Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MIR760-201ENST00000390220 80 ntBASIC0.3□□□□□ -2.36
CCDC28AQ8IWP9 RNA5SP247-201ENST00000411181 105 ntBASIC0.3□□□□□ -2.36
CCDC28AQ8IWP9 MIR2113-201ENST00000459007 91 ntBASIC0.3□□□□□ -2.36
CCDC28AQ8IWP9 RNU6-287P-201ENST00000516230 98 ntBASIC0.3□□□□□ -2.36
CCDC28AQ8IWP9 RNU6-65P-201ENST00000516332 98 ntBASIC0.3□□□□□ -2.36
CCDC28AQ8IWP9 Y_RNA.676-201ENST00000516393 96 ntBASIC0.3□□□□□ -2.36
CCDC28AQ8IWP9 AC069113.3-201ENST00000521019 150 ntBASIC0.3□□□□□ -2.36
CCDC28AQ8IWP9 MIR548AG2-201ENST00000581228 64 ntBASIC0.3□□□□□ -2.36
CCDC28AQ8IWP9 U7.6-201ENST00000610841 64 ntBASIC0.3□□□□□ -2.36
CCDC28AQ8IWP9 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.3□□□□□ -2.36
CCDC28AQ8IWP9 AC243829.3-201ENST00000622177 108 ntBASIC0.3□□□□□ -2.36
CCDC28AQ8IWP9 SNORD101-201ENST00000384027 73 ntBASIC0.29□□□□□ -2.36
CCDC28AQ8IWP9 RNU6-815P-201ENST00000384080 113 ntBASIC0.29□□□□□ -2.36
CCDC28AQ8IWP9 RNU6-42P-201ENST00000384165 107 ntBASIC0.29□□□□□ -2.36
CCDC28AQ8IWP9 MIR519E-201ENST00000385075 84 ntBASIC0.29□□□□□ -2.36
CCDC28AQ8IWP9 RNU6-109P-201ENST00000516364 107 ntBASIC0.29□□□□□ -2.36
CCDC28AQ8IWP9 RNU6-184P-201ENST00000516514 107 ntBASIC0.29□□□□□ -2.36
CCDC28AQ8IWP9 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.29□□□□□ -2.36
CCDC28AQ8IWP9 MIR6513-201ENST00000621188 64 ntBASIC0.29□□□□□ -2.36
CCDC28AQ8IWP9 MIR450A1-201ENST00000362262 91 ntBASIC0.28□□□□□ -2.36
CCDC28AQ8IWP9 Y_RNA.207-201ENST00000364142 106 ntBASIC0.28□□□□□ -2.36
CCDC28AQ8IWP9 RNA5SP128-201ENST00000365305 116 ntBASIC0.28□□□□□ -2.36
CCDC28AQ8IWP9 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.28□□□□□ -2.36
CCDC28AQ8IWP9 AL035461.1-201ENST00000421490 332 ntBASIC0.28□□□□□ -2.36
CCDC28AQ8IWP9 AC006210.1-201ENST00000424882 111 ntBASIC0.28□□□□□ -2.36
CCDC28AQ8IWP9 MIR4536-1-201ENST00000583537 88 ntBASIC0.28□□□□□ -2.36
CCDC28AQ8IWP9 AC243829.6-201ENST00000612652 106 ntBASIC0.28□□□□□ -2.36
CCDC28AQ8IWP9 SNORA70.25-201ENST00000612741 95 ntBASIC0.28□□□□□ -2.36
CCDC28AQ8IWP9 RNU6-664P-201ENST00000362381 107 ntBASIC0.27□□□□□ -2.37
CCDC28AQ8IWP9 RNA5SP484-201ENST00000458857 111 ntBASIC0.27□□□□□ -2.37
CCDC28AQ8IWP9 RNU7-129P-201ENST00000516128 62 ntBASIC0.27□□□□□ -2.37
CCDC28AQ8IWP9 RNU6-158P-201ENST00000517104 100 ntBASIC0.27□□□□□ -2.37
CCDC28AQ8IWP9 NAMPTP3-201ENST00000569273 224 ntBASIC0.27□□□□□ -2.37
CCDC28AQ8IWP9 MIR4315-1-201ENST00000636800 73 ntBASIC0.27□□□□□ -2.37
CCDC28AQ8IWP9 MIR4315-2-201ENST00000640925 73 ntBASIC0.27□□□□□ -2.37
CCDC28AQ8IWP9 RNU1-141P-201ENST00000364623 158 ntBASIC0.26□□□□□ -2.37
CCDC28AQ8IWP9 SNORD58A-201ENST00000383875 65 ntBASIC0.26□□□□□ -2.37
CCDC28AQ8IWP9 SNORD110-201ENST00000408189 75 ntBASIC0.26□□□□□ -2.37
CCDC28AQ8IWP9 RNU7-61P-201ENST00000515897 61 ntBASIC0.26□□□□□ -2.37
CCDC28AQ8IWP9 RNU6-75P-201ENST00000515944 104 ntBASIC0.26□□□□□ -2.37
CCDC28AQ8IWP9 RNU6-1057P-201ENST00000517162 102 ntBASIC0.26□□□□□ -2.37
CCDC28AQ8IWP9 MIR4696-201ENST00000581431 70 ntBASIC0.26□□□□□ -2.37
CCDC28AQ8IWP9 SNORD116-10-201ENST00000363791 102 ntBASIC0.25□□□□□ -2.37
CCDC28AQ8IWP9 RNU6-519P-201ENST00000410590 108 ntBASIC0.25□□□□□ -2.37
CCDC28AQ8IWP9 RNU7-85P-201ENST00000458851 63 ntBASIC0.25□□□□□ -2.37
CCDC28AQ8IWP9 SNORA63.4-201ENST00000362763 126 ntBASIC0.24□□□□□ -2.37
CCDC28AQ8IWP9 Y_RNA.239-201ENST00000364444 113 ntBASIC0.24□□□□□ -2.37
CCDC28AQ8IWP9 MIR1287-201ENST00000408492 90 ntBASIC0.24□□□□□ -2.37
CCDC28AQ8IWP9 RNU6-935P-201ENST00000410371 100 ntBASIC0.24□□□□□ -2.37
CCDC28AQ8IWP9 MIR2052-201ENST00000636055 55 ntBASIC0.24□□□□□ -2.37
CCDC28AQ8IWP9 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.24□□□□□ -2.37
CCDC28AQ8IWP9 MIR216B-201ENST00000390186 82 ntBASIC0.23□□□□□ -2.37
CCDC28AQ8IWP9 AC093423.1-201ENST00000440817 142 ntBASIC0.23□□□□□ -2.37
CCDC28AQ8IWP9 MIR5093-201ENST00000583199 100 ntBASIC0.23□□□□□ -2.37
CCDC28AQ8IWP9 VTRNA1-3-201ENST00000365645 89 ntBASIC0.22□□□□□ -2.37
CCDC28AQ8IWP9 MIR4460-201ENST00000577862 86 ntBASIC0.22□□□□□ -2.37
CCDC28AQ8IWP9 MIR548U-201ENST00000390728 81 ntBASIC0.21□□□□□ -2.38
CCDC28AQ8IWP9 MIR936-201ENST00000401264 98 ntBASIC0.21□□□□□ -2.38
CCDC28AQ8IWP9 MTATP8P2-201ENST00000435212 202 ntBASIC0.21□□□□□ -2.38
CCDC28AQ8IWP9 SNORD4B-201ENST00000459083 72 ntBASIC0.21□□□□□ -2.38
CCDC28AQ8IWP9 RNU6-1232P-201ENST00000516299 86 ntBASIC0.21□□□□□ -2.38
CCDC28AQ8IWP9 AC069503.3-201ENST00000618674 145 ntBASIC0.21□□□□□ -2.38
CCDC28AQ8IWP9 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC0.21□□□□□ -2.38
CCDC28AQ8IWP9 RNU6-44P-201ENST00000384045 107 ntBASIC0.2□□□□□ -2.38
CCDC28AQ8IWP9 MIR501-201ENST00000390204 84 ntBASIC0.2□□□□□ -2.38
CCDC28AQ8IWP9 MIR4711-201ENST00000578274 70 ntBASIC0.2□□□□□ -2.38
CCDC28AQ8IWP9 U7.3-201ENST00000616123 62 ntBASIC0.2□□□□□ -2.38
