Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC005520.4-201ENST00000604337 90 ntBASIC-1.85□□□□□ -2.7
USF3Q68DE3 AL050303.3-201ENST00000613704 284 ntBASIC-1.85□□□□□ -2.7
USF3Q68DE3 RNU6-259P-201ENST00000383999 107 ntBASIC-1.85□□□□□ -2.71
USF3Q68DE3 RNU6-803P-201ENST00000516034 102 ntBASIC-1.85□□□□□ -2.71
USF3Q68DE3 Y_RNA.693-201ENST00000516641 110 ntBASIC-1.85□□□□□ -2.71
USF3Q68DE3 MIR3657-201ENST00000584818 117 ntBASIC-1.85□□□□□ -2.71
USF3Q68DE3 RNU6-937P-201ENST00000384325 106 ntBASIC-1.86□□□□□ -2.71
USF3Q68DE3 RNU6-1177P-201ENST00000391058 104 ntBASIC-1.86□□□□□ -2.71
USF3Q68DE3 RNU6-908P-201ENST00000410160 94 ntBASIC-1.86□□□□□ -2.71
USF3Q68DE3 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-1.86□□□□□ -2.71
USF3Q68DE3 AL138825.1-201ENST00000618587 192 ntBASIC-1.86□□□□□ -2.71
USF3Q68DE3 SNORD116-6-201ENST00000384711 96 ntBASIC-1.86□□□□□ -2.71
USF3Q68DE3 RNU6-120P-201ENST00000516077 103 ntBASIC-1.86□□□□□ -2.71
USF3Q68DE3 SNORD38.1-201ENST00000363863 68 ntBASIC-1.87□□□□□ -2.71
USF3Q68DE3 Y_RNA.286-201ENST00000364813 102 ntBASIC-1.87□□□□□ -2.71
USF3Q68DE3 RNU6-65P-201ENST00000516332 98 ntBASIC-1.87□□□□□ -2.71
USF3Q68DE3 MIR4272-201ENST00000635924 64 ntBASIC-1.87□□□□□ -2.71
USF3Q68DE3 MIR203A-201ENST00000384836 110 ntBASIC-1.87□□□□□ -2.71
USF3Q68DE3 MIR548U-201ENST00000390728 81 ntBASIC-1.87□□□□□ -2.71
USF3Q68DE3 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC-1.87□□□□□ -2.71
USF3Q68DE3 RNA5SP147-201ENST00000516493 109 ntBASIC-1.87□□□□□ -2.71
USF3Q68DE3 RNU6-103P-201ENST00000363686 107 ntBASIC-1.88□□□□□ -2.71
USF3Q68DE3 Y_RNA.217-201ENST00000364214 105 ntBASIC-1.88□□□□□ -2.71
USF3Q68DE3 Y_RNA.419-201ENST00000384041 102 ntBASIC-1.88□□□□□ -2.71
USF3Q68DE3 Y_RNA.639-201ENST00000458981 102 ntBASIC-1.88□□□□□ -2.71
USF3Q68DE3 Y_RNA.641-201ENST00000459414 105 ntBASIC-1.88□□□□□ -2.71
USF3Q68DE3 RNU6-240P-201ENST00000516098 97 ntBASIC-1.88□□□□□ -2.71
USF3Q68DE3 SNORD58B-201ENST00000607313 66 ntBASIC-1.88□□□□□ -2.71
USF3Q68DE3 U6.106-201ENST00000636360 105 ntBASIC-1.88□□□□□ -2.71
USF3Q68DE3 Y_RNA.402-201ENST00000383972 102 ntBASIC-1.89□□□□□ -2.71
USF3Q68DE3 RNU6-246P-201ENST00000384702 107 ntBASIC-1.89□□□□□ -2.71
USF3Q68DE3 SNORA40.4-201ENST00000390971 128 ntBASIC-1.89□□□□□ -2.71
USF3Q68DE3 MTATP6P29-201ENST00000415057 132 ntBASIC-1.89□□□□□ -2.71
