Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC244669.1-204ENST00000621564 178 ntBASIC1.19□□□□□ -2.22
RNF4P78317 RNU6-208P-201ENST00000362431 107 ntBASIC1.18□□□□□ -2.22
RNF4P78317 RNU5F-1-201ENST00000362507 117 ntBASIC1.18□□□□□ -2.22
RNF4P78317 RNU6-1229P-201ENST00000364295 107 ntBASIC1.18□□□□□ -2.22
RNF4P78317 MIR2113-201ENST00000459007 91 ntBASIC1.18□□□□□ -2.22
RNF4P78317 RNU6-557P-201ENST00000516842 110 ntBASIC1.18□□□□□ -2.22
RNF4P78317 RNU6-1057P-201ENST00000517162 102 ntBASIC1.18□□□□□ -2.22
RNF4P78317 MIR3678-201ENST00000578455 94 ntBASIC1.18□□□□□ -2.22
RNF4P78317 SNORD18A-201ENST00000363753 72 ntBASIC1.17□□□□□ -2.22
RNF4P78317 RNU6-686P-201ENST00000364839 107 ntBASIC1.17□□□□□ -2.22
RNF4P78317 SNORA25.9-201ENST00000365087 128 ntBASIC1.17□□□□□ -2.22
RNF4P78317 Y_RNA.327-201ENST00000365201 102 ntBASIC1.17□□□□□ -2.22
RNF4P78317 SNORD115-44-201ENST00000365391 82 ntBASIC1.17□□□□□ -2.22
RNF4P78317 snoU13.17-201ENST00000458802 104 ntBASIC1.17□□□□□ -2.22
RNF4P78317 RNU6-1053P-201ENST00000515930 101 ntBASIC1.17□□□□□ -2.22
RNF4P78317 AC068338.1-201ENST00000565567 176 ntBASIC1.17□□□□□ -2.22
RNF4P78317 MIR548AG2-201ENST00000581228 64 ntBASIC1.17□□□□□ -2.22
RNF4P78317 MIR3920-201ENST00000581751 86 ntBASIC1.17□□□□□ -2.22
RNF4P78317 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.17□□□□□ -2.22
RNF4P78317 MIRLET7A1-201ENST00000362295 80 ntBASIC1.16□□□□□ -2.22
RNF4P78317 RNU6-1126P-201ENST00000384002 107 ntBASIC1.16□□□□□ -2.22
RNF4P78317 SNORD28-201ENST00000384706 75 ntBASIC1.16□□□□□ -2.22
RNF4P78317 MIR889-201ENST00000401280 79 ntBASIC1.16□□□□□ -2.22
RNF4P78317 RNU6-321P-201ENST00000410912 106 ntBASIC1.16□□□□□ -2.22
RNF4P78317 RNU6-135P-201ENST00000516769 101 ntBASIC1.16□□□□□ -2.22
RNF4P78317 MIR4639-201ENST00000584938 69 ntBASIC1.16□□□□□ -2.22
RNF4P78317 AC067863.3-201ENST00000624172 122 ntBASIC1.16□□□□□ -2.22
RNF4P78317 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
RNF4P78317 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
RNF4P78317 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.15□□□□□ -2.23
RNF4P78317 AC244098.3-201ENST00000424803 96 ntBASIC1.15□□□□□ -2.23
RNF4P78317 TRMT112P2-201ENST00000512910 132 ntBASIC1.15□□□□□ -2.23
RNF4P78317 Y_RNA.660-201ENST00000516002 120 ntBASIC1.15□□□□□ -2.23
RNF4P78317 RNY4P3-201ENST00000365254 95 ntBASIC1.14□□□□□ -2.23
RNF4P78317 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
RNF4P78317 MIR548L-201ENST00000408303 86 ntBASIC1.14□□□□□ -2.23
RNF4P78317 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.14□□□□□ -2.23
RNF4P78317 MIR6078-201ENST00000611069 100 ntBASIC1.14□□□□□ -2.23
RNF4P78317 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.14□□□□□ -2.23
RNF4P78317 RNU6-1094P-201ENST00000362416 104 ntBASIC1.13□□□□□ -2.23
RNF4P78317 RNU6-716P-201ENST00000365621 103 ntBASIC1.13□□□□□ -2.23
RNF4P78317 OR2A41P-201ENST00000473586 105 ntBASIC1.13□□□□□ -2.23
RNF4P78317 MIR18A-201ENST00000362310 71 ntBASIC1.12□□□□□ -2.23
RNF4P78317 RNU6-392P-201ENST00000364926 101 ntBASIC1.12□□□□□ -2.23
RNF4P78317 Y_RNA.532-201ENST00000384590 113 ntBASIC1.12□□□□□ -2.23
RNF4P78317 RNA5SP47-201ENST00000517230 109 ntBASIC1.12□□□□□ -2.23
RNF4P78317 MIR4484-201ENST00000582855 83 ntBASIC1.12□□□□□ -2.23
RNF4P78317 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.12□□□□□ -2.23
RNF4P78317 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.12□□□□□ -2.23
RNF4P78317 RNA5SP222-201ENST00000411039 105 ntBASIC1.11□□□□□ -2.23
RNF4P78317 Y_RNA.12-201ENST00000362393 112 ntBASIC1.1□□□□□ -2.23
RNF4P78317 Y_RNA.264-201ENST00000364665 102 ntBASIC1.1□□□□□ -2.23
RNF4P78317 RNU6-380P-201ENST00000410207 107 ntBASIC1.1□□□□□ -2.23
RNF4P78317 Y_RNA.788-201ENST00000622394 112 ntBASIC1.1□□□□□ -2.23
RNF4P78317 Y_RNA.371-201ENST00000365591 113 ntBASIC1.09□□□□□ -2.23
RNF4P78317 SNORA24B-201ENST00000384176 131 ntBASIC1.09□□□□□ -2.23
RNF4P78317 MIR617-201ENST00000385030 97 ntBASIC1.09□□□□□ -2.23
RNF4P78317 MIR519E-201ENST00000385075 84 ntBASIC1.09□□□□□ -2.23
RNF4P78317 SCARNA16.5-201ENST00000517114 183 ntBASIC1.09□□□□□ -2.23
RNF4P78317 AL353765.1-201ENST00000605514 183 ntBASIC1.09□□□□□ -2.23
RNF4P78317 RNY1P8-201ENST00000383970 114 ntBASIC1.08□□□□□ -2.24
RNF4P78317 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
RNF4P78317 SCARNA18B-201ENST00000458806 135 ntBASIC1.08□□□□□ -2.24
RNF4P78317 MIR337-201ENST00000362281 93 ntBASIC1.07□□□□□ -2.24
RNF4P78317 RNU6-776P-201ENST00000364403 104 ntBASIC1.07□□□□□ -2.24
RNF4P78317 RNU6-726P-201ENST00000364680 107 ntBASIC1.07□□□□□ -2.24
RNF4P78317 RNU6-1022P-201ENST00000365049 104 ntBASIC1.07□□□□□ -2.24
RNF4P78317 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.07□□□□□ -2.24
RNF4P78317 AC145423.2-201ENST00000610631 239 ntBASIC1.07□□□□□ -2.24
RNF4P78317 MIR4662A-201ENST00000637499 67 ntBASIC1.07□□□□□ -2.24
RNF4P78317 SNORD41.1-201ENST00000391000 69 ntBASIC1.06□□□□□ -2.24
RNF4P78317 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.06□□□□□ -2.24
RNF4P78317 YWHAEP2-201ENST00000580066 112 ntBASIC1.06□□□□□ -2.24
RNF4P78317 YWHAEP3-201ENST00000582767 121 ntBASIC1.06□□□□□ -2.24
RNF4P78317 RNU6-824P-201ENST00000363724 104 ntBASIC1.05□□□□□ -2.24
RNF4P78317 U3.27-201ENST00000391237 200 ntBASIC1.05□□□□□ -2.24
RNF4P78317 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.05□□□□□ -2.24
RNF4P78317 RNU6-303P-201ENST00000517091 106 ntBASIC1.05□□□□□ -2.24
RNF4P78317 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.05□□□□□ -2.24
RNF4P78317 MIR4661-201ENST00000582720 75 ntBASIC1.05□□□□□ -2.24
RNF4P78317 SNORA36.1-201ENST00000363424 132 ntBASIC1.04□□□□□ -2.24
RNF4P78317 Y_RNA.164-201ENST00000363709 102 ntBASIC1.04□□□□□ -2.24
RNF4P78317 SNORA36.2-201ENST00000384004 127 ntBASIC1.04□□□□□ -2.24
RNF4P78317 RNU6-1177P-201ENST00000391058 104 ntBASIC1.04□□□□□ -2.24
RNF4P78317 AC097510.1-201ENST00000510945 133 ntBASIC1.04□□□□□ -2.24
RNF4P78317 RNA5SP227-201ENST00000516184 113 ntBASIC1.04□□□□□ -2.24
RNF4P78317 RNU6-807P-201ENST00000516805 107 ntBASIC1.04□□□□□ -2.24
RNF4P78317 RNA5SP94-201ENST00000516917 108 ntBASIC1.04□□□□□ -2.24
RNF4P78317 MIR4295-201ENST00000585286 85 ntBASIC1.04□□□□□ -2.24
RNF4P78317 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.04□□□□□ -2.24
RNF4P78317 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.04□□□□□ -2.24
RNF4P78317 Y_RNA.258-201ENST00000364613 105 ntBASIC1.03□□□□□ -2.24
RNF4P78317 MIR1285-1-201ENST00000408593 84 ntBASIC1.03□□□□□ -2.24
RNF4P78317 U7.4-201ENST00000614961 63 ntBASIC1.03□□□□□ -2.24
RNF4P78317 RNU6-340P-201ENST00000364005 107 ntBASIC1.02□□□□□ -2.25
RNF4P78317 RNU4-45P-201ENST00000365469 141 ntBASIC1.02□□□□□ -2.25
RNF4P78317 RNU6-1296P-201ENST00000383879 107 ntBASIC1.02□□□□□ -2.25
RNF4P78317 RNU6-269P-201ENST00000391077 97 ntBASIC1.02□□□□□ -2.25
RNF4P78317 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.02□□□□□ -2.25
RNF4P78317 RNU7-74P-201ENST00000459104 62 ntBASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 230.8 ms