Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MIR548O2-201ENST00000616090 70 ntBASIC-0.67□□□□□ -2.52
FOXA1P55317 RNU6-664P-201ENST00000362381 107 ntBASIC-0.68□□□□□ -2.52
FOXA1P55317 RNU6-363P-201ENST00000362895 105 ntBASIC-0.68□□□□□ -2.52
FOXA1P55317 Y_RNA.307-201ENST00000365022 117 ntBASIC-0.68□□□□□ -2.52
FOXA1P55317 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.68□□□□□ -2.52
FOXA1P55317 MIR548D2-201ENST00000384955 97 ntBASIC-0.68□□□□□ -2.52
FOXA1P55317 MIR216B-201ENST00000390186 82 ntBASIC-0.68□□□□□ -2.52
FOXA1P55317 RNU6-466P-201ENST00000391224 103 ntBASIC-0.68□□□□□ -2.52
FOXA1P55317 MIR1263-201ENST00000408324 86 ntBASIC-0.68□□□□□ -2.52
FOXA1P55317 AL353813.1-201ENST00000440700 253 ntBASIC-0.68□□□□□ -2.52
FOXA1P55317 RNU7-197P-201ENST00000458836 62 ntBASIC-0.68□□□□□ -2.52
FOXA1P55317 Y_RNA.644-201ENST00000459006 113 ntBASIC-0.68□□□□□ -2.52
FOXA1P55317 Y_RNA.674-201ENST00000516362 113 ntBASIC-0.68□□□□□ -2.52
FOXA1P55317 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.68□□□□□ -2.52
FOXA1P55317 MIR4280-201ENST00000582178 76 ntBASIC-0.68□□□□□ -2.52
FOXA1P55317 AC145423.2-201ENST00000610631 239 ntBASIC-0.68□□□□□ -2.52
FOXA1P55317 SNORD115-25-201ENST00000362619 82 ntBASIC-0.69□□□□□ -2.52
FOXA1P55317 Y_RNA.114-201ENST00000363265 113 ntBASIC-0.69□□□□□ -2.52
FOXA1P55317 Y_RNA.240-201ENST00000364469 95 ntBASIC-0.69□□□□□ -2.52
FOXA1P55317 AL118496.2-201ENST00000448300 230 ntBASIC-0.69□□□□□ -2.52
FOXA1P55317 snoU13.13-201ENST00000458842 104 ntBASIC-0.69□□□□□ -2.52
FOXA1P55317 RNU6-1018P-201ENST00000516577 106 ntBASIC-0.69□□□□□ -2.52
FOXA1P55317 RNU6-235P-201ENST00000362644 107 ntBASIC-0.7□□□□□ -2.52
FOXA1P55317 Y_RNA.601-201ENST00000410500 113 ntBASIC-0.7□□□□□ -2.52
FOXA1P55317 RNA5SP136-201ENST00000410906 107 ntBASIC-0.7□□□□□ -2.52
FOXA1P55317 RNU6-1135P-201ENST00000411083 103 ntBASIC-0.7□□□□□ -2.52
FOXA1P55317 RNU7-55P-201ENST00000459426 62 ntBASIC-0.7□□□□□ -2.52
FOXA1P55317 AC021146.6-201ENST00000514659 117 ntBASIC-0.7□□□□□ -2.52
FOXA1P55317 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-0.7□□□□□ -2.52
FOXA1P55317 AP002392.1-201ENST00000537692 208 ntBASIC-0.7□□□□□ -2.52
FOXA1P55317 Y_RNA.272-201ENST00000364696 102 ntBASIC-0.71□□□□□ -2.52
FOXA1P55317 Y_RNA.283-201ENST00000364798 112 ntBASIC-0.71□□□□□ -2.52
FOXA1P55317 RNU6-409P-201ENST00000384114 104 ntBASIC-0.71□□□□□ -2.52
