Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MIR3920-201ENST00000581751 86 ntBASIC0.73□□□□□ -2.29
TRIM39Q9HCM9 MIR6835-201ENST00000621552 64 ntBASIC0.73□□□□□ -2.29
TRIM39Q9HCM9 RNU6-664P-201ENST00000362381 107 ntBASIC0.72□□□□□ -2.29
TRIM39Q9HCM9 MIR489-201ENST00000384923 84 ntBASIC0.72□□□□□ -2.29
TRIM39Q9HCM9 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.72□□□□□ -2.29
TRIM39Q9HCM9 RNA5SP170-201ENST00000517150 101 ntBASIC0.72□□□□□ -2.29
TRIM39Q9HCM9 MTRNR2L2-201ENST00000604882 87 ntBASIC0.72□□□□□ -2.29
TRIM39Q9HCM9 AC022709.1-201ENST00000615967 87 ntBASIC0.72□□□□□ -2.29
TRIM39Q9HCM9 RNU6-945P-201ENST00000383947 107 ntBASIC0.71□□□□□ -2.3
TRIM39Q9HCM9 RNU6-811P-201ENST00000384069 107 ntBASIC0.71□□□□□ -2.3
TRIM39Q9HCM9 RNU6-75P-201ENST00000515944 104 ntBASIC0.71□□□□□ -2.3
TRIM39Q9HCM9 RN7SKP12-201ENST00000516275 143 ntBASIC0.71□□□□□ -2.3
TRIM39Q9HCM9 AC026421.1-201ENST00000519101 163 ntBASIC0.71□□□□□ -2.3
TRIM39Q9HCM9 MIR7107-201ENST00000611489 80 ntBASIC0.71□□□□□ -2.3
TRIM39Q9HCM9 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.71□□□□□ -2.3
TRIM39Q9HCM9 RNU6-509P-201ENST00000363519 107 ntBASIC0.7□□□□□ -2.3
TRIM39Q9HCM9 RNU6-1126P-201ENST00000384002 107 ntBASIC0.7□□□□□ -2.3
TRIM39Q9HCM9 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.7□□□□□ -2.3
TRIM39Q9HCM9 RNU6-844P-201ENST00000517175 102 ntBASIC0.7□□□□□ -2.3
TRIM39Q9HCM9 SNORA25.18-201ENST00000607153 114 ntBASIC0.7□□□□□ -2.3
TRIM39Q9HCM9 MIR6515-201ENST00000619843 57 ntBASIC0.7□□□□□ -2.3
TRIM39Q9HCM9 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
TRIM39Q9HCM9 SNORD118-201ENST00000363593 134 ntBASIC0.69□□□□□ -2.3
TRIM39Q9HCM9 RNU6-1134P-201ENST00000365156 101 ntBASIC0.69□□□□□ -2.3
TRIM39Q9HCM9 RNY1P7-201ENST00000384743 110 ntBASIC0.69□□□□□ -2.3
TRIM39Q9HCM9 MIR617-201ENST00000385030 97 ntBASIC0.69□□□□□ -2.3
TRIM39Q9HCM9 MIR518A1-201ENST00000385068 85 ntBASIC0.69□□□□□ -2.3
TRIM39Q9HCM9 RNU6-935P-201ENST00000410371 100 ntBASIC0.69□□□□□ -2.3
TRIM39Q9HCM9 RNU6-287P-201ENST00000516230 98 ntBASIC0.69□□□□□ -2.3
TRIM39Q9HCM9 RNU4-54P-201ENST00000516428 129 ntBASIC0.69□□□□□ -2.3
TRIM39Q9HCM9 MIR5000-201ENST00000577717 103 ntBASIC0.69□□□□□ -2.3
TRIM39Q9HCM9 MIR4696-201ENST00000581431 70 ntBASIC0.69□□□□□ -2.3
TRIM39Q9HCM9 Y_RNA.207-201ENST00000364142 106 ntBASIC0.68□□□□□ -2.3
