Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 Y_RNA.818-201ENST00000618813 71 ntBASIC0.49□□□□□ -2.33
HIPK3Q9H422 AC025521.1-201ENST00000621624 286 ntBASIC0.49□□□□□ -2.33
HIPK3Q9H422 MIR450A1-201ENST00000362262 91 ntBASIC0.48□□□□□ -2.33
HIPK3Q9H422 RNU6-44P-201ENST00000384045 107 ntBASIC0.48□□□□□ -2.33
HIPK3Q9H422 AC103810.7-201ENST00000607821 91 ntBASIC0.48□□□□□ -2.33
HIPK3Q9H422 SNORD41.1-201ENST00000391000 69 ntBASIC0.47□□□□□ -2.33
HIPK3Q9H422 MIR548L-201ENST00000408303 86 ntBASIC0.47□□□□□ -2.33
HIPK3Q9H422 SNORA68.3-201ENST00000515906 83 ntBASIC0.47□□□□□ -2.33
HIPK3Q9H422 SNORA62.5-201ENST00000516634 120 ntBASIC0.47□□□□□ -2.33
HIPK3Q9H422 AL513043.2-201ENST00000573941 143 ntBASIC0.47□□□□□ -2.33
HIPK3Q9H422 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.47□□□□□ -2.33
HIPK3Q9H422 TRDV1-202ENST00000621643 102 ntBASIC0.47□□□□□ -2.33
HIPK3Q9H422 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
HIPK3Q9H422 Y_RNA.107-201ENST00000363190 121 ntBASIC0.46□□□□□ -2.34
HIPK3Q9H422 AL161932.1-201ENST00000437408 146 ntBASIC0.46□□□□□ -2.34
HIPK3Q9H422 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.46□□□□□ -2.34
HIPK3Q9H422 RNU7-13P-201ENST00000516413 62 ntBASIC0.46□□□□□ -2.34
HIPK3Q9H422 Y_RNA.93-201ENST00000363066 109 ntBASIC0.45□□□□□ -2.34
HIPK3Q9H422 RNU6-957P-201ENST00000363652 99 ntBASIC0.45□□□□□ -2.34
HIPK3Q9H422 RNU6-1126P-201ENST00000384002 107 ntBASIC0.45□□□□□ -2.34
HIPK3Q9H422 SNORA50A-201ENST00000384225 134 ntBASIC0.45□□□□□ -2.34
HIPK3Q9H422 Y_RNA.544-201ENST00000384650 113 ntBASIC0.45□□□□□ -2.34
HIPK3Q9H422 RNU6-644P-201ENST00000391155 98 ntBASIC0.45□□□□□ -2.34
HIPK3Q9H422 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.45□□□□□ -2.34
HIPK3Q9H422 snoU13.11-201ENST00000459219 104 ntBASIC0.45□□□□□ -2.34
HIPK3Q9H422 Y_RNA.705-201ENST00000516862 110 ntBASIC0.45□□□□□ -2.34
HIPK3Q9H422 MIR3920-201ENST00000581751 86 ntBASIC0.45□□□□□ -2.34
HIPK3Q9H422 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.45□□□□□ -2.34
HIPK3Q9H422 Y_RNA.96-201ENST00000363092 109 ntBASIC0.44□□□□□ -2.34
HIPK3Q9H422 SNORD44.1-201ENST00000363202 61 ntBASIC0.44□□□□□ -2.34
HIPK3Q9H422 RNU6-972P-201ENST00000391208 107 ntBASIC0.44□□□□□ -2.34
HIPK3Q9H422 RNU6-466P-201ENST00000391224 103 ntBASIC0.44□□□□□ -2.34
HIPK3Q9H422 AC069271.1-201ENST00000445577 156 ntBASIC0.44□□□□□ -2.34
