Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SNORD111-201ENST00000408139 94 ntBASIC1.64□□□□□ -2.15
CCDC39Q9UFE4 AL354695.1-201ENST00000427935 228 ntBASIC1.64□□□□□ -2.15
CCDC39Q9UFE4 RPS29P23-201ENST00000458635 123 ntBASIC1.64□□□□□ -2.15
CCDC39Q9UFE4 RNU7-102P-201ENST00000458948 62 ntBASIC1.64□□□□□ -2.15
CCDC39Q9UFE4 RNU6-977P-201ENST00000516411 103 ntBASIC1.64□□□□□ -2.15
CCDC39Q9UFE4 MIR548AG2-201ENST00000581228 64 ntBASIC1.64□□□□□ -2.15
CCDC39Q9UFE4 AC027335.2-201ENST00000624030 375 ntBASIC1.64□□□□□ -2.15
CCDC39Q9UFE4 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.64□□□□□ -2.15
CCDC39Q9UFE4 RNU6-495P-201ENST00000362995 107 ntBASIC1.63□□□□□ -2.15
CCDC39Q9UFE4 AL591806.2-201ENST00000433122 173 ntBASIC1.63□□□□□ -2.15
CCDC39Q9UFE4 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.63□□□□□ -2.15
CCDC39Q9UFE4 RNU7-24P-201ENST00000458867 62 ntBASIC1.63□□□□□ -2.15
CCDC39Q9UFE4 RNU7-13P-201ENST00000516413 62 ntBASIC1.63□□□□□ -2.15
CCDC39Q9UFE4 AL512310.8-201ENST00000550183 120 ntBASIC1.63□□□□□ -2.15
CCDC39Q9UFE4 AC023827.1-201ENST00000569247 97 ntBASIC1.63□□□□□ -2.15
CCDC39Q9UFE4 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.63□□□□□ -2.15
CCDC39Q9UFE4 RNA5SP432-201ENST00000362480 116 ntBASIC1.62□□□□□ -2.15
CCDC39Q9UFE4 RNU6-369P-201ENST00000362515 102 ntBASIC1.62□□□□□ -2.15
CCDC39Q9UFE4 Y_RNA.363-201ENST00000365529 113 ntBASIC1.62□□□□□ -2.15
CCDC39Q9UFE4 RNU6-1039P-201ENST00000383931 107 ntBASIC1.62□□□□□ -2.15
CCDC39Q9UFE4 RNU6-1126P-201ENST00000384002 107 ntBASIC1.62□□□□□ -2.15
CCDC39Q9UFE4 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.62□□□□□ -2.15
CCDC39Q9UFE4 NAMPTP3-201ENST00000569273 224 ntBASIC1.62□□□□□ -2.15
CCDC39Q9UFE4 RNU6-668P-201ENST00000364180 107 ntBASIC1.61□□□□□ -2.15
CCDC39Q9UFE4 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
CCDC39Q9UFE4 MTND4LP1-201ENST00000446263 157 ntBASIC1.61□□□□□ -2.15
CCDC39Q9UFE4 MIR3920-201ENST00000581751 86 ntBASIC1.61□□□□□ -2.15
CCDC39Q9UFE4 MIR6509-201ENST00000614603 85 ntBASIC1.61□□□□□ -2.15
CCDC39Q9UFE4 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
CCDC39Q9UFE4 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
CCDC39Q9UFE4 RNA5SP403-201ENST00000363598 108 ntBASIC1.6□□□□□ -2.15
CCDC39Q9UFE4 RNU6-542P-201ENST00000516405 103 ntBASIC1.6□□□□□ -2.15
CCDC39Q9UFE4 MIR4524B-201ENST00000581569 115 ntBASIC1.6□□□□□ -2.15
