Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
ZC3H4Q9UPT8 SNORA67.6-201ENST00000391093 99 ntBASIC1.98□□□□□ -2.09
ZC3H4Q9UPT8 MIR517C-201ENST00000385103 95 ntBASIC1.97□□□□□ -2.09
ZC3H4Q9UPT8 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.97□□□□□ -2.09
ZC3H4Q9UPT8 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.97□□□□□ -2.09
ZC3H4Q9UPT8 AC074348.1-201ENST00000426503 132 ntBASIC1.97□□□□□ -2.09
ZC3H4Q9UPT8 SNORD79.1-201ENST00000516069 84 ntBASIC1.97□□□□□ -2.09
ZC3H4Q9UPT8 RNU6-1265P-201ENST00000516342 103 ntBASIC1.97□□□□□ -2.09
ZC3H4Q9UPT8 MIR154-201ENST00000385243 84 ntBASIC1.96□□□□□ -2.1
ZC3H4Q9UPT8 RNU6-587P-201ENST00000391282 106 ntBASIC1.96□□□□□ -2.1
ZC3H4Q9UPT8 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.95□□□□□ -2.1
ZC3H4Q9UPT8 SNORA70.22-201ENST00000517160 124 ntBASIC1.95□□□□□ -2.1
ZC3H4Q9UPT8 SNORA31.24-201ENST00000517232 57 ntBASIC1.95□□□□□ -2.1
ZC3H4Q9UPT8 MTRNR2L2-201ENST00000604882 87 ntBASIC1.95□□□□□ -2.1
ZC3H4Q9UPT8 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
ZC3H4Q9UPT8 RNU6-369P-201ENST00000362515 102 ntBASIC1.94□□□□□ -2.1
ZC3H4Q9UPT8 RNU6-330P-201ENST00000363015 107 ntBASIC1.94□□□□□ -2.1
ZC3H4Q9UPT8 RNU6-340P-201ENST00000364005 107 ntBASIC1.94□□□□□ -2.1
ZC3H4Q9UPT8 RNU6-154P-201ENST00000384306 106 ntBASIC1.94□□□□□ -2.1
ZC3H4Q9UPT8 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
ZC3H4Q9UPT8 RPS29P23-201ENST00000458635 123 ntBASIC1.94□□□□□ -2.1
ZC3H4Q9UPT8 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.94□□□□□ -2.1
ZC3H4Q9UPT8 AL353770.2-201ENST00000620024 78 ntBASIC1.94□□□□□ -2.1
ZC3H4Q9UPT8 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
ZC3H4Q9UPT8 Y_RNA.32-201ENST00000362589 110 ntBASIC1.93□□□□□ -2.1
ZC3H4Q9UPT8 RNU6-681P-201ENST00000364012 104 ntBASIC1.93□□□□□ -2.1
ZC3H4Q9UPT8 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
ZC3H4Q9UPT8 RNU7-56P-201ENST00000458744 62 ntBASIC1.93□□□□□ -2.1
ZC3H4Q9UPT8 RNU6-687P-201ENST00000516443 89 ntBASIC1.93□□□□□ -2.1
ZC3H4Q9UPT8 PVT1_3.1-201ENST00000620853 95 ntBASIC1.93□□□□□ -2.1
ZC3H4Q9UPT8 Y_RNA.36-201ENST00000362602 112 ntBASIC1.92□□□□□ -2.1
ZC3H4Q9UPT8 AC244505.6-201ENST00000452829 130 ntBASIC1.92□□□□□ -2.1
ZC3H4Q9UPT8 RNU6-634P-201ENST00000459134 106 ntBASIC1.92□□□□□ -2.1
ZC3H4Q9UPT8 RNU7-13P-201ENST00000516413 62 ntBASIC1.92□□□□□ -2.1