HIPK3Q9H422 Y_RNA.648-201ENST00000459455 110 ntBASIC0.44□□□□□ -2.34
HIPK3Q9H422 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.44□□□□□ -2.34
HIPK3Q9H422 MIRLET7D-201ENST00000362263 87 ntBASIC0.43□□□□□ -2.34
HIPK3Q9H422 Y_RNA.283-201ENST00000364798 112 ntBASIC0.43□□□□□ -2.34
HIPK3Q9H422 RNU2-59P-201ENST00000410482 191 ntBASIC0.43□□□□□ -2.34
HIPK3Q9H422 RNU6-887P-201ENST00000410660 100 ntBASIC0.43□□□□□ -2.34
HIPK3Q9H422 AL162376.1-201ENST00000624117 175 ntBASIC0.43□□□□□ -2.34
HIPK3Q9H422 SNORD115-44-201ENST00000365391 82 ntBASIC0.42□□□□□ -2.34
HIPK3Q9H422 RNU6-147P-201ENST00000383983 107 ntBASIC0.42□□□□□ -2.34
HIPK3Q9H422 RNU7-61P-201ENST00000515897 61 ntBASIC0.42□□□□□ -2.34
HIPK3Q9H422 AC023932.2-201ENST00000603176 175 ntBASIC0.42□□□□□ -2.34
HIPK3Q9H422 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.42□□□□□ -2.34
HIPK3Q9H422 SNORD58A-201ENST00000383875 65 ntBASIC0.41□□□□□ -2.34
HIPK3Q9H422 RNA5SP63-201ENST00000391225 112 ntBASIC0.41□□□□□ -2.34
HIPK3Q9H422 Y_RNA.596-201ENST00000410462 109 ntBASIC0.41□□□□□ -2.34
HIPK3Q9H422 RNU6-158P-201ENST00000517104 100 ntBASIC0.41□□□□□ -2.34
HIPK3Q9H422 U6.100-201ENST00000636230 99 ntBASIC0.41□□□□□ -2.34
HIPK3Q9H422 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.41□□□□□ -2.34
HIPK3Q9H422 MIR103A1-201ENST00000362165 78 ntBASIC0.4□□□□□ -2.35
HIPK3Q9H422 RNU6-269P-201ENST00000391077 97 ntBASIC0.4□□□□□ -2.35
HIPK3Q9H422 MTATP8P2-201ENST00000435212 202 ntBASIC0.4□□□□□ -2.35
HIPK3Q9H422 RNU6-863P-201ENST00000515989 104 ntBASIC0.4□□□□□ -2.35
HIPK3Q9H422 MTRNR2L2-201ENST00000604882 87 ntBASIC0.4□□□□□ -2.35
HIPK3Q9H422 AP001318.4-201ENST00000616637 121 ntBASIC0.4□□□□□ -2.35
HIPK3Q9H422 RNU6-75P-201ENST00000515944 104 ntBASIC0.39□□□□□ -2.35
HIPK3Q9H422 RNA5SP395-201ENST00000516567 118 ntBASIC0.39□□□□□ -2.35
HIPK3Q9H422 MIR4752-201ENST00000579672 72 ntBASIC0.39□□□□□ -2.35
HIPK3Q9H422 MIR548AG2-201ENST00000581228 64 ntBASIC0.39□□□□□ -2.35
HIPK3Q9H422 RNU6-32P-201ENST00000383948 107 ntBASIC0.38□□□□□ -2.35
HIPK3Q9H422 RNU6-13P-201ENST00000384248 107 ntBASIC0.38□□□□□ -2.35
HIPK3Q9H422 RNU6-12P-201ENST00000384604 107 ntBASIC0.38□□□□□ -2.35
HIPK3Q9H422 RNU6-41P-201ENST00000384741 107 ntBASIC0.38□□□□□ -2.35
HIPK3Q9H422 RNU7-85P-201ENST00000458851 63 ntBASIC0.38□□□□□ -2.35
HIPK3Q9H422 RNU7-74P-201ENST00000459104 62 ntBASIC0.38□□□□□ -2.35
HIPK3Q9H422 RNU6-287P-201ENST00000516230 98 ntBASIC0.38□□□□□ -2.35
HIPK3Q9H422 MIR4536-1-201ENST00000583537 88 ntBASIC0.38□□□□□ -2.35
HIPK3Q9H422 MIR6755-201ENST00000619993 66 ntBASIC0.38□□□□□ -2.35
HIPK3Q9H422 Y_RNA.423-201ENST00000384057 113 ntBASIC0.37□□□□□ -2.35
HIPK3Q9H422 MIR617-201ENST00000385030 97 ntBASIC0.37□□□□□ -2.35
HIPK3Q9H422 RNU6-65P-201ENST00000516332 98 ntBASIC0.37□□□□□ -2.35
HIPK3Q9H422 MIR4696-201ENST00000581431 70 ntBASIC0.37□□□□□ -2.35
HIPK3Q9H422 RNU1-29P-201ENST00000606574 126 ntBASIC0.37□□□□□ -2.35
HIPK3Q9H422 MIR2052-201ENST00000636055 55 ntBASIC0.37□□□□□ -2.35
HIPK3Q9H422 AC090625.1-201ENST00000357130 210 ntBASIC0.36□□□□□ -2.35
HIPK3Q9H422 RNU6-664P-201ENST00000362381 107 ntBASIC0.36□□□□□ -2.35
HIPK3Q9H422 RNU6-509P-201ENST00000363519 107 ntBASIC0.36□□□□□ -2.35
HIPK3Q9H422 SNORD116-10-201ENST00000363791 102 ntBASIC0.36□□□□□ -2.35
HIPK3Q9H422 Y_RNA.207-201ENST00000364142 106 ntBASIC0.36□□□□□ -2.35
HIPK3Q9H422 SNORD101-201ENST00000384027 73 ntBASIC0.36□□□□□ -2.35
HIPK3Q9H422 Y_RNA.495-201ENST00000384435 112 ntBASIC0.36□□□□□ -2.35
HIPK3Q9H422 MIR2113-201ENST00000459007 91 ntBASIC0.36□□□□□ -2.35
HIPK3Q9H422 RNU6-848P-201ENST00000515948 107 ntBASIC0.36□□□□□ -2.35
HIPK3Q9H422 RNU6-617P-201ENST00000516147 107 ntBASIC0.36□□□□□ -2.35
HIPK3Q9H422 RNU6-473P-201ENST00000516164 107 ntBASIC0.36□□□□□ -2.35
HIPK3Q9H422 RNU6-162P-201ENST00000516228 103 ntBASIC0.36□□□□□ -2.35
HIPK3Q9H422 SNORA40.13-201ENST00000516379 120 ntBASIC0.36□□□□□ -2.35
HIPK3Q9H422 RNU6-1049P-201ENST00000516414 107 ntBASIC0.36□□□□□ -2.35
HIPK3Q9H422 U7.3-201ENST00000616123 62 ntBASIC0.36□□□□□ -2.35
HIPK3Q9H422 AC073869.9-201ENST00000641610 120 ntBASIC0.36□□□□□ -2.35
HIPK3Q9H422 MIR519E-201ENST00000385075 84 ntBASIC0.35□□□□□ -2.35
HIPK3Q9H422 SNORD4B-201ENST00000459083 72 ntBASIC0.35□□□□□ -2.35
HIPK3Q9H422 Y_RNA.81-201ENST00000362997 102 ntBASIC0.34□□□□□ -2.36
HIPK3Q9H422 Y_RNA.348-201ENST00000365403 103 ntBASIC0.34□□□□□ -2.36
HIPK3Q9H422 RNU6-519P-201ENST00000410590 108 ntBASIC0.34□□□□□ -2.36
HIPK3Q9H422 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.34□□□□□ -2.36
HIPK3Q9H422 RNU6-153P-201ENST00000364422 104 ntBASIC0.33□□□□□ -2.36
HIPK3Q9H422 SNORA2A-201ENST00000383885 135 ntBASIC0.33□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 329.6 ms