Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 MIR1197-201ENST00000408818 88 ntBASIC0.43□□□□□ -2.34
HPS3Q969F9 AL031737.1-201ENST00000450125 223 ntBASIC0.43□□□□□ -2.34
HPS3Q969F9 RNU6-848P-201ENST00000515948 107 ntBASIC0.43□□□□□ -2.34
HPS3Q969F9 RNU6-617P-201ENST00000516147 107 ntBASIC0.43□□□□□ -2.34
HPS3Q969F9 RNU6-473P-201ENST00000516164 107 ntBASIC0.43□□□□□ -2.34
HPS3Q969F9 RNU6-1049P-201ENST00000516414 107 ntBASIC0.43□□□□□ -2.34
HPS3Q969F9 RNU6-919P-201ENST00000516731 104 ntBASIC0.43□□□□□ -2.34
HPS3Q969F9 MIR3920-201ENST00000581751 86 ntBASIC0.43□□□□□ -2.34
HPS3Q969F9 AC012531.4-201ENST00000616509 177 ntBASIC0.43□□□□□ -2.34
HPS3Q969F9 Y_RNA.818-201ENST00000618813 71 ntBASIC0.43□□□□□ -2.34
HPS3Q969F9 RNU6-766P-201ENST00000362478 107 ntBASIC0.42□□□□□ -2.34
HPS3Q969F9 Y_RNA.68-201ENST00000362881 102 ntBASIC0.42□□□□□ -2.34
HPS3Q969F9 RNU6-509P-201ENST00000363519 107 ntBASIC0.42□□□□□ -2.34
HPS3Q969F9 Y_RNA.648-201ENST00000459455 110 ntBASIC0.42□□□□□ -2.34
HPS3Q969F9 Y_RNA.705-201ENST00000516862 110 ntBASIC0.42□□□□□ -2.34
HPS3Q969F9 MIR4777-201ENST00000583710 86 ntBASIC0.42□□□□□ -2.34
HPS3Q969F9 AC103810.7-201ENST00000607821 91 ntBASIC0.42□□□□□ -2.34
HPS3Q969F9 AC025521.1-201ENST00000621624 286 ntBASIC0.42□□□□□ -2.34
HPS3Q969F9 AC073869.9-201ENST00000641610 120 ntBASIC0.42□□□□□ -2.34
HPS3Q969F9 MIR103A1-201ENST00000362165 78 ntBASIC0.41□□□□□ -2.34
HPS3Q969F9 RNU6-957P-201ENST00000363652 99 ntBASIC0.41□□□□□ -2.34
HPS3Q969F9 RNU6-1327P-201ENST00000365302 105 ntBASIC0.41□□□□□ -2.34
HPS3Q969F9 Y_RNA.423-201ENST00000384057 113 ntBASIC0.41□□□□□ -2.34
HPS3Q969F9 SNORD20-201ENST00000384550 80 ntBASIC0.41□□□□□ -2.34
HPS3Q969F9 RNU6-644P-201ENST00000391155 98 ntBASIC0.41□□□□□ -2.34
HPS3Q969F9 RNU6-972P-201ENST00000391208 107 ntBASIC0.41□□□□□ -2.34
HPS3Q969F9 Y_RNA.596-201ENST00000410462 109 ntBASIC0.41□□□□□ -2.34
HPS3Q969F9 AL513043.2-201ENST00000573941 143 ntBASIC0.41□□□□□ -2.34
HPS3Q969F9 RNU6-215P-201ENST00000365169 102 ntBASIC0.4□□□□□ -2.35
HPS3Q969F9 SNORA2A-201ENST00000383885 135 ntBASIC0.4□□□□□ -2.35
HPS3Q969F9 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
HPS3Q969F9 Y_RNA.107-201ENST00000363190 121 ntBASIC0.39□□□□□ -2.35
HPS3Q969F9 Y_RNA.544-201ENST00000384650 113 ntBASIC0.39□□□□□ -2.35
