Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 RNU6-716P-201ENST00000365621 103 ntBASIC1.17□□□□□ -2.22
CCDC9Q9Y3X0 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
CCDC9Q9Y3X0 RNU6-519P-201ENST00000410590 108 ntBASIC1.17□□□□□ -2.22
CCDC9Q9Y3X0 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.17□□□□□ -2.22
CCDC9Q9Y3X0 RNA5SP257-201ENST00000363023 116 ntBASIC1.16□□□□□ -2.22
CCDC9Q9Y3X0 SNORD115-27-201ENST00000364430 82 ntBASIC1.16□□□□□ -2.22
CCDC9Q9Y3X0 Y_RNA.244-201ENST00000364484 109 ntBASIC1.16□□□□□ -2.22
CCDC9Q9Y3X0 RNU6-857P-201ENST00000515893 110 ntBASIC1.16□□□□□ -2.22
CCDC9Q9Y3X0 RNU6-850P-201ENST00000516934 103 ntBASIC1.16□□□□□ -2.22
CCDC9Q9Y3X0 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.16□□□□□ -2.22
CCDC9Q9Y3X0 SNORD115-37-201ENST00000363768 82 ntBASIC1.15□□□□□ -2.23
CCDC9Q9Y3X0 RNU6-652P-201ENST00000365488 107 ntBASIC1.15□□□□□ -2.23
CCDC9Q9Y3X0 RNU6-24P-201ENST00000384440 107 ntBASIC1.15□□□□□ -2.23
CCDC9Q9Y3X0 AC093729.1-201ENST00000513074 128 ntBASIC1.15□□□□□ -2.23
CCDC9Q9Y3X0 RNU6-765P-201ENST00000516916 99 ntBASIC1.15□□□□□ -2.23
CCDC9Q9Y3X0 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC1.15□□□□□ -2.23
CCDC9Q9Y3X0 Y_RNA.316-201ENST00000365118 111 ntBASIC1.14□□□□□ -2.23
CCDC9Q9Y3X0 RNA5SP117-201ENST00000365294 118 ntBASIC1.14□□□□□ -2.23
CCDC9Q9Y3X0 RNU6-524P-201ENST00000384270 107 ntBASIC1.14□□□□□ -2.23
CCDC9Q9Y3X0 SNORD100-201ENST00000408573 76 ntBASIC1.14□□□□□ -2.23
CCDC9Q9Y3X0 BX276092.1-201ENST00000427368 251 ntBASIC1.14□□□□□ -2.23
CCDC9Q9Y3X0 SNORD4B-201ENST00000459083 72 ntBASIC1.14□□□□□ -2.23
CCDC9Q9Y3X0 MIR8087-201ENST00000612745 78 ntBASIC1.14□□□□□ -2.23
CCDC9Q9Y3X0 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
CCDC9Q9Y3X0 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
CCDC9Q9Y3X0 MIR1236-201ENST00000408340 102 ntBASIC1.13□□□□□ -2.23
CCDC9Q9Y3X0 Y_RNA.648-201ENST00000459455 110 ntBASIC1.13□□□□□ -2.23
CCDC9Q9Y3X0 AC002350.1-201ENST00000490759 375 ntBASIC1.13□□□□□ -2.23
CCDC9Q9Y3X0 RNU4-58P-201ENST00000363192 141 ntBASIC1.12□□□□□ -2.23
CCDC9Q9Y3X0 MIR508-201ENST00000384857 115 ntBASIC1.12□□□□□ -2.23
CCDC9Q9Y3X0 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC1.12□□□□□ -2.23
CCDC9Q9Y3X0 MIR6835-201ENST00000621552 64 ntBASIC1.12□□□□□ -2.23
CCDC9Q9Y3X0 MIR18A-201ENST00000362310 71 ntBASIC1.11□□□□□ -2.23
CCDC9Q9Y3X0 Y_RNA.221-201ENST00000364248 96 ntBASIC1.11□□□□□ -2.23
CCDC9Q9Y3X0 RNU6-531P-201ENST00000516694 104 ntBASIC1.11□□□□□ -2.23
CCDC9Q9Y3X0 SNORA25.16-201ENST00000516741 121 ntBASIC1.11□□□□□ -2.23
CCDC9Q9Y3X0 AC140658.3-201ENST00000567603 271 ntBASIC1.11□□□□□ -2.23
CCDC9Q9Y3X0 SNORD36A-201ENST00000362874 73 ntBASIC1.1□□□□□ -2.23
CCDC9Q9Y3X0 RNU4-32P-201ENST00000363404 141 ntBASIC1.1□□□□□ -2.23
CCDC9Q9Y3X0 RNU6-1296P-201ENST00000383879 107 ntBASIC1.1□□□□□ -2.23
CCDC9Q9Y3X0 MIR516A2-201ENST00000384888 90 ntBASIC1.1□□□□□ -2.23
CCDC9Q9Y3X0 MIR516A1-201ENST00000385033 90 ntBASIC1.1□□□□□ -2.23
CCDC9Q9Y3X0 RNU6-243P-201ENST00000391140 107 ntBASIC1.1□□□□□ -2.23
CCDC9Q9Y3X0 RNU6-1254P-201ENST00000391266 104 ntBASIC1.1□□□□□ -2.23
CCDC9Q9Y3X0 AL606490.4-201ENST00000423117 127 ntBASIC1.1□□□□□ -2.23
CCDC9Q9Y3X0 RNU7-85P-201ENST00000458851 63 ntBASIC1.1□□□□□ -2.23
CCDC9Q9Y3X0 RNA5SP121-201ENST00000516537 101 ntBASIC1.1□□□□□ -2.23
CCDC9Q9Y3X0 MIR4662A-201ENST00000637499 67 ntBASIC1.1□□□□□ -2.23
CCDC9Q9Y3X0 Y_RNA.94-201ENST00000363068 106 ntBASIC1.09□□□□□ -2.23
CCDC9Q9Y3X0 RNU6-1194P-201ENST00000516208 104 ntBASIC1.09□□□□□ -2.23
CCDC9Q9Y3X0 SNORA25.13-201ENST00000516395 103 ntBASIC1.09□□□□□ -2.23
CCDC9Q9Y3X0 RNU7-153P-201ENST00000516455 62 ntBASIC1.09□□□□□ -2.23
CCDC9Q9Y3X0 MIR4712-201ENST00000583750 82 ntBASIC1.09□□□□□ -2.23
CCDC9Q9Y3X0 AC103810.9-201ENST00000606688 112 ntBASIC1.09□□□□□ -2.23
CCDC9Q9Y3X0 MIR140-201ENST00000385282 100 ntBASIC1.08□□□□□ -2.24
CCDC9Q9Y3X0 RNU6ATAC27P-201ENST00000408289 119 ntBASIC1.08□□□□□ -2.24
CCDC9Q9Y3X0 snoU13.11-201ENST00000459219 104 ntBASIC1.08□□□□□ -2.24
CCDC9Q9Y3X0 RNU6-65P-201ENST00000516332 98 ntBASIC1.08□□□□□ -2.24
CCDC9Q9Y3X0 Y_RNA.697-201ENST00000516776 113 ntBASIC1.08□□□□□ -2.24
CCDC9Q9Y3X0 MIR101-2-201ENST00000362195 79 ntBASIC1.07□□□□□ -2.24
CCDC9Q9Y3X0 MIR1197-201ENST00000408818 88 ntBASIC1.07□□□□□ -2.24
CCDC9Q9Y3X0 SNORD63B-201ENST00000411005 70 ntBASIC1.07□□□□□ -2.24
CCDC9Q9Y3X0 RNU7-106P-201ENST00000459514 67 ntBASIC1.07□□□□□ -2.24
CCDC9Q9Y3X0 RNU6-469P-201ENST00000516253 101 ntBASIC1.07□□□□□ -2.24
CCDC9Q9Y3X0 MIR4536-1-201ENST00000583537 88 ntBASIC1.07□□□□□ -2.24
CCDC9Q9Y3X0 RNU7-10P-201ENST00000607194 63 ntBASIC1.07□□□□□ -2.24
CCDC9Q9Y3X0 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