TRIM39Q9HCM9 Y_RNA.369-201ENST00000365568 117 ntBASIC0.68□□□□□ -2.3
TRIM39Q9HCM9 MIR216B-201ENST00000390186 82 ntBASIC0.68□□□□□ -2.3
TRIM39Q9HCM9 MIR2113-201ENST00000459007 91 ntBASIC0.68□□□□□ -2.3
TRIM39Q9HCM9 MIR4668-201ENST00000582284 70 ntBASIC0.68□□□□□ -2.3
TRIM39Q9HCM9 RNU4-32P-201ENST00000363404 141 ntBASIC0.67□□□□□ -2.3
TRIM39Q9HCM9 RNY1P4-201ENST00000384595 115 ntBASIC0.67□□□□□ -2.3
TRIM39Q9HCM9 MIR1236-201ENST00000408340 102 ntBASIC0.67□□□□□ -2.3
TRIM39Q9HCM9 MIR5582-201ENST00000579697 68 ntBASIC0.67□□□□□ -2.3
TRIM39Q9HCM9 AC104996.3-201ENST00000590718 94 ntBASIC0.67□□□□□ -2.3
TRIM39Q9HCM9 AC073869.9-201ENST00000641610 120 ntBASIC0.67□□□□□ -2.3
TRIM39Q9HCM9 RNU6-49P-201ENST00000384256 107 ntBASIC0.66□□□□□ -2.3
TRIM39Q9HCM9 MIR508-201ENST00000384857 115 ntBASIC0.66□□□□□ -2.3
TRIM39Q9HCM9 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.66□□□□□ -2.3
TRIM39Q9HCM9 MIR4714-201ENST00000580728 77 ntBASIC0.66□□□□□ -2.3
TRIM39Q9HCM9 MIR3064-201ENST00000581130 66 ntBASIC0.66□□□□□ -2.3
TRIM39Q9HCM9 AL162376.1-201ENST00000624117 175 ntBASIC0.66□□□□□ -2.3
TRIM39Q9HCM9 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
TRIM39Q9HCM9 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.66□□□□□ -2.3
TRIM39Q9HCM9 MIRLET7F1-201ENST00000362202 87 ntBASIC0.65□□□□□ -2.31
TRIM39Q9HCM9 RNU6-863P-201ENST00000515989 104 ntBASIC0.65□□□□□ -2.31
TRIM39Q9HCM9 Y_RNA.491-201ENST00000384417 107 ntBASIC0.64□□□□□ -2.31
TRIM39Q9HCM9 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
TRIM39Q9HCM9 RNU2-59P-201ENST00000410482 191 ntBASIC0.64□□□□□ -2.31
TRIM39Q9HCM9 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.64□□□□□ -2.31
TRIM39Q9HCM9 RNU6-1298P-201ENST00000362456 101 ntBASIC0.63□□□□□ -2.31
TRIM39Q9HCM9 SNORD115-37-201ENST00000363768 82 ntBASIC0.63□□□□□ -2.31
TRIM39Q9HCM9 RNU6-294P-201ENST00000364999 102 ntBASIC0.63□□□□□ -2.31
TRIM39Q9HCM9 MIR519C-201ENST00000385053 87 ntBASIC0.63□□□□□ -2.31
TRIM39Q9HCM9 RNU6-269P-201ENST00000391077 97 ntBASIC0.63□□□□□ -2.31
TRIM39Q9HCM9 AC098934.3-201ENST00000430450 190 ntBASIC0.63□□□□□ -2.31
TRIM39Q9HCM9 RNU6-132P-201ENST00000383863 107 ntBASIC0.62□□□□□ -2.31
TRIM39Q9HCM9 Y_RNA.558-201ENST00000384685 113 ntBASIC0.62□□□□□ -2.31
TRIM39Q9HCM9 RNU6-633P-201ENST00000362612 103 ntBASIC0.61□□□□□ -2.31
TRIM39Q9HCM9 RNY4P3-201ENST00000365254 95 ntBASIC0.61□□□□□ -2.31
