Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.94□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 RPL39P28-201ENST00000465655 155 ntBASIC0.94□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 RNA5SP227-201ENST00000516184 113 ntBASIC0.94□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 ACA64.5-201ENST00000516207 127 ntBASIC0.94□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 RNA5SP268-201ENST00000516828 124 ntBASIC0.94□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 MIR520E-201ENST00000384867 87 ntBASIC0.93□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 MIR216B-201ENST00000390186 82 ntBASIC0.93□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.93□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 YWHAEP2-201ENST00000580066 112 ntBASIC0.93□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 YWHAEP3-201ENST00000582767 121 ntBASIC0.93□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.532-201ENST00000384590 113 ntBASIC0.92□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 RNU6-269P-201ENST00000391077 97 ntBASIC0.92□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 RNU6-380P-201ENST00000410207 107 ntBASIC0.92□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 AC097510.1-201ENST00000510945 133 ntBASIC0.92□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 AL162376.1-201ENST00000624117 175 ntBASIC0.92□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.91□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.371-201ENST00000365591 113 ntBASIC0.91□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 RNU6-1177P-201ENST00000391058 104 ntBASIC0.91□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 RNU2-59P-201ENST00000410482 191 ntBASIC0.91□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 AC093423.1-201ENST00000440817 142 ntBASIC0.91□□□□□ -2.26
NPHP3-ACAD11A0A0J9YXS1 RNU6-824P-201ENST00000363724 104 ntBASIC0.9□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 MIR140-201ENST00000385282 100 ntBASIC0.9□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 RNU6-303P-201ENST00000517091 106 ntBASIC0.9□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 MIR7107-201ENST00000611489 80 ntBASIC0.9□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 MIR6857-201ENST00000613267 93 ntBASIC0.9□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 MIR548O2-201ENST00000616090 70 ntBASIC0.9□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 SNORD114-2-201ENST00000363953 78 ntBASIC0.89□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 RNU6-340P-201ENST00000364005 107 ntBASIC0.89□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 SNORA8.2-201ENST00000384372 139 ntBASIC0.89□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 RNU6-351P-201ENST00000516097 100 ntBASIC0.89□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 MIR6504-201ENST00000613520 61 ntBASIC0.89□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.258-201ENST00000364613 105 ntBASIC0.88□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 RNU1-141P-201ENST00000364623 158 ntBASIC0.88□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.606-201ENST00000410579 103 ntBASIC0.88□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 RPS29P1-201ENST00000465274 159 ntBASIC0.88□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 MIR4484-201ENST00000582855 83 ntBASIC0.88□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 AC211469.2-201ENST00000605461 205 ntBASIC0.88□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 U6.81-201ENST00000612550 106 ntBASIC0.88□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 RNA5SP517-201ENST00000364724 117 ntBASIC0.87□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 SCARNA18B-201ENST00000458806 135 ntBASIC0.87□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 AC145423.2-201ENST00000610631 239 ntBASIC0.87□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 MIR1297-201ENST00000637311 77 ntBASIC0.87□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 MIR146A-201ENST00000385201 99 ntBASIC0.86□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 AC074348.1-201ENST00000426503 132 ntBASIC0.86□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 RNA5SP484-201ENST00000458857 111 ntBASIC0.86□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 PSMC1P5-201ENST00000512850 177 ntBASIC0.86□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 RNU6-807P-201ENST00000516805 107 ntBASIC0.86□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 MIR4460-201ENST00000577862 86 ntBASIC0.86□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 AL078603.1-201ENST00000603824 313 ntBASIC0.86□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.788-201ENST00000622394 112 ntBASIC0.86□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 MIR4662A-201ENST00000637499 67 ntBASIC0.86□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 RNU6-382P-201ENST00000365181 106 ntBASIC0.85□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 RNU6V-201ENST00000384105 107 ntBASIC0.85□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 RNU6-110P-201ENST00000384508 104 ntBASIC0.85□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 MT-TY-201ENST00000387409 66 ntBASIC0.85□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 U7.4-201ENST00000614961 63 ntBASIC0.85□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 AC092634.7-201ENST00000621022 103 ntBASIC0.85□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 MIR4773-1-201ENST00000637203 78 ntBASIC0.85□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 RNU6-681P-201ENST00000364012 104 ntBASIC0.84□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 RNU6-54P-201ENST00000365563 107 ntBASIC0.84□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 MIR889-201ENST00000401280 79 ntBASIC0.84□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 MIR4452-201ENST00000583004 71 ntBASIC0.84□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 DLEU2_3.2-201ENST00000612883 73 ntBASIC0.84□□□□□ -2.27
NPHP3-ACAD11A0A0J9YXS1 RNU6-776P-201ENST00000364403 104 ntBASIC0.83□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 RNU6-1022P-201ENST00000365049 104 ntBASIC0.83□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 NAMPTP3-201ENST00000569273 224 ntBASIC0.83□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 RNU6-495P-201ENST00000362995 107 ntBASIC0.82□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 RNU6-154P-201ENST00000384306 106 ntBASIC0.82□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.82□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 SNORD75.2-201ENST00000408784 58 ntBASIC0.82□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.82□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.676-201ENST00000516393 96 ntBASIC0.82□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 SNORA25.18-201ENST00000607153 114 ntBASIC0.82□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 AC073869.9-201ENST00000641610 120 ntBASIC0.82□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.36-201ENST00000362602 112 ntBASIC0.81□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 RNU6-330P-201ENST00000363015 107 ntBASIC0.81□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 RNU7-24P-201ENST00000458867 62 ntBASIC0.81□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 MIR4752-201ENST00000579672 72 ntBASIC0.81□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC0.81□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 MIR6866-201ENST00000638146 69 ntBASIC0.81□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 MIR499A-201ENST00000384903 122 ntBASIC0.8□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 RNU5B-6P-201ENST00000516765 68 ntBASIC0.8□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 CYP3A137P-201ENST00000562436 69 ntBASIC0.8□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 FAS-AS1.1-201ENST00000615327 126 ntBASIC0.8□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 AC069503.3-201ENST00000618674 145 ntBASIC0.8□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 SNORD118-201ENST00000363593 134 ntBASIC0.79□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 SNORA40.8-201ENST00000411034 126 ntBASIC0.79□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 AC069271.1-201ENST00000445577 156 ntBASIC0.79□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 RNU6-274P-201ENST00000459566 107 ntBASIC0.79□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 MIR3134-201ENST00000579433 74 ntBASIC0.79□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 AL590095.2-201ENST00000604136 117 ntBASIC0.79□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 RNU6-1296P-201ENST00000383879 107 ntBASIC0.78□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 MIR548J-201ENST00000408833 112 ntBASIC0.78□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 AC006210.1-201ENST00000424882 111 ntBASIC0.78□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 SNORD42B-201ENST00000458893 67 ntBASIC0.78□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 SNORA70.25-201ENST00000612741 95 ntBASIC0.78□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 MIR6835-201ENST00000621552 64 ntBASIC0.78□□□□□ -2.28
NPHP3-ACAD11A0A0J9YXS1 SNORD110-201ENST00000408189 75 ntBASIC0.77□□□□□ -2.29
NPHP3-ACAD11A0A0J9YXS1 AC018659.1-201ENST00000551083 169 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 179.5 ms