Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
PCDHA1Q9Y5I3 SNORD116-10-201ENST00000363791 102 ntBASIC0.57□□□□□ -2.32
PCDHA1Q9Y5I3 Y_RNA.283-201ENST00000364798 112 ntBASIC0.57□□□□□ -2.32
PCDHA1Q9Y5I3 RNU6-1126P-201ENST00000384002 107 ntBASIC0.57□□□□□ -2.32
PCDHA1Q9Y5I3 snoU13.11-201ENST00000459219 104 ntBASIC0.57□□□□□ -2.32
PCDHA1Q9Y5I3 MTRNR2L2-201ENST00000604882 87 ntBASIC0.57□□□□□ -2.32
PCDHA1Q9Y5I3 SNORA25.18-201ENST00000607153 114 ntBASIC0.57□□□□□ -2.32
PCDHA1Q9Y5I3 Y_RNA.348-201ENST00000365403 103 ntBASIC0.56□□□□□ -2.32
PCDHA1Q9Y5I3 RNU6-716P-201ENST00000365621 103 ntBASIC0.56□□□□□ -2.32
PCDHA1Q9Y5I3 MIR548L-201ENST00000408303 86 ntBASIC0.56□□□□□ -2.32
PCDHA1Q9Y5I3 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.56□□□□□ -2.32
PCDHA1Q9Y5I3 AL162376.1-201ENST00000624117 175 ntBASIC0.56□□□□□ -2.32
PCDHA1Q9Y5I3 MIR5087-201ENST00000635826 76 ntBASIC0.56□□□□□ -2.32
PCDHA1Q9Y5I3 MIR7-2-201ENST00000384970 110 ntBASIC0.55□□□□□ -2.32
PCDHA1Q9Y5I3 Y_RNA.596-201ENST00000410462 109 ntBASIC0.55□□□□□ -2.32
PCDHA1Q9Y5I3 AC114737.2-201ENST00000421583 173 ntBASIC0.55□□□□□ -2.32
PCDHA1Q9Y5I3 AL161932.1-201ENST00000437408 146 ntBASIC0.55□□□□□ -2.32
PCDHA1Q9Y5I3 AL157398.1-201ENST00000452981 186 ntBASIC0.55□□□□□ -2.32
PCDHA1Q9Y5I3 RNU6-863P-201ENST00000515989 104 ntBASIC0.55□□□□□ -2.32
PCDHA1Q9Y5I3 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.55□□□□□ -2.32
PCDHA1Q9Y5I3 SNORD114-23-201ENST00000363536 72 ntBASIC0.54□□□□□ -2.32
PCDHA1Q9Y5I3 RNU2-59P-201ENST00000410482 191 ntBASIC0.54□□□□□ -2.32
PCDHA1Q9Y5I3 RNU7-74P-201ENST00000459104 62 ntBASIC0.54□□□□□ -2.32
PCDHA1Q9Y5I3 uc_338.17-201ENST00000619633 179 ntBASIC0.54□□□□□ -2.32
PCDHA1Q9Y5I3 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.32
PCDHA1Q9Y5I3 U7.3-201ENST00000616123 62 ntBASIC0.53□□□□□ -2.32
PCDHA1Q9Y5I3 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.53□□□□□ -2.32
PCDHA1Q9Y5I3 U6.100-201ENST00000636230 99 ntBASIC0.53□□□□□ -2.32
PCDHA1Q9Y5I3 SNORD44.1-201ENST00000363202 61 ntBASIC0.52□□□□□ -2.33
PCDHA1Q9Y5I3 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.52□□□□□ -2.33
PCDHA1Q9Y5I3 RNU7-85P-201ENST00000458851 63 ntBASIC0.52□□□□□ -2.33
PCDHA1Q9Y5I3 RNU6-75P-201ENST00000515944 104 ntBASIC0.52□□□□□ -2.33
PCDHA1Q9Y5I3 RNU6-848P-201ENST00000515948 107 ntBASIC0.52□□□□□ -2.33
PCDHA1Q9Y5I3 RNU6-617P-201ENST00000516147 107 ntBASIC0.52□□□□□ -2.33
PCDHA1Q9Y5I3 RNU6-473P-201ENST00000516164 107 ntBASIC0.52□□□□□ -2.33
PCDHA1Q9Y5I3 RNU6-1049P-201ENST00000516414 107 ntBASIC0.52□□□□□ -2.33
PCDHA1Q9Y5I3 MIR4536-1-201ENST00000583537 88 ntBASIC0.52□□□□□ -2.33
PCDHA1Q9Y5I3 AC069271.1-201ENST00000445577 156 ntBASIC0.51□□□□□ -2.33
PCDHA1Q9Y5I3 SNORD4B-201ENST00000459083 72 ntBASIC0.51□□□□□ -2.33
PCDHA1Q9Y5I3 SNORA68.3-201ENST00000515906 83 ntBASIC0.51□□□□□ -2.33
PCDHA1Q9Y5I3 RNU6-168P-201ENST00000516189 101 ntBASIC0.51□□□□□ -2.33
PCDHA1Q9Y5I3 RNU6-65P-201ENST00000516332 98 ntBASIC0.51□□□□□ -2.33
PCDHA1Q9Y5I3 MIR6779-201ENST00000617283 64 ntBASIC0.51□□□□□ -2.33
PCDHA1Q9Y5I3 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.51□□□□□ -2.33
PCDHA1Q9Y5I3 MIRLET7D-201ENST00000362263 87 ntBASIC0.5□□□□□ -2.33
PCDHA1Q9Y5I3 RNU6-664P-201ENST00000362381 107 ntBASIC0.5□□□□□ -2.33
PCDHA1Q9Y5I3 Y_RNA.205-201ENST00000364128 113 ntBASIC0.5□□□□□ -2.33
PCDHA1Q9Y5I3 RNU6-905P-201ENST00000384434 107 ntBASIC0.5□□□□□ -2.33
PCDHA1Q9Y5I3 MIR617-201ENST00000385030 97 ntBASIC0.5□□□□□ -2.33
PCDHA1Q9Y5I3 RNU6-269P-201ENST00000391077 97 ntBASIC0.5□□□□□ -2.33
PCDHA1Q9Y5I3 RNU6-287P-201ENST00000516230 98 ntBASIC0.5□□□□□ -2.33
PCDHA1Q9Y5I3 Y_RNA.677-201ENST00000516401 85 ntBASIC0.5□□□□□ -2.33
PCDHA1Q9Y5I3 MIR4696-201ENST00000581431 70 ntBASIC0.5□□□□□ -2.33
PCDHA1Q9Y5I3 AC243829.6-201ENST00000612652 106 ntBASIC0.5□□□□□ -2.33
PCDHA1Q9Y5I3 AC010487.4-201ENST00000637027 61 ntBASIC0.5□□□□□ -2.33
PCDHA1Q9Y5I3 RNU6-640P-201ENST00000363693 105 ntBASIC0.49□□□□□ -2.33
PCDHA1Q9Y5I3 Y_RNA.207-201ENST00000364142 106 ntBASIC0.49□□□□□ -2.33
PCDHA1Q9Y5I3 Y_RNA.290-201ENST00000364879 114 ntBASIC0.49□□□□□ -2.33
PCDHA1Q9Y5I3 SNORD101-201ENST00000384027 73 ntBASIC0.49□□□□□ -2.33
PCDHA1Q9Y5I3 RNU6-519P-201ENST00000410590 108 ntBASIC0.49□□□□□ -2.33
PCDHA1Q9Y5I3 MIR548AG2-201ENST00000581228 64 ntBASIC0.49□□□□□ -2.33
PCDHA1Q9Y5I3 RNU6-509P-201ENST00000363519 107 ntBASIC0.48□□□□□ -2.33
PCDHA1Q9Y5I3 MIR193B-201ENST00000384907 83 ntBASIC0.48□□□□□ -2.33
PCDHA1Q9Y5I3 RNA5SP89-201ENST00000410300 108 ntBASIC0.48□□□□□ -2.33
PCDHA1Q9Y5I3 MIR2113-201ENST00000459007 91 ntBASIC0.48□□□□□ -2.33
PCDHA1Q9Y5I3 RNU6-162P-201ENST00000516228 103 ntBASIC0.48□□□□□ -2.33
PCDHA1Q9Y5I3 AC073869.9-201ENST00000641610 120 ntBASIC0.48□□□□□ -2.33
PCDHA1Q9Y5I3 AC090625.1-201ENST00000357130 210 ntBASIC0.47□□□□□ -2.33
PCDHA1Q9Y5I3 Y_RNA.190-201ENST00000363964 101 ntBASIC0.47□□□□□ -2.33
PCDHA1Q9Y5I3 MIR519E-201ENST00000385075 84 ntBASIC0.46□□□□□ -2.34
PCDHA1Q9Y5I3 MIR5706-201ENST00000579841 80 ntBASIC0.46□□□□□ -2.34
PCDHA1Q9Y5I3 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.46□□□□□ -2.34
PCDHA1Q9Y5I3 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.46□□□□□ -2.34
PCDHA1Q9Y5I3 MALAT1.1-201ENST00000618249 95 ntBASIC0.46□□□□□ -2.34
PCDHA1Q9Y5I3 Y_RNA.239-201ENST00000364444 113 ntBASIC0.45□□□□□ -2.34
PCDHA1Q9Y5I3 VTRNA1-3-201ENST00000365645 89 ntBASIC0.45□□□□□ -2.34
PCDHA1Q9Y5I3 RNU1-29P-201ENST00000606574 126 ntBASIC0.45□□□□□ -2.34
PCDHA1Q9Y5I3 AC093423.1-201ENST00000440817 142 ntBASIC0.44□□□□□ -2.34
PCDHA1Q9Y5I3 MIR1273G-201ENST00000577677 100 ntBASIC0.44□□□□□ -2.34
PCDHA1Q9Y5I3 MIR6755-201ENST00000619993 66 ntBASIC0.44□□□□□ -2.34
PCDHA1Q9Y5I3 SNORA50A-201ENST00000384225 134 ntBASIC0.43□□□□□ -2.34
PCDHA1Q9Y5I3 MIR548U-201ENST00000390728 81 ntBASIC0.43□□□□□ -2.34
PCDHA1Q9Y5I3 RNU6-935P-201ENST00000410371 100 ntBASIC0.43□□□□□ -2.34
PCDHA1Q9Y5I3 AC026421.1-201ENST00000519101 163 ntBASIC0.43□□□□□ -2.34
PCDHA1Q9Y5I3 MIR103A1-201ENST00000362165 78 ntBASIC0.42□□□□□ -2.34
PCDHA1Q9Y5I3 RNU1-141P-201ENST00000364623 158 ntBASIC0.42□□□□□ -2.34
PCDHA1Q9Y5I3 SNORA2A-201ENST00000383885 135 ntBASIC0.42□□□□□ -2.34
PCDHA1Q9Y5I3 MIR216B-201ENST00000390186 82 ntBASIC0.42□□□□□ -2.34
PCDHA1Q9Y5I3 Y_RNA.609-201ENST00000410669 89 ntBASIC0.42□□□□□ -2.34
PCDHA1Q9Y5I3 MIR4752-201ENST00000579672 72 ntBASIC0.42□□□□□ -2.34
PCDHA1Q9Y5I3 RNU6-1327P-201ENST00000365302 105 ntBASIC0.41□□□□□ -2.34
PCDHA1Q9Y5I3 MIR488-201ENST00000365739 83 ntBASIC0.41□□□□□ -2.34
PCDHA1Q9Y5I3 RNU6-1057P-201ENST00000517162 102 ntBASIC0.41□□□□□ -2.34
PCDHA1Q9Y5I3 MIR3064-201ENST00000581130 66 ntBASIC0.41□□□□□ -2.34
PCDHA1Q9Y5I3 MIRLET7F1-201ENST00000362202 87 ntBASIC0.4□□□□□ -2.35
PCDHA1Q9Y5I3 RNU6-132P-201ENST00000383863 107 ntBASIC0.4□□□□□ -2.35
PCDHA1Q9Y5I3 Y_RNA.423-201ENST00000384057 113 ntBASIC0.4□□□□□ -2.35
PCDHA1Q9Y5I3 RNU6-811P-201ENST00000384069 107 ntBASIC0.4□□□□□ -2.35
PCDHA1Q9Y5I3 RNA5SP484-201ENST00000458857 111 ntBASIC0.4□□□□□ -2.35
PCDHA1Q9Y5I3 Y_RNA.694-201ENST00000516677 117 ntBASIC0.4□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 321.6 ms