Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MIR451A-201ENST00000385059 72 ntBASIC-0.3□□□□□ -2.46
MSH4O15457 U3.27-201ENST00000391237 200 ntBASIC-0.3□□□□□ -2.46
MSH4O15457 MIR1265-201ENST00000408444 86 ntBASIC-0.3□□□□□ -2.46
MSH4O15457 RNU7-85P-201ENST00000458851 63 ntBASIC-0.3□□□□□ -2.46
MSH4O15457 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.3□□□□□ -2.46
MSH4O15457 RNU6-320P-201ENST00000516511 106 ntBASIC-0.3□□□□□ -2.46
MSH4O15457 AL513043.2-201ENST00000573941 143 ntBASIC-0.3□□□□□ -2.46
MSH4O15457 MIR4636-201ENST00000582271 80 ntBASIC-0.3□□□□□ -2.46
MSH4O15457 MIR4536-1-201ENST00000583537 88 ntBASIC-0.3□□□□□ -2.46
MSH4O15457 Y_RNA.71-201ENST00000362892 104 ntBASIC-0.31□□□□□ -2.46
MSH4O15457 Y_RNA.467-201ENST00000384297 102 ntBASIC-0.31□□□□□ -2.46
MSH4O15457 MIR548A3-201ENST00000385297 97 ntBASIC-0.31□□□□□ -2.46
MSH4O15457 Y_RNA.601-201ENST00000410500 113 ntBASIC-0.31□□□□□ -2.46
MSH4O15457 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.31□□□□□ -2.46
MSH4O15457 MIR4802-201ENST00000581881 80 ntBASIC-0.31□□□□□ -2.46
MSH4O15457 MIR4645-201ENST00000583158 77 ntBASIC-0.31□□□□□ -2.46
MSH4O15457 MIR548Z-201ENST00000584743 97 ntBASIC-0.31□□□□□ -2.46
MSH4O15457 MIR4788-201ENST00000639104 80 ntBASIC-0.31□□□□□ -2.46
MSH4O15457 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.32□□□□□ -2.46
MSH4O15457 RNA5SP275-201ENST00000363936 118 ntBASIC-0.32□□□□□ -2.46
MSH4O15457 SNORD45B-201ENST00000364617 72 ntBASIC-0.32□□□□□ -2.46
MSH4O15457 RNU6-54P-201ENST00000365563 107 ntBASIC-0.32□□□□□ -2.46
MSH4O15457 MIR9-2-201ENST00000384838 87 ntBASIC-0.32□□□□□ -2.46
MSH4O15457 SNORA49-201ENST00000386157 136 ntBASIC-0.32□□□□□ -2.46
MSH4O15457 MIR548I1-201ENST00000408810 149 ntBASIC-0.32□□□□□ -2.46
MSH4O15457 FGF7P7-201ENST00000514120 227 ntBASIC-0.32□□□□□ -2.46
MSH4O15457 RNU6-65P-201ENST00000516332 98 ntBASIC-0.32□□□□□ -2.46
MSH4O15457 AP000676.1-201ENST00000533307 52 ntBASIC-0.32□□□□□ -2.46
MSH4O15457 MIR3133-201ENST00000583157 78 ntBASIC-0.32□□□□□ -2.46
MSH4O15457 AC145423.2-201ENST00000610631 239 ntBASIC-0.32□□□□□ -2.46
MSH4O15457 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.32□□□□□ -2.46
MSH4O15457 U6.95-201ENST00000636931 70 ntBASIC-0.32□□□□□ -2.46
MSH4O15457 SNORD14C-201ENST00000365382 88 ntBASIC-0.33□□□□□ -2.46
MSH4O15457 RNU6-209P-201ENST00000384118 107 ntBASIC-0.33□□□□□ -2.46
MSH4O15457 RNU6-455P-201ENST00000384681 107 ntBASIC-0.33□□□□□ -2.46
MSH4O15457 Y_RNA.563-201ENST00000384707 108 ntBASIC-0.33□□□□□ -2.46
MSH4O15457 AC096531.1-201ENST00000419107 107 ntBASIC-0.33□□□□□ -2.46
MSH4O15457 RNU6-795P-201ENST00000516323 103 ntBASIC-0.33□□□□□ -2.46
MSH4O15457 MIR3671-201ENST00000580455 88 ntBASIC-0.33□□□□□ -2.46
MSH4O15457 AC103810.7-201ENST00000607821 91 ntBASIC-0.33□□□□□ -2.46
MSH4O15457 SNORD114-11-201ENST00000363738 75 ntBASIC-0.34□□□□□ -2.46
MSH4O15457 Y_RNA.281-201ENST00000364774 94 ntBASIC-0.34□□□□□ -2.46
MSH4O15457 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.34□□□□□ -2.46
MSH4O15457 RNU6-132P-201ENST00000383863 107 ntBASIC-0.34□□□□□ -2.46
MSH4O15457 RNU6-813P-201ENST00000384691 107 ntBASIC-0.34□□□□□ -2.46
MSH4O15457 RNU6-644P-201ENST00000391155 98 ntBASIC-0.34□□□□□ -2.46
MSH4O15457 SNORD126-201ENST00000459475 77 ntBASIC-0.34□□□□□ -2.46
MSH4O15457 MIR4777-201ENST00000583710 86 ntBASIC-0.34□□□□□ -2.46
MSH4O15457 AP001180.6-201ENST00000584918 159 ntBASIC-0.34□□□□□ -2.46
MSH4O15457 MIR8064-201ENST00000612863 90 ntBASIC-0.34□□□□□ -2.46