USF3Q68DE3 RNU6-561P-201ENST00000516222 102 ntBASIC-1.89□□□□□ -2.71
USF3Q68DE3 RNU4ATAC7P-201ENST00000516280 125 ntBASIC-1.89□□□□□ -2.71
USF3Q68DE3 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC-1.89□□□□□ -2.71
USF3Q68DE3 MTND5P26-201ENST00000426018 1752 ntBASIC-1.89□□□□□ -2.71
USF3Q68DE3 RNU6-230P-201ENST00000362457 104 ntBASIC-1.89□□□□□ -2.71
USF3Q68DE3 Y_RNA.602-201ENST00000410535 92 ntBASIC-1.89□□□□□ -2.71
USF3Q68DE3 RNU2-38P-201ENST00000410856 79 ntBASIC-1.89□□□□□ -2.71
USF3Q68DE3 AC096644.2-201ENST00000429278 159 ntBASIC-1.89□□□□□ -2.71
USF3Q68DE3 RNU7-164P-201ENST00000459221 62 ntBASIC-1.89□□□□□ -2.71
USF3Q68DE3 Y_RNA.695-201ENST00000516715 107 ntBASIC-1.89□□□□□ -2.71
USF3Q68DE3 SNORA20.3-201ENST00000516880 132 ntBASIC-1.89□□□□□ -2.71
USF3Q68DE3 SCARNA24.2-201ENST00000516968 130 ntBASIC-1.89□□□□□ -2.71
USF3Q68DE3 MIR23C-201ENST00000579846 100 ntBASIC-1.89□□□□□ -2.71
USF3Q68DE3 hsa-mir-4773-1.1-201ENST00000585225 78 ntBASIC-1.89□□□□□ -2.71
USF3Q68DE3 RNU6-1313P-201ENST00000362622 102 ntBASIC-1.9□□□□□ -2.71
USF3Q68DE3 Y_RNA.44-201ENST00000362676 108 ntBASIC-1.9□□□□□ -2.71
USF3Q68DE3 RNY4P20-201ENST00000516678 93 ntBASIC-1.9□□□□□ -2.71
USF3Q68DE3 Y_RNA.721-201ENST00000517207 102 ntBASIC-1.9□□□□□ -2.71
USF3Q68DE3 MIR6509-201ENST00000614603 85 ntBASIC-1.9□□□□□ -2.71
USF3Q68DE3 Y_RNA.646-201ENST00000410980 101 ntBASIC-1.9□□□□□ -2.71
USF3Q68DE3 RNU6-1148P-201ENST00000410992 104 ntBASIC-1.9□□□□□ -2.71
USF3Q68DE3 RNU6-651P-201ENST00000411040 105 ntBASIC-1.9□□□□□ -2.71
USF3Q68DE3 AL445567.1-201ENST00000439121 144 ntBASIC-1.9□□□□□ -2.71
USF3Q68DE3 RNU6-1046P-201ENST00000516538 107 ntBASIC-1.9□□□□□ -2.71
USF3Q68DE3 RNU6-521P-201ENST00000516663 105 ntBASIC-1.9□□□□□ -2.71
USF3Q68DE3 Y_RNA.64-201ENST00000362845 102 ntBASIC-1.91□□□□□ -2.71
USF3Q68DE3 Y_RNA.144-201ENST00000363521 113 ntBASIC-1.91□□□□□ -2.71
USF3Q68DE3 Y_RNA.313-201ENST00000365095 103 ntBASIC-1.91□□□□□ -2.71
USF3Q68DE3 Y_RNA.397-201ENST00000383950 98 ntBASIC-1.91□□□□□ -2.71
USF3Q68DE3 MIR521-2-201ENST00000384818 87 ntBASIC-1.91□□□□□ -2.71
USF3Q68DE3 Y_RNA.581-201ENST00000391017 97 ntBASIC-1.91□□□□□ -2.71
USF3Q68DE3 MTATP6P21-201ENST00000440681 189 ntBASIC-1.91□□□□□ -2.71
USF3Q68DE3 SNORD116-25-201ENST00000516517 92 ntBASIC-1.91□□□□□ -2.71
USF3Q68DE3 AC015540.1-201ENST00000615828 501 ntBASIC-1.91□□□□□ -2.71