CCDC9Q9Y3X0 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC1.07□□□□□ -2.24
CCDC9Q9Y3X0 RNU6-315P-201ENST00000362666 107 ntBASIC1.06□□□□□ -2.24
CCDC9Q9Y3X0 RNU6-776P-201ENST00000364403 104 ntBASIC1.06□□□□□ -2.24
CCDC9Q9Y3X0 Y_RNA.283-201ENST00000364798 112 ntBASIC1.06□□□□□ -2.24
CCDC9Q9Y3X0 RNU6-1022P-201ENST00000365049 104 ntBASIC1.06□□□□□ -2.24
CCDC9Q9Y3X0 RNU6-811P-201ENST00000384069 107 ntBASIC1.06□□□□□ -2.24
CCDC9Q9Y3X0 MIR635-201ENST00000384830 98 ntBASIC1.06□□□□□ -2.24
CCDC9Q9Y3X0 RNU6-129P-201ENST00000391022 107 ntBASIC1.06□□□□□ -2.24
CCDC9Q9Y3X0 RNU6-466P-201ENST00000391224 103 ntBASIC1.06□□□□□ -2.24
CCDC9Q9Y3X0 MIR548H5-201ENST00000580314 60 ntBASIC1.06□□□□□ -2.24
CCDC9Q9Y3X0 MIR4796-201ENST00000580742 81 ntBASIC1.06□□□□□ -2.24
CCDC9Q9Y3X0 AC013244.2-201ENST00000603396 103 ntBASIC1.06□□□□□ -2.24
CCDC9Q9Y3X0 RNU6-624P-201ENST00000363411 107 ntBASIC1.05□□□□□ -2.24
CCDC9Q9Y3X0 Y_RNA.536-201ENST00000384621 113 ntBASIC1.05□□□□□ -2.24
CCDC9Q9Y3X0 MIR146A-201ENST00000385201 99 ntBASIC1.05□□□□□ -2.24
CCDC9Q9Y3X0 RNA5SP193-201ENST00000410353 107 ntBASIC1.05□□□□□ -2.24
CCDC9Q9Y3X0 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.05□□□□□ -2.24
CCDC9Q9Y3X0 RNA5SP476-201ENST00000516613 103 ntBASIC1.05□□□□□ -2.24
CCDC9Q9Y3X0 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.05□□□□□ -2.24
CCDC9Q9Y3X0 Y_RNA.56-201ENST00000362798 112 ntBASIC1.04□□□□□ -2.24
CCDC9Q9Y3X0 MIR519A1-201ENST00000385257 85 ntBASIC1.04□□□□□ -2.24
CCDC9Q9Y3X0 MIR548U-201ENST00000390728 81 ntBASIC1.04□□□□□ -2.24
CCDC9Q9Y3X0 RNU6-75P-201ENST00000515944 104 ntBASIC1.04□□□□□ -2.24
CCDC9Q9Y3X0 MIR330-201ENST00000362196 94 ntBASIC1.03□□□□□ -2.24
CCDC9Q9Y3X0 Y_RNA.174-201ENST00000363781 105 ntBASIC1.03□□□□□ -2.24
CCDC9Q9Y3X0 RNY1P8-201ENST00000383970 114 ntBASIC1.03□□□□□ -2.24
CCDC9Q9Y3X0 RNA5SP292-201ENST00000390974 118 ntBASIC1.03□□□□□ -2.24
CCDC9Q9Y3X0 AL450471.1-201ENST00000447509 127 ntBASIC1.03□□□□□ -2.24
CCDC9Q9Y3X0 TRAJ51-201ENST00000504127 63 ntBASIC1.03□□□□□ -2.24
CCDC9Q9Y3X0 SNORA18.5-201ENST00000516616 101 ntBASIC1.03□□□□□ -2.24
CCDC9Q9Y3X0 RNU6-557P-201ENST00000516842 110 ntBASIC1.03□□□□□ -2.24
CCDC9Q9Y3X0 MIR4711-201ENST00000578274 70 ntBASIC1.03□□□□□ -2.24
CCDC9Q9Y3X0 MIR3064-201ENST00000581130 66 ntBASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 229.5 ms