ZC3H4Q9UPT8 SNORA31.14-201ENST00000516728 116 ntBASIC1.92□□□□□ -2.1
ZC3H4Q9UPT8 RNU6-590P-201ENST00000365039 107 ntBASIC1.91□□□□□ -2.1
ZC3H4Q9UPT8 RNU6-1241P-201ENST00000384536 107 ntBASIC1.91□□□□□ -2.1
ZC3H4Q9UPT8 RNU6-539P-201ENST00000516665 103 ntBASIC1.91□□□□□ -2.1
ZC3H4Q9UPT8 RNU1-92P-201ENST00000517017 135 ntBASIC1.91□□□□□ -2.1
ZC3H4Q9UPT8 MIR4419B-201ENST00000577260 68 ntBASIC1.91□□□□□ -2.1
ZC3H4Q9UPT8 MIR6515-201ENST00000619843 57 ntBASIC1.91□□□□□ -2.1
ZC3H4Q9UPT8 SNORD115-24-201ENST00000363528 82 ntBASIC1.91□□□□□ -2.1
ZC3H4Q9UPT8 SNORD30.1-201ENST00000391309 70 ntBASIC1.91□□□□□ -2.1
ZC3H4Q9UPT8 AC097510.1-201ENST00000510945 133 ntBASIC1.91□□□□□ -2.1
ZC3H4Q9UPT8 RNU6-287P-201ENST00000516230 98 ntBASIC1.91□□□□□ -2.1
ZC3H4Q9UPT8 MIR3122-201ENST00000577243 73 ntBASIC1.91□□□□□ -2.1
ZC3H4Q9UPT8 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.9□□□□□ -2.1
ZC3H4Q9UPT8 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.9□□□□□ -2.11
ZC3H4Q9UPT8 MIR942-201ENST00000401111 86 ntBASIC1.9□□□□□ -2.11
ZC3H4Q9UPT8 MIR6078-201ENST00000611069 100 ntBASIC1.9□□□□□ -2.11
ZC3H4Q9UPT8 DLEU2_3.2-201ENST00000612883 73 ntBASIC1.9□□□□□ -2.11
ZC3H4Q9UPT8 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.9□□□□□ -2.11
ZC3H4Q9UPT8 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.89□□□□□ -2.11
ZC3H4Q9UPT8 Y_RNA.374-201ENST00000365606 101 ntBASIC1.89□□□□□ -2.11
ZC3H4Q9UPT8 RNU6-649P-201ENST00000384463 107 ntBASIC1.89□□□□□ -2.11
ZC3H4Q9UPT8 RNU7-104P-201ENST00000459398 79 ntBASIC1.89□□□□□ -2.11
ZC3H4Q9UPT8 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.89□□□□□ -2.11
ZC3H4Q9UPT8 MIR4773-1-201ENST00000637203 78 ntBASIC1.89□□□□□ -2.11
ZC3H4Q9UPT8 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
ZC3H4Q9UPT8 RNU6-824P-201ENST00000363724 104 ntBASIC1.88□□□□□ -2.11
ZC3H4Q9UPT8 Y_RNA.174-201ENST00000363781 105 ntBASIC1.88□□□□□ -2.11
ZC3H4Q9UPT8 RNU1-93P-201ENST00000364704 169 ntBASIC1.88□□□□□ -2.11
ZC3H4Q9UPT8 SNORA25.8-201ENST00000364831 128 ntBASIC1.88□□□□□ -2.11
ZC3H4Q9UPT8 SNORD115-44-201ENST00000365391 82 ntBASIC1.88□□□□□ -2.11
ZC3H4Q9UPT8 MIR1827-201ENST00000408549 66 ntBASIC1.88□□□□□ -2.11
ZC3H4Q9UPT8 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.88□□□□□ -2.11
ZC3H4Q9UPT8 RNA5SP363-201ENST00000365072 115 ntBASIC1.87□□□□□ -2.11