CCDC28AQ8IWP9 Y_RNA.226-201ENST00000364337 114 ntBASIC0.19□□□□□ -2.38
CCDC28AQ8IWP9 RNU6-32P-201ENST00000383948 107 ntBASIC0.19□□□□□ -2.38
CCDC28AQ8IWP9 RNU6-13P-201ENST00000384248 107 ntBASIC0.19□□□□□ -2.38
CCDC28AQ8IWP9 RNU6-12P-201ENST00000384604 107 ntBASIC0.19□□□□□ -2.38
CCDC28AQ8IWP9 RNU6-41P-201ENST00000384741 107 ntBASIC0.19□□□□□ -2.38
CCDC28AQ8IWP9 MIR518E-201ENST00000385252 88 ntBASIC0.19□□□□□ -2.38
CCDC28AQ8IWP9 RNU6-127P-201ENST00000390897 107 ntBASIC0.19□□□□□ -2.38
CCDC28AQ8IWP9 SNORA40.13-201ENST00000516379 120 ntBASIC0.19□□□□□ -2.38
CCDC28AQ8IWP9 MIR548AD-201ENST00000584780 82 ntBASIC0.19□□□□□ -2.38
CCDC28AQ8IWP9 AP001318.4-201ENST00000616637 121 ntBASIC0.19□□□□□ -2.38
CCDC28AQ8IWP9 MIR499B-201ENST00000636498 73 ntBASIC0.19□□□□□ -2.38
CCDC28AQ8IWP9 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.19□□□□□ -2.38
CCDC28AQ8IWP9 MIRLET7F1-201ENST00000362202 87 ntBASIC0.18□□□□□ -2.38
CCDC28AQ8IWP9 Y_RNA.125-201ENST00000363371 111 ntBASIC0.18□□□□□ -2.38
CCDC28AQ8IWP9 RNU6-147P-201ENST00000383983 107 ntBASIC0.18□□□□□ -2.38
CCDC28AQ8IWP9 SNORA42.1-201ENST00000363515 137 ntBASIC0.17□□□□□ -2.38
CCDC28AQ8IWP9 MIR451A-201ENST00000385059 72 ntBASIC0.17□□□□□ -2.38
CCDC28AQ8IWP9 MT-TY-201ENST00000387409 66 ntBASIC0.17□□□□□ -2.38
CCDC28AQ8IWP9 HMGN2P22-201ENST00000427588 175 ntBASIC0.17□□□□□ -2.38
CCDC28AQ8IWP9 RNU6-162P-201ENST00000516228 103 ntBASIC0.17□□□□□ -2.38
CCDC28AQ8IWP9 Y_RNA.677-201ENST00000516401 85 ntBASIC0.17□□□□□ -2.38
CCDC28AQ8IWP9 RNU6-652P-201ENST00000365488 107 ntBASIC0.16□□□□□ -2.38
CCDC28AQ8IWP9 RNU6-811P-201ENST00000384069 107 ntBASIC0.16□□□□□ -2.38
CCDC28AQ8IWP9 SNORA25.13-201ENST00000516395 103 ntBASIC0.16□□□□□ -2.38
CCDC28AQ8IWP9 RNU6-782P-201ENST00000516852 104 ntBASIC0.16□□□□□ -2.38
CCDC28AQ8IWP9 YWHAEP2-201ENST00000580066 112 ntBASIC0.16□□□□□ -2.38
CCDC28AQ8IWP9 MIR3064-201ENST00000581130 66 ntBASIC0.16□□□□□ -2.38
CCDC28AQ8IWP9 MIR4677-201ENST00000584153 80 ntBASIC0.16□□□□□ -2.38
CCDC28AQ8IWP9 AC104996.3-201ENST00000590718 94 ntBASIC0.16□□□□□ -2.38
CCDC28AQ8IWP9 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.16□□□□□ -2.38
CCDC28AQ8IWP9 MIR6515-201ENST00000619843 57 ntBASIC0.16□□□□□ -2.38
CCDC28AQ8IWP9 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.16□□□□□ -2.38
CCDC28AQ8IWP9 RNU6-132P-201ENST00000383863 107 ntBASIC0.15□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 171.9 ms