TRIM39Q9HCM9 MIR598-201ENST00000384868 97 ntBASIC0.61□□□□□ -2.31
TRIM39Q9HCM9 MIR451A-201ENST00000385059 72 ntBASIC0.61□□□□□ -2.31
TRIM39Q9HCM9 MIR519E-201ENST00000385075 84 ntBASIC0.61□□□□□ -2.31
TRIM39Q9HCM9 U3.27-201ENST00000391237 200 ntBASIC0.61□□□□□ -2.31
TRIM39Q9HCM9 RNU6-402P-201ENST00000410678 103 ntBASIC0.61□□□□□ -2.31
TRIM39Q9HCM9 Y_RNA.620-201ENST00000411009 88 ntBASIC0.61□□□□□ -2.31
TRIM39Q9HCM9 MIR548AG2-201ENST00000581228 64 ntBASIC0.61□□□□□ -2.31
TRIM39Q9HCM9 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.61□□□□□ -2.31
TRIM39Q9HCM9 AC069271.1-201ENST00000445577 156 ntBASIC0.6□□□□□ -2.31
TRIM39Q9HCM9 RNA5SP436-201ENST00000516020 115 ntBASIC0.6□□□□□ -2.31
TRIM39Q9HCM9 uc_338.17-201ENST00000619633 179 ntBASIC0.6□□□□□ -2.31
TRIM39Q9HCM9 Y_RNA.17-201ENST00000362433 111 ntBASIC0.59□□□□□ -2.31
TRIM39Q9HCM9 Y_RNA.43-201ENST00000362670 111 ntBASIC0.59□□□□□ -2.31
TRIM39Q9HCM9 RNU6-848P-201ENST00000515948 107 ntBASIC0.59□□□□□ -2.31
TRIM39Q9HCM9 RNU6-617P-201ENST00000516147 107 ntBASIC0.59□□□□□ -2.31
TRIM39Q9HCM9 RNU6-473P-201ENST00000516164 107 ntBASIC0.59□□□□□ -2.31
TRIM39Q9HCM9 RNU6-1049P-201ENST00000516414 107 ntBASIC0.59□□□□□ -2.31
TRIM39Q9HCM9 SNORA18.5-201ENST00000516616 101 ntBASIC0.59□□□□□ -2.31
TRIM39Q9HCM9 AC006254.2-201ENST00000603259 279 ntBASIC0.59□□□□□ -2.31
TRIM39Q9HCM9 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
TRIM39Q9HCM9 MIR5706-201ENST00000579841 80 ntBASIC0.58□□□□□ -2.32
TRIM39Q9HCM9 U7.6-201ENST00000610841 64 ntBASIC0.58□□□□□ -2.32
TRIM39Q9HCM9 IGLL4P-201ENST00000614590 133 ntBASIC0.58□□□□□ -2.32
TRIM39Q9HCM9 RNA5SP292-201ENST00000390974 118 ntBASIC0.57□□□□□ -2.32
TRIM39Q9HCM9 AC006210.1-201ENST00000424882 111 ntBASIC0.57□□□□□ -2.32
TRIM39Q9HCM9 MIR4460-201ENST00000577862 86 ntBASIC0.57□□□□□ -2.32
TRIM39Q9HCM9 MIR4796-201ENST00000580742 81 ntBASIC0.57□□□□□ -2.32
TRIM39Q9HCM9 PVT1_3.1-201ENST00000620853 95 ntBASIC0.57□□□□□ -2.32
TRIM39Q9HCM9 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.57□□□□□ -2.32
TRIM39Q9HCM9 RNU6-1255P-201ENST00000363434 112 ntBASIC0.56□□□□□ -2.32
TRIM39Q9HCM9 RNU1-141P-201ENST00000364623 158 ntBASIC0.56□□□□□ -2.32
TRIM39Q9HCM9 RNU6-219P-201ENST00000364728 107 ntBASIC0.56□□□□□ -2.32
TRIM39Q9HCM9 SNORA2A-201ENST00000383885 135 ntBASIC0.56□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 231.7 ms