ZC3H4Q9UPT8 RNU2-59P-201ENST00000410482 191 ntBASIC1.87□□□□□ -2.11
ZC3H4Q9UPT8 uc_338.16-201ENST00000621804 95 ntBASIC1.87□□□□□ -2.11
ZC3H4Q9UPT8 MIR2113-201ENST00000459007 91 ntBASIC1.86□□□□□ -2.11
ZC3H4Q9UPT8 MIR3675-201ENST00000583661 73 ntBASIC1.86□□□□□ -2.11
ZC3H4Q9UPT8 U6.81-201ENST00000612550 106 ntBASIC1.86□□□□□ -2.11
ZC3H4Q9UPT8 SNORA24B-201ENST00000384176 131 ntBASIC1.85□□□□□ -2.11
ZC3H4Q9UPT8 RNU6-1177P-201ENST00000391058 104 ntBASIC1.85□□□□□ -2.11
ZC3H4Q9UPT8 MIR1323-201ENST00000408090 73 ntBASIC1.85□□□□□ -2.11
ZC3H4Q9UPT8 RNU6-1223P-201ENST00000517124 104 ntBASIC1.85□□□□□ -2.11
ZC3H4Q9UPT8 AL136317.1-201ENST00000612653 226 ntBASIC1.85□□□□□ -2.11
ZC3H4Q9UPT8 MIR96-201ENST00000362288 78 ntBASIC1.84□□□□□ -2.12
ZC3H4Q9UPT8 Y_RNA.340-201ENST00000365330 92 ntBASIC1.84□□□□□ -2.12
ZC3H4Q9UPT8 MIR598-201ENST00000384868 97 ntBASIC1.84□□□□□ -2.12
ZC3H4Q9UPT8 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC1.84□□□□□ -2.12
ZC3H4Q9UPT8 Y_RNA.606-201ENST00000410579 103 ntBASIC1.84□□□□□ -2.12
ZC3H4Q9UPT8 RNU6-274P-201ENST00000459566 107 ntBASIC1.84□□□□□ -2.12
ZC3H4Q9UPT8 AC125388.1-201ENST00000459631 156 ntBASIC1.84□□□□□ -2.12
ZC3H4Q9UPT8 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
ZC3H4Q9UPT8 RNA5SP117-201ENST00000365294 118 ntBASIC1.83□□□□□ -2.12
ZC3H4Q9UPT8 RNU6-997P-201ENST00000384725 107 ntBASIC1.83□□□□□ -2.12
ZC3H4Q9UPT8 SNORD89-201ENST00000390981 114 ntBASIC1.83□□□□□ -2.12
ZC3H4Q9UPT8 SNORD12-201ENST00000391002 90 ntBASIC1.83□□□□□ -2.12
ZC3H4Q9UPT8 SNORD115-31-201ENST00000365318 82 ntBASIC1.82□□□□□ -2.12
ZC3H4Q9UPT8 AC002429.1-201ENST00000437672 148 ntBASIC1.82□□□□□ -2.12
ZC3H4Q9UPT8 RNU6-895P-201ENST00000384125 103 ntBASIC1.81□□□□□ -2.12
ZC3H4Q9UPT8 SNORD26-201ENST00000384147 75 ntBASIC1.81□□□□□ -2.12
ZC3H4Q9UPT8 RNU6-663P-201ENST00000391105 106 ntBASIC1.81□□□□□ -2.12
ZC3H4Q9UPT8 U3.27-201ENST00000391237 200 ntBASIC1.81□□□□□ -2.12
ZC3H4Q9UPT8 RNU7-161P-201ENST00000517289 62 ntBASIC1.81□□□□□ -2.12
ZC3H4Q9UPT8 MIR151B-201ENST00000584249 96 ntBASIC1.81□□□□□ -2.12
ZC3H4Q9UPT8 TRAJ37-201ENST00000612375 65 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
ZC3H4Q9UPT8 RNU6-1126P-201ENST00000384002 107 ntBASIC1.8□□□□□ -2.12
ZC3H4Q9UPT8 RNU6-540P-201ENST00000384622 101 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 193.7 ms