00000580066 112 ntBASIC0.54□□□□□ -2.32
LDB3O75112 YWHAEP3-201ENST00000582767 121 ntBASIC0.54□□□□□ -2.32
LDB3O75112 MIR4773-1-201ENST00000637203 78 ntBASIC0.54□□□□□ -2.32
LDB3O75112 RNY4P3-201ENST00000365254 95 ntBASIC0.53□□□□□ -2.32
LDB3O75112 MIR92A1-201ENST00000385233 78 ntBASIC0.53□□□□□ -2.32
LDB3O75112 Y_RNA.606-201ENST00000410579 103 ntBASIC0.53□□□□□ -2.32
LDB3O75112 Y_RNA.660-201ENST00000516002 120 ntBASIC0.53□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 180.4 ms