USF3Q68DE3 snoU18.1-201ENST00000629629 71 ntBASIC-1.91□□□□□ -2.71
USF3Q68DE3 AL512310.12-203ENST00000640543 90 ntBASIC-1.91□□□□□ -2.71
USF3Q68DE3 RBMX2P4-201ENST00000441256 376 ntBASIC-1.91□□□□□ -2.72
USF3Q68DE3 AL021921.1-201ENST00000442774 93 ntBASIC-1.91□□□□□ -2.72
USF3Q68DE3 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC-1.91□□□□□ -2.72
USF3Q68DE3 RNU6-1018P-201ENST00000516577 106 ntBASIC-1.91□□□□□ -2.72
USF3Q68DE3 RNU6-1234P-201ENST00000516877 103 ntBASIC-1.91□□□□□ -2.72
USF3Q68DE3 RNU6-832P-201ENST00000363319 107 ntBASIC-1.92□□□□□ -2.72
USF3Q68DE3 RNU6-694P-201ENST00000364071 147 ntBASIC-1.92□□□□□ -2.72
USF3Q68DE3 RNU6-696P-201ENST00000390834 107 ntBASIC-1.92□□□□□ -2.72
USF3Q68DE3 snoU13.17-201ENST00000458802 104 ntBASIC-1.92□□□□□ -2.72
USF3Q68DE3 Y_RNA.647-201ENST00000459194 112 ntBASIC-1.92□□□□□ -2.72
USF3Q68DE3 Y_RNA.640-201ENST00000459296 112 ntBASIC-1.92□□□□□ -2.72
USF3Q68DE3 AC097484.2-201ENST00000509147 251 ntBASIC-1.92□□□□□ -2.72
USF3Q68DE3 RNU6-62P-201ENST00000516526 102 ntBASIC-1.92□□□□□ -2.72
USF3Q68DE3 Y_RNA.803-201ENST00000614432 112 ntBASIC-1.92□□□□□ -2.72
USF3Q68DE3 Y_RNA.815-201ENST00000616655 112 ntBASIC-1.92□□□□□ -2.72
USF3Q68DE3 Y_RNA.795-201ENST00000619475 112 ntBASIC-1.92□□□□□ -2.72
USF3Q68DE3 Y_RNA.827-201ENST00000638104 112 ntBASIC-1.92□□□□□ -2.72
USF3Q68DE3 RNU6-483P-201ENST00000384088 108 ntBASIC-1.93□□□□□ -2.72
USF3Q68DE3 Y_RNA.582-201ENST00000391023 95 ntBASIC-1.93□□□□□ -2.72
USF3Q68DE3 MIR548G-201ENST00000408442 89 ntBASIC-1.93□□□□□ -2.72
USF3Q68DE3 AC109635.3-201ENST00000529536 185 ntBASIC-1.93□□□□□ -2.72
USF3Q68DE3 Y_RNA.59-201ENST00000362828 102 ntBASIC-1.93□□□□□ -2.72
USF3Q68DE3 RNU6-890P-201ENST00000384121 107 ntBASIC-1.93□□□□□ -2.72
USF3Q68DE3 Y_RNA.511-201ENST00000384514 103 ntBASIC-1.93□□□□□ -2.72
USF3Q68DE3 RNU6-1152P-201ENST00000384576 107 ntBASIC-1.93□□□□□ -2.72
USF3Q68DE3 RNU6-1174P-201ENST00000517278 101 ntBASIC-1.93□□□□□ -2.72
USF3Q68DE3 ST7-OT3_1.1-201ENST00000619607 74 ntBASIC-1.93□□□□□ -2.72
USF3Q68DE3 AL606534.2-204ENST00000635008 178 ntBASIC-1.93□□□□□ -2.72
USF3Q68DE3 RNU6-987P-201ENST00000384759 104 ntBASIC-1.94□□□□□ -2.72
USF3Q68DE3 SNORA40.14-201ENST00000516543 86 ntBASIC-1.94□□□□□ -2.72
USF3Q68DE3 MIR3140-201ENST00000583685 90 ntBASIC-1.94□□□□□ -2.72
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms