Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MIR519E-201ENST00000385075 84 ntBASIC0.55□□□□□ -2.32
LMX1BO60663 SNORA26.2-201ENST00000390922 122 ntBASIC0.55□□□□□ -2.32
LMX1BO60663 Y_RNA.611-201ENST00000410682 108 ntBASIC0.55□□□□□ -2.32
LMX1BO60663 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.55□□□□□ -2.32
LMX1BO60663 AC093423.1-201ENST00000440817 142 ntBASIC0.55□□□□□ -2.32
LMX1BO60663 RNA5SP268-201ENST00000516828 124 ntBASIC0.55□□□□□ -2.32
LMX1BO60663 AC140658.3-201ENST00000567603 271 ntBASIC0.55□□□□□ -2.32
LMX1BO60663 AL162376.1-201ENST00000624117 175 ntBASIC0.55□□□□□ -2.32
LMX1BO60663 Y_RNA.115-201ENST00000363272 98 ntBASIC0.54□□□□□ -2.32
LMX1BO60663 Y_RNA.239-201ENST00000364444 113 ntBASIC0.54□□□□□ -2.32
LMX1BO60663 SNORA36.2-201ENST00000384004 127 ntBASIC0.54□□□□□ -2.32
LMX1BO60663 MIR617-201ENST00000385030 97 ntBASIC0.54□□□□□ -2.32
LMX1BO60663 MIR548U-201ENST00000390728 81 ntBASIC0.54□□□□□ -2.32
LMX1BO60663 RNU6-269P-201ENST00000391077 97 ntBASIC0.54□□□□□ -2.32
LMX1BO60663 RNU7-171P-201ENST00000459581 62 ntBASIC0.54□□□□□ -2.32
LMX1BO60663 AC093729.1-201ENST00000513074 128 ntBASIC0.54□□□□□ -2.32
LMX1BO60663 SNORA25.13-201ENST00000516395 103 ntBASIC0.54□□□□□ -2.32
LMX1BO60663 MIR4711-201ENST00000578274 70 ntBASIC0.54□□□□□ -2.32
LMX1BO60663 MIR4796-201ENST00000580742 81 ntBASIC0.54□□□□□ -2.32
LMX1BO60663 RNU1-29P-201ENST00000606574 126 ntBASIC0.54□□□□□ -2.32
LMX1BO60663 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.54□□□□□ -2.32
LMX1BO60663 AC243829.3-201ENST00000622177 108 ntBASIC0.54□□□□□ -2.32
LMX1BO60663 MIR5087-201ENST00000635826 76 ntBASIC0.54□□□□□ -2.32
LMX1BO60663 RNU6-624P-201ENST00000363411 107 ntBASIC0.53□□□□□ -2.32
LMX1BO60663 RNU6-573P-201ENST00000383938 106 ntBASIC0.53□□□□□ -2.32
LMX1BO60663 SNORA24B-201ENST00000384176 131 ntBASIC0.53□□□□□ -2.32
LMX1BO60663 RNU6-935P-201ENST00000410371 100 ntBASIC0.53□□□□□ -2.32
LMX1BO60663 MIR3140-201ENST00000583685 90 ntBASIC0.53□□□□□ -2.32
LMX1BO60663 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.53□□□□□ -2.32
LMX1BO60663 SNORD118-201ENST00000363593 134 ntBASIC0.52□□□□□ -2.33
LMX1BO60663 RNA5SP173-201ENST00000364857 136 ntBASIC0.52□□□□□ -2.33
LMX1BO60663 RNA5SP193-201ENST00000410353 107 ntBASIC0.52□□□□□ -2.33
LMX1BO60663 snoU13.17-201ENST00000458802 104 ntBASIC0.52□□□□□ -2.33
LMX1BO60663 RNU6-1051P-201ENST00000365471 102 ntBASIC0.51□□□□□ -2.33
LMX1BO60663 RNA5SP227-201ENST00000516184 113 ntBASIC0.51□□□□□ -2.33
LMX1BO60663 RNU4-54P-201ENST00000516428 129 ntBASIC0.51□□□□□ -2.33
LMX1BO60663 RNA5SP330-201ENST00000517096 96 ntBASIC0.51□□□□□ -2.33
LMX1BO60663 MIR8087-201ENST00000612745 78 ntBASIC0.51□□□□□ -2.33
LMX1BO60663 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.51□□□□□ -2.33
LMX1BO60663 RNU6-1276P-201ENST00000365372 104 ntBASIC0.5□□□□□ -2.33
LMX1BO60663 MIR451A-201ENST00000385059 72 ntBASIC0.5□□□□□ -2.33
LMX1BO60663 MIR92A1-201ENST00000385233 78 ntBASIC0.5□□□□□ -2.33
LMX1BO60663 MIR4666B-201ENST00000578142 81 ntBASIC0.5□□□□□ -2.33
LMX1BO60663 SNORA25.18-201ENST00000607153 114 ntBASIC0.5□□□□□ -2.33
LMX1BO60663 uc_338.17-201ENST00000619633 179 ntBASIC0.5□□□□□ -2.33
LMX1BO60663 AC092634.7-201ENST00000621022 103 ntBASIC0.5□□□□□ -2.33
LMX1BO60663 SNORA63.2-201ENST00000362603 126 ntBASIC0.49□□□□□ -2.33
LMX1BO60663 RNA5SP499-201ENST00000363982 119 ntBASIC0.49□□□□□ -2.33
LMX1BO60663 Y_RNA.607-201ENST00000410597 98 ntBASIC0.49□□□□□ -2.33
LMX1BO60663 RNU6-1052P-201ENST00000411398 104 ntBASIC0.49□□□□□ -2.33