FOXA1P55317 Y_RNA.441-201ENST00000384123 112 ntBASIC-0.71□□□□□ -2.52
FOXA1P55317 RNA5SP266-201ENST00000410273 108 ntBASIC-0.71□□□□□ -2.52
FOXA1P55317 RNU6-935P-201ENST00000410371 100 ntBASIC-0.71□□□□□ -2.52
FOXA1P55317 RNU6-1234P-201ENST00000516877 103 ntBASIC-0.71□□□□□ -2.52
FOXA1P55317 MIR3681-201ENST00000580089 72 ntBASIC-0.71□□□□□ -2.52
FOXA1P55317 Y_RNA.155-201ENST00000363632 101 ntBASIC-0.72□□□□□ -2.52
FOXA1P55317 RNU6-151P-201ENST00000364158 107 ntBASIC-0.72□□□□□ -2.52
FOXA1P55317 RNU6-647P-201ENST00000364243 107 ntBASIC-0.72□□□□□ -2.52
FOXA1P55317 Y_RNA.297-201ENST00000364950 91 ntBASIC-0.72□□□□□ -2.52
FOXA1P55317 SNORD38.3-201ENST00000516599 73 ntBASIC-0.72□□□□□ -2.52
FOXA1P55317 RNU6-762P-201ENST00000517107 102 ntBASIC-0.72□□□□□ -2.52
FOXA1P55317 SNORA40.17-201ENST00000517256 115 ntBASIC-0.72□□□□□ -2.52
FOXA1P55317 MIR6851-201ENST00000617060 67 ntBASIC-0.72□□□□□ -2.52
FOXA1P55317 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.73□□□□□ -2.53
FOXA1P55317 Y_RNA.344-201ENST00000365381 112 ntBASIC-0.73□□□□□ -2.53
FOXA1P55317 RNU6-54P-201ENST00000365563 107 ntBASIC-0.73□□□□□ -2.53
FOXA1P55317 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.73□□□□□ -2.53
FOXA1P55317 Y_RNA.507-201ENST00000384500 99 ntBASIC-0.73□□□□□ -2.53
FOXA1P55317 Y_RNA.528-201ENST00000384575 108 ntBASIC-0.73□□□□□ -2.53
FOXA1P55317 RNU6-327P-201ENST00000516270 127 ntBASIC-0.73□□□□□ -2.53
FOXA1P55317 RNU6-861P-201ENST00000516745 106 ntBASIC-0.73□□□□□ -2.53
FOXA1P55317 RNU6-86P-201ENST00000606534 107 ntBASIC-0.73□□□□□ -2.53
FOXA1P55317 AL442128.1-201ENST00000615151 90 ntBASIC-0.73□□□□□ -2.53
FOXA1P55317 MIR582-201ENST00000365731 98 ntBASIC-0.74□□□□□ -2.53
FOXA1P55317 MIR451A-201ENST00000385059 72 ntBASIC-0.74□□□□□ -2.53
FOXA1P55317 MIR548E-201ENST00000408287 88 ntBASIC-0.74□□□□□ -2.53
FOXA1P55317 SNORD2-201ENST00000459163 69 ntBASIC-0.74□□□□□ -2.53
FOXA1P55317 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.74□□□□□ -2.53
FOXA1P55317 Y_RNA.662-201ENST00000516028 97 ntBASIC-0.74□□□□□ -2.53
FOXA1P55317 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.74□□□□□ -2.53
FOXA1P55317 SNORA81.3-201ENST00000517283 198 ntBASIC-0.74□□□□□ -2.53
FOXA1P55317 Y_RNA.778-201ENST00000620203 90 ntBASIC-0.74□□□□□ -2.53
FOXA1P55317 RNU6-1125P-201ENST00000363601 107 ntBASIC-0.75□□□□□ -2.53
FOXA1P55317 Y_RNA.193-201ENST00000363979 102 ntBASIC-0.75□□□□□ -2.53