CCDC39Q9UFE4 MIR4804-201ENST00000581683 73 ntBASIC1.6□□□□□ -2.15
CCDC39Q9UFE4 Y_RNA.32-201ENST00000362589 110 ntBASIC1.59□□□□□ -2.15
CCDC39Q9UFE4 RNU1-17P-201ENST00000363022 152 ntBASIC1.59□□□□□ -2.15
CCDC39Q9UFE4 SNORD115-24-201ENST00000363528 82 ntBASIC1.59□□□□□ -2.15
CCDC39Q9UFE4 RNU6-829P-201ENST00000363700 112 ntBASIC1.59□□□□□ -2.15
CCDC39Q9UFE4 Y_RNA.375-201ENST00000365625 101 ntBASIC1.59□□□□□ -2.15
CCDC39Q9UFE4 MIR203A-201ENST00000384836 110 ntBASIC1.59□□□□□ -2.15
CCDC39Q9UFE4 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.59□□□□□ -2.15
CCDC39Q9UFE4 RNU7-56P-201ENST00000458744 62 ntBASIC1.59□□□□□ -2.15
CCDC39Q9UFE4 SNORA31.2-201ENST00000516019 134 ntBASIC1.59□□□□□ -2.15
CCDC39Q9UFE4 SNORA31.14-201ENST00000516728 116 ntBASIC1.59□□□□□ -2.15
CCDC39Q9UFE4 AC092634.7-201ENST00000621022 103 ntBASIC1.59□□□□□ -2.15
CCDC39Q9UFE4 uc_338.16-201ENST00000621804 95 ntBASIC1.59□□□□□ -2.15
CCDC39Q9UFE4 AC073869.9-201ENST00000641610 120 ntBASIC1.59□□□□□ -2.15
CCDC39Q9UFE4 MIR216B-201ENST00000390186 82 ntBASIC1.58□□□□□ -2.16
CCDC39Q9UFE4 RNU7-161P-201ENST00000517289 62 ntBASIC1.58□□□□□ -2.16
CCDC39Q9UFE4 MIR758-201ENST00000390227 88 ntBASIC1.57□□□□□ -2.16
CCDC39Q9UFE4 RNU1-119P-201ENST00000391122 165 ntBASIC1.57□□□□□ -2.16
CCDC39Q9UFE4 RN7SKP88-201ENST00000516847 250 ntBASIC1.57□□□□□ -2.16
CCDC39Q9UFE4 7SK.8-201ENST00000612110 250 ntBASIC1.57□□□□□ -2.16
CCDC39Q9UFE4 7SK.11-201ENST00000615477 250 ntBASIC1.57□□□□□ -2.16
CCDC39Q9UFE4 AL157834.3-201ENST00000615543 103 ntBASIC1.57□□□□□ -2.16
CCDC39Q9UFE4 MIR548O2-201ENST00000616090 70 ntBASIC1.57□□□□□ -2.16
CCDC39Q9UFE4 7SK.13-201ENST00000622040 250 ntBASIC1.57□□□□□ -2.16
CCDC39Q9UFE4 Y_RNA.236-201ENST00000364427 111 ntBASIC1.56□□□□□ -2.16
CCDC39Q9UFE4 RNU6-54P-201ENST00000365563 107 ntBASIC1.56□□□□□ -2.16
CCDC39Q9UFE4 MIR617-201ENST00000385030 97 ntBASIC1.56□□□□□ -2.16
CCDC39Q9UFE4 MIR764-201ENST00000390811 85 ntBASIC1.56□□□□□ -2.16
CCDC39Q9UFE4 AL591704.2-201ENST00000421658 181 ntBASIC1.56□□□□□ -2.16
CCDC39Q9UFE4 RNU7-21P-201ENST00000459430 62 ntBASIC1.56□□□□□ -2.16
CCDC39Q9UFE4 MIR4769-201ENST00000584126 77 ntBASIC1.56□□□□□ -2.16
CCDC39Q9UFE4 RNU6-1079P-201ENST00000362861 110 ntBASIC1.55□□□□□ -2.16
CCDC39Q9UFE4 SNORA25.5-201ENST00000363782 126 ntBASIC1.55□□□□□ -2.16