HPS3Q969F9 RNU6-269P-201ENST00000391077 97 ntBASIC0.39□□□□□ -2.35
HPS3Q969F9 AL161932.1-201ENST00000437408 146 ntBASIC0.39□□□□□ -2.35
HPS3Q969F9 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.39□□□□□ -2.35
HPS3Q969F9 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.39□□□□□ -2.35
HPS3Q969F9 Y_RNA.93-201ENST00000363066 109 ntBASIC0.38□□□□□ -2.35
HPS3Q969F9 RNA5SP62-201ENST00000363457 110 ntBASIC0.38□□□□□ -2.35
HPS3Q969F9 Y_RNA.283-201ENST00000364798 112 ntBASIC0.38□□□□□ -2.35
HPS3Q969F9 snoU13.11-201ENST00000459219 104 ntBASIC0.38□□□□□ -2.35
HPS3Q969F9 RNU6-537P-201ENST00000517277 103 ntBASIC0.38□□□□□ -2.35
HPS3Q969F9 MIR548Z-201ENST00000584743 97 ntBASIC0.38□□□□□ -2.35
HPS3Q969F9 MIR617-201ENST00000385030 97 ntBASIC0.37□□□□□ -2.35
HPS3Q969F9 AC073261.1-201ENST00000429409 121 ntBASIC0.37□□□□□ -2.35
HPS3Q969F9 RNU6-65P-201ENST00000516332 98 ntBASIC0.37□□□□□ -2.35
HPS3Q969F9 RNA5SP134-201ENST00000516492 96 ntBASIC0.37□□□□□ -2.35
HPS3Q969F9 AC023932.2-201ENST00000603176 175 ntBASIC0.37□□□□□ -2.35
HPS3Q969F9 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.37□□□□□ -2.35
HPS3Q969F9 RNU6-755P-201ENST00000364400 103 ntBASIC0.36□□□□□ -2.35
HPS3Q969F9 RNU6-887P-201ENST00000410660 100 ntBASIC0.36□□□□□ -2.35
HPS3Q969F9 MIR4752-201ENST00000579672 72 ntBASIC0.36□□□□□ -2.35
HPS3Q969F9 MIR5706-201ENST00000579841 80 ntBASIC0.36□□□□□ -2.35
HPS3Q969F9 MIR4514-201ENST00000581410 57 ntBASIC0.36□□□□□ -2.35
HPS3Q969F9 MIR4536-1-201ENST00000583537 88 ntBASIC0.36□□□□□ -2.35
HPS3Q969F9 U7.6-201ENST00000610841 64 ntBASIC0.36□□□□□ -2.35
HPS3Q969F9 U6.100-201ENST00000636230 99 ntBASIC0.36□□□□□ -2.35
HPS3Q969F9 SNORA9.1-201ENST00000362412 131 ntBASIC0.35□□□□□ -2.35
HPS3Q969F9 Y_RNA.178-201ENST00000363832 102 ntBASIC0.35□□□□□ -2.35
HPS3Q969F9 SNORD101-201ENST00000384027 73 ntBASIC0.35□□□□□ -2.35
HPS3Q969F9 RNA5SP63-201ENST00000391225 112 ntBASIC0.35□□□□□ -2.35
HPS3Q969F9 AL035461.1-201ENST00000421490 332 ntBASIC0.35□□□□□ -2.35
HPS3Q969F9 RNU6-287P-201ENST00000516230 98 ntBASIC0.35□□□□□ -2.35
HPS3Q969F9 RNU6-1057P-201ENST00000517162 102 ntBASIC0.35□□□□□ -2.35
HPS3Q969F9 MIR6755-201ENST00000619993 66 ntBASIC0.35□□□□□ -2.35
HPS3Q969F9 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.34□□□□□ -2.35
HPS3Q969F9 MIR760-201ENST00000390220 80 ntBASIC0.34□□□□□ -2.36
HPS3Q969F9 MIR2113-201ENST00000459007 91 ntBASIC0.34□□□□□ -2.36
HPS3Q969F9 RNU6-109P-201ENST00000516364 107 ntBASIC0.34□□□□□ -2.36
HPS3Q969F9 RNU6-184P-201ENST00000516514 107 ntBASIC0.34□□□□□ -2.36
HPS3Q969F9 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.34□□□□□ -2.36
HPS3Q969F9 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.34□□□□□ -2.36
HPS3Q969F9 MIR2052-201ENST00000636055 55 ntBASIC0.34□□□□□ -2.36
HPS3Q969F9 MIR450A1-201ENST00000362262 91 ntBASIC0.33□□□□□ -2.36
HPS3Q969F9 Y_RNA.433-201ENST00000384089 102 ntBASIC0.33□□□□□ -2.36
HPS3Q969F9 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.33□□□□□ -2.36
HPS3Q969F9 MTRNR2L2-201ENST00000604882 87 ntBASIC0.33□□□□□ -2.36
HPS3Q969F9 RNU6-664P-201ENST00000362381 107 ntBASIC0.32□□□□□ -2.36
HPS3Q969F9 Y_RNA.207-201ENST00000364142 106 ntBASIC0.32□□□□□ -2.36
HPS3Q969F9 SNORD58A-201ENST00000383875 65 ntBASIC0.32□□□□□ -2.36
HPS3Q969F9 AC006210.1-201ENST00000424882 111 ntBASIC0.32□□□□□ -2.36
HPS3Q969F9 AC108740.1-201ENST00000498629 225 ntBASIC0.32□□□□□ -2.36
HPS3Q969F9 AC069113.3-201ENST00000521019 150 ntBASIC0.32□□□□□ -2.36
HPS3Q969F9 Y_RNA.239-201ENST00000364444 113 ntBASIC0.31□□□□□ -2.36
HPS3Q969F9 RNU6-815P-201ENST00000384080 113 ntBASIC0.31□□□□□ -2.36
HPS3Q969F9 MIR519E-201ENST00000385075 84 ntBASIC0.31□□□□□ -2.36
HPS3Q969F9 SNORD110-201ENST00000408189 75 ntBASIC0.31□□□□□ -2.36
HPS3Q969F9 RNU7-61P-201ENST00000515897 61 ntBASIC0.31□□□□□ -2.36
HPS3Q969F9 RNU7-129P-201ENST00000516128 62 ntBASIC0.31□□□□□ -2.36
HPS3Q969F9 NAMPTP3-201ENST00000569273 224 ntBASIC0.31□□□□□ -2.36
HPS3Q969F9 MIR548AG2-201ENST00000581228 64 ntBASIC0.31□□□□□ -2.36
HPS3Q969F9 SNORA63.4-201ENST00000362763 126 ntBASIC0.3□□□□□ -2.36
HPS3Q969F9 SNORD116-10-201ENST00000363791 102 ntBASIC0.3□□□□□ -2.36
HPS3Q969F9 RNA5SP128-201ENST00000365305 116 ntBASIC0.3□□□□□ -2.36
HPS3Q969F9 MIR216B-201ENST00000390186 82 ntBASIC0.3□□□□□ -2.36
HPS3Q969F9 RNU6-519P-201ENST00000410590 108 ntBASIC0.3□□□□□ -2.36
HPS3Q969F9 RNA5SP484-201ENST00000458857 111 ntBASIC0.3□□□□□ -2.36
HPS3Q969F9 RNU6-158P-201ENST00000517104 100 ntBASIC0.3□□□□□ -2.36
HPS3Q969F9 MIR4696-201ENST00000581431 70 ntBASIC0.3□□□□□ -2.36
HPS3Q969F9 SNORA70.25-201ENST00000612741 95 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 166.1 ms