FOXA1P55317 MIR513C-201ENST00000401352 84 ntBASIC-0.75□□□□□ -2.53
FOXA1P55317 AC097510.1-201ENST00000510945 133 ntBASIC-0.75□□□□□ -2.53
FOXA1P55317 AP001328.1-201ENST00000528550 176 ntBASIC-0.75□□□□□ -2.53
FOXA1P55317 MIR4503-201ENST00000582187 83 ntBASIC-0.75□□□□□ -2.53
FOXA1P55317 RNU6-682P-201ENST00000363843 106 ntBASIC-0.76□□□□□ -2.53
FOXA1P55317 Y_RNA.457-201ENST00000384237 111 ntBASIC-0.76□□□□□ -2.53
FOXA1P55317 RNU6-781P-201ENST00000516377 101 ntBASIC-0.76□□□□□ -2.53
FOXA1P55317 RNY1P9-201ENST00000532431 109 ntBASIC-0.76□□□□□ -2.53
FOXA1P55317 AP001340.1-201ENST00000624405 217 ntBASIC-0.76□□□□□ -2.53
FOXA1P55317 RNY4P6-201ENST00000363667 96 ntBASIC-0.77□□□□□ -2.53
FOXA1P55317 SNORD114-4-201ENST00000363962 75 ntBASIC-0.77□□□□□ -2.53
FOXA1P55317 RNU6-973P-201ENST00000364690 107 ntBASIC-0.77□□□□□ -2.53
FOXA1P55317 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.77□□□□□ -2.53
FOXA1P55317 RNU6-816P-201ENST00000390914 107 ntBASIC-0.77□□□□□ -2.53
FOXA1P55317 RNU6-1268P-201ENST00000391214 107 ntBASIC-0.77□□□□□ -2.53
FOXA1P55317 U3.27-201ENST00000391237 200 ntBASIC-0.77□□□□□ -2.53
FOXA1P55317 RNU6-1239P-201ENST00000391310 107 ntBASIC-0.77□□□□□ -2.53
FOXA1P55317 SNORA13-201ENST00000458790 133 ntBASIC-0.77□□□□□ -2.53
FOXA1P55317 RNU7-120P-201ENST00000459334 63 ntBASIC-0.77□□□□□ -2.53
FOXA1P55317 RNU6-75P-201ENST00000515944 104 ntBASIC-0.77□□□□□ -2.53
FOXA1P55317 RNU6-1130P-201ENST00000365434 107 ntBASIC-0.78□□□□□ -2.53
FOXA1P55317 Y_RNA.452-201ENST00000384202 108 ntBASIC-0.78□□□□□ -2.53
FOXA1P55317 RNU6-196P-201ENST00000384315 107 ntBASIC-0.78□□□□□ -2.53
FOXA1P55317 RNU6-476P-201ENST00000384726 107 ntBASIC-0.78□□□□□ -2.53
FOXA1P55317 AL158147.1-201ENST00000443970 75 ntBASIC-0.78□□□□□ -2.53
FOXA1P55317 SNORD42B-201ENST00000458893 67 ntBASIC-0.78□□□□□ -2.53
FOXA1P55317 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.78□□□□□ -2.53
FOXA1P55317 RNU6-502P-201ENST00000362419 108 ntBASIC-0.79□□□□□ -2.54
FOXA1P55317 Y_RNA.220-201ENST00000364244 109 ntBASIC-0.79□□□□□ -2.54
FOXA1P55317 RNU6-574P-201ENST00000384265 107 ntBASIC-0.79□□□□□ -2.54
FOXA1P55317 Y_RNA.488-201ENST00000384403 102 ntBASIC-0.79□□□□□ -2.54
FOXA1P55317 RNU6-1011P-201ENST00000384668 107 ntBASIC-0.79□□□□□ -2.54
FOXA1P55317 MIR518B-201ENST00000385127 83 ntBASIC-0.79□□□□□ -2.54
Retrieved 100 of 98,524 protein–RNA pairs in 177.7 ms