MSH4O15457 MIR582-201ENST00000365731 98 ntBASIC-0.35□□□□□ -2.47
MSH4O15457 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.35□□□□□ -2.47
MSH4O15457 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.35□□□□□ -2.47
MSH4O15457 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.35□□□□□ -2.47
MSH4O15457 SNORD42B-201ENST00000458893 67 ntBASIC-0.35□□□□□ -2.47
MSH4O15457 SNORD4B-201ENST00000459083 72 ntBASIC-0.35□□□□□ -2.47
MSH4O15457 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.35□□□□□ -2.47
MSH4O15457 SNORD116-14-201ENST00000383894 92 ntBASIC-0.36□□□□□ -2.47
MSH4O15457 SNORD116-17-201ENST00000383929 92 ntBASIC-0.36□□□□□ -2.47
MSH4O15457 SNORD116-15-201ENST00000384445 92 ntBASIC-0.36□□□□□ -2.47
MSH4O15457 RNU6-900P-201ENST00000384498 102 ntBASIC-0.36□□□□□ -2.47
MSH4O15457 SNORD116-19-201ENST00000384729 92 ntBASIC-0.36□□□□□ -2.47
MSH4O15457 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.36□□□□□ -2.47
MSH4O15457 MIR548E-201ENST00000408287 88 ntBASIC-0.36□□□□□ -2.47
MSH4O15457 SNORA19.1-201ENST00000410656 129 ntBASIC-0.36□□□□□ -2.47
MSH4O15457 Z95118.1-201ENST00000421372 247 ntBASIC-0.36□□□□□ -2.47
MSH4O15457 AC097510.1-201ENST00000510945 133 ntBASIC-0.36□□□□□ -2.47
MSH4O15457 RNA5SP66-201ENST00000517178 101 ntBASIC-0.36□□□□□ -2.47
MSH4O15457 MIR3064-201ENST00000581130 66 ntBASIC-0.36□□□□□ -2.47
MSH4O15457 MIR3140-201ENST00000583685 90 ntBASIC-0.36□□□□□ -2.47
MSH4O15457 AC012531.4-201ENST00000616509 177 ntBASIC-0.36□□□□□ -2.47
MSH4O15457 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.37□□□□□ -2.47
MSH4O15457 SNORA63.2-201ENST00000362603 126 ntBASIC-0.37□□□□□ -2.47
MSH4O15457 SNORD115-25-201ENST00000362619 82 ntBASIC-0.37□□□□□ -2.47
MSH4O15457 SNORD114-4-201ENST00000363962 75 ntBASIC-0.37□□□□□ -2.47
MSH4O15457 RNU6-704P-201ENST00000364162 103 ntBASIC-0.37□□□□□ -2.47
MSH4O15457 RNU6-1014P-201ENST00000383940 103 ntBASIC-0.37□□□□□ -2.47
MSH4O15457 SNORA32.3-201ENST00000384772 121 ntBASIC-0.37□□□□□ -2.47
MSH4O15457 MIR196A2-201ENST00000385189 110 ntBASIC-0.37□□□□□ -2.47
MSH4O15457 AL445193.1-201ENST00000441183 141 ntBASIC-0.37□□□□□ -2.47
MSH4O15457 Y_RNA.703-201ENST00000516846 111 ntBASIC-0.37□□□□□ -2.47
MSH4O15457 MIR6086-201ENST00000638065 55 ntBASIC-0.37□□□□□ -2.47
MSH4O15457 MIR101-1-201ENST00000362265 75 ntBASIC-0.38□□□□□ -2.47
MSH4O15457 RNU4-36P-201ENST00000364294 144 ntBASIC-0.38□□□□□ -2.47
MSH4O15457 SNORA24B-201ENST00000384176 131 ntBASIC-0.38□□□□□ -2.47
MSH4O15457 SNORD56B-201ENST00000384713 71 ntBASIC-0.38□□□□□ -2.47
MSH4O15457 SNORD2-201ENST00000459163 69 ntBASIC-0.38□□□□□ -2.47
MSH4O15457 RNU7-55P-201ENST00000459426 62 ntBASIC-0.38□□□□□ -2.47
MSH4O15457 RNU6-1333P-201ENST00000516162 93 ntBASIC-0.38□□□□□ -2.47
MSH4O15457 MIR3668-201ENST00000582138 75 ntBASIC-0.38□□□□□ -2.47
MSH4O15457 MIR4493-201ENST00000584016 73 ntBASIC-0.38□□□□□ -2.47
MSH4O15457 AC104996.3-201ENST00000590718 94 ntBASIC-0.38□□□□□ -2.47
MSH4O15457 RNU6-495P-201ENST00000362995 107 ntBASIC-0.39□□□□□ -2.47
MSH4O15457 Y_RNA.261-201ENST00000364631 102 ntBASIC-0.39□□□□□ -2.47
MSH4O15457 RNU6-1107P-201ENST00000364817 104 ntBASIC-0.39□□□□□ -2.47
MSH4O15457 SNORD116-21-201ENST00000384507 92 ntBASIC-0.39□□□□□ -2.47
MSH4O15457 RNU6-880P-201ENST00000384526 107 ntBASIC-0.39□□□□□ -2.47
MSH4O15457 MT-TR-201ENST00000387439 65 ntBASIC-0.39□□□□□ -2.47
MSH4O15457 MIR548U-201ENST00000390728 81 ntBASIC-0.39□□□□□ -2.47
MSH4O15457 RNU6-758P-201ENST00000516292 89 ntBASIC-0.39□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 176.4 ms