LMX1BO60663 AC069271.1-201ENST00000445577 156 ntBASIC0.49□□□□□ -2.33
LMX1BO60663 AL157398.1-201ENST00000452981 186 ntBASIC0.49□□□□□ -2.33
LMX1BO60663 RNU6-229P-201ENST00000516614 102 ntBASIC0.49□□□□□ -2.33
LMX1BO60663 RNU6-719P-201ENST00000516671 104 ntBASIC0.49□□□□□ -2.33
LMX1BO60663 MIR4752-201ENST00000579672 72 ntBASIC0.49□□□□□ -2.33
LMX1BO60663 MIR330-201ENST00000362196 94 ntBASIC0.48□□□□□ -2.33
LMX1BO60663 RNU6-478P-201ENST00000363904 110 ntBASIC0.48□□□□□ -2.33
LMX1BO60663 RNU1-141P-201ENST00000364623 158 ntBASIC0.48□□□□□ -2.33
LMX1BO60663 Y_RNA.426-201ENST00000384068 113 ntBASIC0.48□□□□□ -2.33
LMX1BO60663 SNORA40.8-201ENST00000411034 126 ntBASIC0.48□□□□□ -2.33
LMX1BO60663 AC098934.3-201ENST00000430450 190 ntBASIC0.48□□□□□ -2.33
LMX1BO60663 AL450471.1-201ENST00000447509 127 ntBASIC0.48□□□□□ -2.33
LMX1BO60663 RNA5SP484-201ENST00000458857 111 ntBASIC0.48□□□□□ -2.33
LMX1BO60663 MIR548O2-201ENST00000616090 70 ntBASIC0.48□□□□□ -2.33
LMX1BO60663 AL109933.3-201ENST00000619095 188 ntBASIC0.48□□□□□ -2.33
LMX1BO60663 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.48□□□□□ -2.33
LMX1BO60663 Y_RNA.258-201ENST00000364613 105 ntBASIC0.47□□□□□ -2.33
LMX1BO60663 Y_RNA.316-201ENST00000365118 111 ntBASIC0.47□□□□□ -2.33
LMX1BO60663 RNU6-945P-201ENST00000383947 107 ntBASIC0.47□□□□□ -2.33
LMX1BO60663 MIR518A1-201ENST00000385068 85 ntBASIC0.47□□□□□ -2.33
LMX1BO60663 U3.27-201ENST00000391237 200 ntBASIC0.47□□□□□ -2.33
LMX1BO60663 MIR548L-201ENST00000408303 86 ntBASIC0.47□□□□□ -2.33
LMX1BO60663 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.47□□□□□ -2.33
LMX1BO60663 FGF7P7-201ENST00000514120 227 ntBASIC0.47□□□□□ -2.33
LMX1BO60663 SNORA70.25-201ENST00000612741 95 ntBASIC0.47□□□□□ -2.33
LMX1BO60663 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.46□□□□□ -2.34
LMX1BO60663 Y_RNA.313-201ENST00000365095 103 ntBASIC0.46□□□□□ -2.34
LMX1BO60663 RNU7-74P-201ENST00000459104 62 ntBASIC0.46□□□□□ -2.34
LMX1BO60663 SNORA72.7-201ENST00000516349 94 ntBASIC0.46□□□□□ -2.34
LMX1BO60663 RNA5SP395-201ENST00000516567 118 ntBASIC0.46□□□□□ -2.34
LMX1BO60663 MIR6755-201ENST00000619993 66 ntBASIC0.46□□□□□ -2.34
LMX1BO60663 SNORD115-37-201ENST00000363768 82 ntBASIC0.45□□□□□ -2.34
LMX1BO60663 RNU6-242P-201ENST00000384359 107 ntBASIC0.45□□□□□ -2.34
LMX1BO60663 MT-TY-201ENST00000387409 66 ntBASIC0.45□□□□□ -2.34
LMX1BO60663 RNU6-557P-201ENST00000516842 110 ntBASIC0.45□□□□□ -2.34
LMX1BO60663 MIR1245B-201ENST00000636115 69 ntBASIC0.45□□□□□ -2.34
LMX1BO60663 RNU6-228P-201ENST00000362700 106 ntBASIC0.44□□□□□ -2.34
LMX1BO60663 Y_RNA.94-201ENST00000363068 106 ntBASIC0.44□□□□□ -2.34
LMX1BO60663 SNORD44.1-201ENST00000363202 61 ntBASIC0.44□□□□□ -2.34
LMX1BO60663 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC0.44□□□□□ -2.34
LMX1BO60663 AC114737.2-201ENST00000421583 173 ntBASIC0.44□□□□□ -2.34
LMX1BO60663 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.44□□□□□ -2.34
LMX1BO60663 RNU6-1232P-201ENST00000516299 86 ntBASIC0.44□□□□□ -2.34
LMX1BO60663 RNA5SP121-201ENST00000516537 101 ntBASIC0.44□□□□□ -2.34
LMX1BO60663 AC018659.1-201ENST00000551083 169 ntBASIC0.44□□□□□ -2.34
LMX1BO60663 NAMPTP3-201ENST00000569273 224 ntBASIC0.44□□□□□ -2.34
LMX1BO60663 AC243829.6-201ENST00000612652 106 ntBASIC0.44□□□□□ -2.34
LMX1BO60663 RNU6-161P-201ENST00000363051 106 ntBASIC0.43□□□□□ -2.34
LMX1BO60663 RNU6-824P-201ENST00000363724 104 ntBASIC0.43□□□□□ -2.34
LMX1BO60663 Y_RNA.437-201ENST00000384113 113 ntBASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms