Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MIR1276-201ENST00000408707 83 ntBASIC0.95□□□□□ -2.26
CCDC140Q96MF4 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.95□□□□□ -2.26
CCDC140Q96MF4 RNU6-1057P-201ENST00000517162 102 ntBASIC0.95□□□□□ -2.26
CCDC140Q96MF4 MIR4796-201ENST00000580742 81 ntBASIC0.95□□□□□ -2.26
CCDC140Q96MF4 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.95□□□□□ -2.26
CCDC140Q96MF4 AC006160.2-201ENST00000637708 154 ntBASIC0.95□□□□□ -2.26
CCDC140Q96MF4 RNU6-1276P-201ENST00000365372 104 ntBASIC0.94□□□□□ -2.26
CCDC140Q96MF4 SNORD115-44-201ENST00000365391 82 ntBASIC0.94□□□□□ -2.26
CCDC140Q96MF4 Y_RNA.355-201ENST00000365462 98 ntBASIC0.94□□□□□ -2.26
CCDC140Q96MF4 RNU6-979P-201ENST00000383896 107 ntBASIC0.94□□□□□ -2.26
CCDC140Q96MF4 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
CCDC140Q96MF4 RNU6-1052P-201ENST00000411398 104 ntBASIC0.94□□□□□ -2.26
CCDC140Q96MF4 RNU6-719P-201ENST00000516671 104 ntBASIC0.94□□□□□ -2.26
CCDC140Q96MF4 RNA5SP94-201ENST00000516917 108 ntBASIC0.94□□□□□ -2.26
CCDC140Q96MF4 MTRNR2L2-201ENST00000604882 87 ntBASIC0.94□□□□□ -2.26
CCDC140Q96MF4 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.94□□□□□ -2.26
CCDC140Q96MF4 Y_RNA.224-201ENST00000364308 111 ntBASIC0.93□□□□□ -2.26
CCDC140Q96MF4 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.93□□□□□ -2.26
CCDC140Q96MF4 PSMC1P5-201ENST00000512850 177 ntBASIC0.93□□□□□ -2.26
CCDC140Q96MF4 RNA5SP227-201ENST00000516184 113 ntBASIC0.93□□□□□ -2.26
CCDC140Q96MF4 SNORA25.13-201ENST00000516395 103 ntBASIC0.93□□□□□ -2.26
CCDC140Q96MF4 SCARNA16.5-201ENST00000517114 183 ntBASIC0.93□□□□□ -2.26
CCDC140Q96MF4 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
CCDC140Q96MF4 Y_RNA.118-201ENST00000363300 101 ntBASIC0.92□□□□□ -2.26
CCDC140Q96MF4 SNORA36.1-201ENST00000363424 132 ntBASIC0.92□□□□□ -2.26
CCDC140Q96MF4 RNU6-1152P-201ENST00000384576 107 ntBASIC0.92□□□□□ -2.26
CCDC140Q96MF4 MIR2113-201ENST00000459007 91 ntBASIC0.92□□□□□ -2.26
CCDC140Q96MF4 FGF7P7-201ENST00000514120 227 ntBASIC0.92□□□□□ -2.26
CCDC140Q96MF4 RNA5SP268-201ENST00000516828 124 ntBASIC0.92□□□□□ -2.26
CCDC140Q96MF4 MIR4295-201ENST00000585286 85 ntBASIC0.92□□□□□ -2.26
CCDC140Q96MF4 MIR7111-201ENST00000619751 72 ntBASIC0.92□□□□□ -2.26
CCDC140Q96MF4 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.92□□□□□ -2.26
CCDC140Q96MF4 RNU6-726P-201ENST00000364680 107 ntBASIC0.91□□□□□ -2.26
CCDC140Q96MF4 RNA5SP102-201ENST00000516865 106 ntBASIC0.91□□□□□ -2.26
CCDC140Q96MF4 MIR548AG2-201ENST00000581228 64 ntBASIC0.91□□□□□ -2.26
CCDC140Q96MF4 RNU6-1126P-201ENST00000384002 107 ntBASIC0.9□□□□□ -2.27
CCDC140Q96MF4 MIR140-201ENST00000385282 100 ntBASIC0.9□□□□□ -2.27
CCDC140Q96MF4 SNORD90-201ENST00000391145 111 ntBASIC0.9□□□□□ -2.27
CCDC140Q96MF4 RNU6-935P-201ENST00000410371 100 ntBASIC0.9□□□□□ -2.27
CCDC140Q96MF4 MIR4452-201ENST00000583004 71 ntBASIC0.9□□□□□ -2.27
CCDC140Q96MF4 Y_RNA.437-201ENST00000384113 113 ntBASIC0.89□□□□□ -2.27
CCDC140Q96MF4 MIR451A-201ENST00000385059 72 ntBASIC0.89□□□□□ -2.27
CCDC140Q96MF4 MIR1285-1-201ENST00000408593 84 ntBASIC0.88□□□□□ -2.27
CCDC140Q96MF4 RNU7-171P-201ENST00000459581 62 ntBASIC0.88□□□□□ -2.27
CCDC140Q96MF4 MIR3140-201ENST00000583685 90 ntBASIC0.88□□□□□ -2.27
CCDC140Q96MF4 RNU6-1051P-201ENST00000365471 102 ntBASIC0.87□□□□□ -2.27
CCDC140Q96MF4 MIR617-201ENST00000385030 97 ntBASIC0.87□□□□□ -2.27
CCDC140Q96MF4 SNORD41.1-201ENST00000391000 69 ntBASIC0.87□□□□□ -2.27
CCDC140Q96MF4 snoU13.18-201ENST00000459483 104 ntBASIC0.87□□□□□ -2.27
CCDC140Q96MF4 AC140658.3-201ENST00000567603 271 ntBASIC0.87□□□□□ -2.27
CCDC140Q96MF4 AL078603.1-201ENST00000603824 313 ntBASIC0.87□□□□□ -2.27
CCDC140Q96MF4 AC092634.7-201ENST00000621022 103 ntBASIC0.87□□□□□ -2.27
CCDC140Q96MF4 RNA5SP517-201ENST00000364724 117 ntBASIC0.86□□□□□ -2.27
CCDC140Q96MF4 RNU6-652P-201ENST00000365488 107 ntBASIC0.86□□□□□ -2.27
CCDC140Q96MF4 RNU6-42P-201ENST00000384165 107 ntBASIC0.86□□□□□ -2.27
CCDC140Q96MF4 RNU6-110P-201ENST00000384508 104 ntBASIC0.86□□□□□ -2.27
CCDC140Q96MF4 MIR519E-201ENST00000385075 84 ntBASIC0.86□□□□□ -2.27
CCDC140Q96MF4 Y_RNA.607-201ENST00000410597 98 ntBASIC0.86□□□□□ -2.27
CCDC140Q96MF4 RNA5SP220-201ENST00000516298 104 ntBASIC0.86□□□□□ -2.27
CCDC140Q96MF4 MIR1245B-201ENST00000636115 69 ntBASIC0.86□□□□□ -2.27
CCDC140Q96MF4 MIR6828-201ENST00000636181 60 ntBASIC0.86□□□□□ -2.27
CCDC140Q96MF4 SNORD114-22-201ENST00000365423 72 ntBASIC0.85□□□□□ -2.27
CCDC140Q96MF4 RNU6-269P-201ENST00000391077 97 ntBASIC0.85□□□□□ -2.27
CCDC140Q96MF4 AL450471.1-201ENST00000447509 127 ntBASIC0.84□□□□□ -2.27
CCDC140Q96MF4 RNU7-74P-201ENST00000459104 62 ntBASIC0.84□□□□□ -2.27
CCDC140Q96MF4 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.84□□□□□ -2.27
CCDC140Q96MF4 MIR6734-201ENST00000621166 68 ntBASIC0.84□□□□□ -2.27
CCDC140Q96MF4 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.84□□□□□ -2.28
CCDC140Q96MF4 Y_RNA.313-201ENST00000365095 103 ntBASIC0.83□□□□□ -2.28
CCDC140Q96MF4 RNY4P3-201ENST00000365254 95 ntBASIC0.83□□□□□ -2.28
CCDC140Q96MF4 SNORA8.2-201ENST00000384372 139 ntBASIC0.83□□□□□ -2.28
CCDC140Q96MF4 snoU13.17-201ENST00000458802 104 ntBASIC0.83□□□□□ -2.28
CCDC140Q96MF4 RNU6-1108P-201ENST00000516308 104 ntBASIC0.83□□□□□ -2.28
CCDC140Q96MF4 SNORA25.18-201ENST00000607153 114 ntBASIC0.83□□□□□ -2.28
CCDC140Q96MF4 MIR7107-201ENST00000611489 80 ntBASIC0.83□□□□□ -2.28
CCDC140Q96MF4 RNU6-161P-201ENST00000363051 106 ntBASIC0.82□□□□□ -2.28
CCDC140Q96MF4 MIR489-201ENST00000384923 84 ntBASIC0.82□□□□□ -2.28
CCDC140Q96MF4 AC087343.1-201ENST00000477341 475 ntBASIC0.82□□□□□ -2.28
CCDC140Q96MF4 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
CCDC140Q96MF4 MIR96-201ENST00000362288 78 ntBASIC0.81□□□□□ -2.28
CCDC140Q96MF4 SNORA63.2-201ENST00000362603 126 ntBASIC0.81□□□□□ -2.28
CCDC140Q96MF4 RNU6-787P-201ENST00000384032 107 ntBASIC0.81□□□□□ -2.28
CCDC140Q96MF4 RNU6-1124P-201ENST00000384169 107 ntBASIC0.81□□□□□ -2.28
CCDC140Q96MF4 SNORD114-21-201ENST00000606412 72 ntBASIC0.81□□□□□ -2.28
CCDC140Q96MF4 SNORD114-27-201ENST00000363766 70 ntBASIC0.8□□□□□ -2.28
CCDC140Q96MF4 AC069271.1-201ENST00000445577 156 ntBASIC0.8□□□□□ -2.28
CCDC140Q96MF4 MIR4666B-201ENST00000578142 81 ntBASIC0.8□□□□□ -2.28
CCDC140Q96MF4 MIR4752-201ENST00000579672 72 ntBASIC0.8□□□□□ -2.28
CCDC140Q96MF4 AL590095.2-201ENST00000604136 117 ntBASIC0.8□□□□□ -2.28
CCDC140Q96MF4 RNU5F-1-201ENST00000362507 117 ntBASIC0.79□□□□□ -2.28
CCDC140Q96MF4 Y_RNA.219-201ENST00000364232 113 ntBASIC0.79□□□□□ -2.28
CCDC140Q96MF4 RNU1-93P-201ENST00000364704 169 ntBASIC0.79□□□□□ -2.28
CCDC140Q96MF4 Y_RNA.316-201ENST00000365118 111 ntBASIC0.79□□□□□ -2.28
CCDC140Q96MF4 RNU6-129P-201ENST00000391022 107 ntBASIC0.79□□□□□ -2.28
CCDC140Q96MF4 AL162376.1-201ENST00000624117 175 ntBASIC0.79□□□□□ -2.28
CCDC140Q96MF4 RNU6-624P-201ENST00000363411 107 ntBASIC0.78□□□□□ -2.28
CCDC140Q96MF4 RNU4-38P-201ENST00000364472 129 ntBASIC0.78□□□□□ -2.28
CCDC140Q96MF4 MIR520E-201ENST00000384867 87 ntBASIC0.78□□□□□ -2.28
CCDC140Q96MF4 U3.27-201ENST00000391237 200 ntBASIC0.78□□□□□ -2.28
CCDC140Q96MF4 SNORA40.8-201ENST00000411034 126 ntBASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms