Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 RNU6-215P-201ENST00000365169 102 ntBASIC0.38□□□□□ -2.35
PAAF1Q9BRP4 snoU13.11-201ENST00000459219 104 ntBASIC0.38□□□□□ -2.35
PAAF1Q9BRP4 RNA5SP330-201ENST00000517096 96 ntBASIC0.38□□□□□ -2.35
PAAF1Q9BRP4 AL513043.2-201ENST00000573941 143 ntBASIC0.38□□□□□ -2.35
PAAF1Q9BRP4 MIR3920-201ENST00000581751 86 ntBASIC0.38□□□□□ -2.35
PAAF1Q9BRP4 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.37□□□□□ -2.35
PAAF1Q9BRP4 MIR450A1-201ENST00000362262 91 ntBASIC0.37□□□□□ -2.35
PAAF1Q9BRP4 RNA5SP62-201ENST00000363457 110 ntBASIC0.37□□□□□ -2.35
PAAF1Q9BRP4 RNU6-509P-201ENST00000363519 107 ntBASIC0.37□□□□□ -2.35
PAAF1Q9BRP4 SNORA50A-201ENST00000384225 134 ntBASIC0.37□□□□□ -2.35
PAAF1Q9BRP4 RNU6-269P-201ENST00000391077 97 ntBASIC0.37□□□□□ -2.35
PAAF1Q9BRP4 Y_RNA.596-201ENST00000410462 109 ntBASIC0.37□□□□□ -2.35
PAAF1Q9BRP4 RNU6-109P-201ENST00000516364 107 ntBASIC0.37□□□□□ -2.35
PAAF1Q9BRP4 RNU6-184P-201ENST00000516514 107 ntBASIC0.37□□□□□ -2.35
PAAF1Q9BRP4 MIR4752-201ENST00000579672 72 ntBASIC0.37□□□□□ -2.35
PAAF1Q9BRP4 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.37□□□□□ -2.35
PAAF1Q9BRP4 Y_RNA.818-201ENST00000618813 71 ntBASIC0.37□□□□□ -2.35
PAAF1Q9BRP4 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
PAAF1Q9BRP4 SNORA2A-201ENST00000383885 135 ntBASIC0.36□□□□□ -2.35
PAAF1Q9BRP4 Y_RNA.544-201ENST00000384650 113 ntBASIC0.36□□□□□ -2.35
PAAF1Q9BRP4 RNU6-644P-201ENST00000391155 98 ntBASIC0.36□□□□□ -2.35
PAAF1Q9BRP4 RNU6-972P-201ENST00000391208 107 ntBASIC0.36□□□□□ -2.35
PAAF1Q9BRP4 AL035461.1-201ENST00000421490 332 ntBASIC0.36□□□□□ -2.35
PAAF1Q9BRP4 AC073261.1-201ENST00000429409 121 ntBASIC0.36□□□□□ -2.35
PAAF1Q9BRP4 Y_RNA.648-201ENST00000459455 110 ntBASIC0.36□□□□□ -2.35
PAAF1Q9BRP4 RNU6-65P-201ENST00000516332 98 ntBASIC0.36□□□□□ -2.35
PAAF1Q9BRP4 AL162376.1-201ENST00000624117 175 ntBASIC0.36□□□□□ -2.35
PAAF1Q9BRP4 AC073869.9-201ENST00000641610 120 ntBASIC0.36□□□□□ -2.35
PAAF1Q9BRP4 Y_RNA.283-201ENST00000364798 112 ntBASIC0.35□□□□□ -2.35
PAAF1Q9BRP4 RNU6-887P-201ENST00000410660 100 ntBASIC0.35□□□□□ -2.35
PAAF1Q9BRP4 RNU7-129P-201ENST00000516128 62 ntBASIC0.35□□□□□ -2.35
PAAF1Q9BRP4 MIR4536-1-201ENST00000583537 88 ntBASIC0.35□□□□□ -2.35
PAAF1Q9BRP4 U6.100-201ENST00000636230 99 ntBASIC0.35□□□□□ -2.35
PAAF1Q9BRP4 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.34□□□□□ -2.35
PAAF1Q9BRP4 SNORA63.4-201ENST00000362763 126 ntBASIC0.34□□□□□ -2.36
PAAF1Q9BRP4 Y_RNA.93-201ENST00000363066 109 ntBASIC0.34□□□□□ -2.36
PAAF1Q9BRP4 RNU6-287P-201ENST00000516230 98 ntBASIC0.34□□□□□ -2.36
PAAF1Q9BRP4 RNU6-1057P-201ENST00000517162 102 ntBASIC0.34□□□□□ -2.36
PAAF1Q9BRP4 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.34□□□□□ -2.36
PAAF1Q9BRP4 RNU6-1327P-201ENST00000365302 105 ntBASIC0.33□□□□□ -2.36
PAAF1Q9BRP4 SNORD101-201ENST00000384027 73 ntBASIC0.33□□□□□ -2.36
PAAF1Q9BRP4 MIR760-201ENST00000390220 80 ntBASIC0.33□□□□□ -2.36
PAAF1Q9BRP4 RNU7-61P-201ENST00000515897 61 ntBASIC0.33□□□□□ -2.36
PAAF1Q9BRP4 RNA5SP134-201ENST00000516492 96 ntBASIC0.33□□□□□ -2.36
PAAF1Q9BRP4 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.33□□□□□ -2.36
PAAF1Q9BRP4 MIR4514-201ENST00000581410 57 ntBASIC0.33□□□□□ -2.36
PAAF1Q9BRP4 MIR924-201ENST00000638017 53 ntBASIC0.33□□□□□ -2.36
PAAF1Q9BRP4 MIR330-201ENST00000362196 94 ntBASIC0.32□□□□□ -2.36
PAAF1Q9BRP4 MIR1197-201ENST00000408818 88 ntBASIC0.32□□□□□ -2.36
PAAF1Q9BRP4 AC006210.1-201ENST00000424882 111 ntBASIC0.32□□□□□ -2.36
PAAF1Q9BRP4 RNU6-537P-201ENST00000517277 103 ntBASIC0.32□□□□□ -2.36
PAAF1Q9BRP4 MIR8087-201ENST00000612745 78 ntBASIC0.32□□□□□ -2.36
PAAF1Q9BRP4 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.32□□□□□ -2.36
PAAF1Q9BRP4 MIR6755-201ENST00000619993 66 ntBASIC0.32□□□□□ -2.36
PAAF1Q9BRP4 SNORA9.1-201ENST00000362412 131 ntBASIC0.31□□□□□ -2.36
PAAF1Q9BRP4 RNU6-755P-201ENST00000364400 103 ntBASIC0.31□□□□□ -2.36
PAAF1Q9BRP4 RNU6-44P-201ENST00000384045 107 ntBASIC0.31□□□□□ -2.36
PAAF1Q9BRP4 MIR617-201ENST00000385030 97 ntBASIC0.31□□□□□ -2.36
PAAF1Q9BRP4 RNU6-519P-201ENST00000410590 108 ntBASIC0.31□□□□□ -2.36
PAAF1Q9BRP4 MIR2113-201ENST00000459007 91 ntBASIC0.31□□□□□ -2.36
PAAF1Q9BRP4 RNU6-848P-201ENST00000515948 107 ntBASIC0.31□□□□□ -2.36
PAAF1Q9BRP4 RNU6-617P-201ENST00000516147 107 ntBASIC0.31□□□□□ -2.36
PAAF1Q9BRP4 RNU6-473P-201ENST00000516164 107 ntBASIC0.31□□□□□ -2.36
PAAF1Q9BRP4 RNU6-1049P-201ENST00000516414 107 ntBASIC0.31□□□□□ -2.36
PAAF1Q9BRP4 NAMPTP3-201ENST00000569273 224 ntBASIC0.31□□□□□ -2.36
PAAF1Q9BRP4 U7.6-201ENST00000610841 64 ntBASIC0.31□□□□□ -2.36
PAAF1Q9BRP4 RNU6-664P-201ENST00000362381 107 ntBASIC0.3□□□□□ -2.36
PAAF1Q9BRP4 Y_RNA.115-201ENST00000363272 98 ntBASIC0.3□□□□□ -2.36
PAAF1Q9BRP4 Y_RNA.207-201ENST00000364142 106 ntBASIC0.3□□□□□ -2.36
PAAF1Q9BRP4 Y_RNA.239-201ENST00000364444 113 ntBASIC0.3□□□□□ -2.36
PAAF1Q9BRP4 SNORD58A-201ENST00000383875 65 ntBASIC0.3□□□□□ -2.36
PAAF1Q9BRP4 SNORD110-201ENST00000408189 75 ntBASIC0.3□□□□□ -2.36
PAAF1Q9BRP4 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC0.3□□□□□ -2.36
PAAF1Q9BRP4 RNU6-815P-201ENST00000384080 113 ntBASIC0.29□□□□□ -2.36
PAAF1Q9BRP4 RNA5SP484-201ENST00000458857 111 ntBASIC0.29□□□□□ -2.36
PAAF1Q9BRP4 MIR5706-201ENST00000579841 80 ntBASIC0.29□□□□□ -2.36
PAAF1Q9BRP4 MIR4696-201ENST00000581431 70 ntBASIC0.29□□□□□ -2.36
PAAF1Q9BRP4 SNORA70.25-201ENST00000612741 95 ntBASIC0.29□□□□□ -2.36
PAAF1Q9BRP4 MIR2909-201ENST00000617113 69 ntBASIC0.29□□□□□ -2.36
PAAF1Q9BRP4 MIR2052-201ENST00000636055 55 ntBASIC0.29□□□□□ -2.36
PAAF1Q9BRP4 SNORD116-10-201ENST00000363791 102 ntBASIC0.28□□□□□ -2.36
PAAF1Q9BRP4 MIR519E-201ENST00000385075 84 ntBASIC0.28□□□□□ -2.36
PAAF1Q9BRP4 RNU6-162P-201ENST00000516228 103 ntBASIC0.28□□□□□ -2.36
PAAF1Q9BRP4 AC069113.3-201ENST00000521019 150 ntBASIC0.28□□□□□ -2.36
PAAF1Q9BRP4 MIR548AG2-201ENST00000581228 64 ntBASIC0.28□□□□□ -2.36
PAAF1Q9BRP4 RNA5SP128-201ENST00000365305 116 ntBASIC0.27□□□□□ -2.37
PAAF1Q9BRP4 RNU1-141P-201ENST00000364623 158 ntBASIC0.26□□□□□ -2.37
PAAF1Q9BRP4 RNU6-32P-201ENST00000383948 107 ntBASIC0.26□□□□□ -2.37
PAAF1Q9BRP4 RNU6-13P-201ENST00000384248 107 ntBASIC0.26□□□□□ -2.37
PAAF1Q9BRP4 RNU6-12P-201ENST00000384604 107 ntBASIC0.26□□□□□ -2.37
PAAF1Q9BRP4 RNU6-41P-201ENST00000384741 107 ntBASIC0.26□□□□□ -2.37
PAAF1Q9BRP4 RNU7-85P-201ENST00000458851 63 ntBASIC0.26□□□□□ -2.37
PAAF1Q9BRP4 MIR4460-201ENST00000577862 86 ntBASIC0.26□□□□□ -2.37
PAAF1Q9BRP4 U7.3-201ENST00000616123 62 ntBASIC0.26□□□□□ -2.37
PAAF1Q9BRP4 MIR6718-201ENST00000616153 80 ntBASIC0.26□□□□□ -2.37
PAAF1Q9BRP4 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.26□□□□□ -2.37
PAAF1Q9BRP4 MIR548U-201ENST00000390728 81 ntBASIC0.25□□□□□ -2.37
PAAF1Q9BRP4 RNU6-935P-201ENST00000410371 100 ntBASIC0.25□□□□□ -2.37
PAAF1Q9BRP4 MTATP8P2-201ENST00000435212 202 ntBASIC0.25□□□□□ -2.37
PAAF1Q9BRP4 AC108740.1-201ENST00000498629 225 ntBASIC0.25□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 168.8 ms