CCDC39Q9UFE4 RNA5SP192-201ENST00000364404 120 ntBASIC1.55□□□□□ -2.16
CCDC39Q9UFE4 MIR150-201ENST00000385048 84 ntBASIC1.55□□□□□ -2.16
CCDC39Q9UFE4 MIR519E-201ENST00000385075 84 ntBASIC1.55□□□□□ -2.16
CCDC39Q9UFE4 RNU6-994P-201ENST00000410507 111 ntBASIC1.55□□□□□ -2.16
CCDC39Q9UFE4 snoU13.23-201ENST00000458863 104 ntBASIC1.55□□□□□ -2.16
CCDC39Q9UFE4 AC108210.2-201ENST00000503681 201 ntBASIC1.55□□□□□ -2.16
CCDC39Q9UFE4 AC068338.1-201ENST00000565567 176 ntBASIC1.55□□□□□ -2.16
CCDC39Q9UFE4 MIR4303-201ENST00000581299 66 ntBASIC1.55□□□□□ -2.16
CCDC39Q9UFE4 MIR3657-201ENST00000584818 117 ntBASIC1.55□□□□□ -2.16
CCDC39Q9UFE4 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.54□□□□□ -2.16
CCDC39Q9UFE4 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.54□□□□□ -2.16
CCDC39Q9UFE4 Y_RNA.174-201ENST00000363781 105 ntBASIC1.54□□□□□ -2.16
CCDC39Q9UFE4 RNU6-645P-201ENST00000364649 106 ntBASIC1.54□□□□□ -2.16
CCDC39Q9UFE4 AC067940.1-201ENST00000458411 300 ntBASIC1.54□□□□□ -2.16
CCDC39Q9UFE4 RNU7-104P-201ENST00000459398 79 ntBASIC1.54□□□□□ -2.16
CCDC39Q9UFE4 AL359821.1-201ENST00000605519 182 ntBASIC1.54□□□□□ -2.16
CCDC39Q9UFE4 SNORD26-201ENST00000384147 75 ntBASIC1.53□□□□□ -2.16
CCDC39Q9UFE4 MIR100-201ENST00000385259 80 ntBASIC1.53□□□□□ -2.16
CCDC39Q9UFE4 SNORD42B-201ENST00000458893 67 ntBASIC1.53□□□□□ -2.16
CCDC39Q9UFE4 RNU1-92P-201ENST00000517017 135 ntBASIC1.53□□□□□ -2.16
CCDC39Q9UFE4 AC015712.3-201ENST00000559380 164 ntBASIC1.53□□□□□ -2.16
CCDC39Q9UFE4 MIR466-201ENST00000580653 84 ntBASIC1.53□□□□□ -2.16
CCDC39Q9UFE4 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.53□□□□□ -2.16
CCDC39Q9UFE4 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
CCDC39Q9UFE4 RNA5SP99-201ENST00000364020 114 ntBASIC1.52□□□□□ -2.17
CCDC39Q9UFE4 RNU6-260P-201ENST00000384092 107 ntBASIC1.52□□□□□ -2.17
CCDC39Q9UFE4 MIR520F-201ENST00000384824 87 ntBASIC1.52□□□□□ -2.17
CCDC39Q9UFE4 RNU1-123P-201ENST00000458950 160 ntBASIC1.52□□□□□ -2.17
CCDC39Q9UFE4 RNU7-90P-201ENST00000459216 62 ntBASIC1.52□□□□□ -2.17
CCDC39Q9UFE4 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
CCDC39Q9UFE4 MIR1-1-201ENST00000362147 71 ntBASIC1.51□□□□□ -2.17
CCDC39Q9UFE4 RNU6-940P-201ENST00000363433 104 ntBASIC1.51□□□□□ -2.17
CCDC39Q9UFE4 SNORA80D-201ENST00000384488 135 ntBASIC1.51□□□□□ -2.17
CCDC39Q9UFE4 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms