Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNU6-652P-201ENST00000365488 107 ntBASIC1.18□□□□□ -2.22
LIG3P49916 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.18□□□□□ -2.22
LIG3P49916 Y_RNA.685-201ENST00000516532 108 ntBASIC1.18□□□□□ -2.22
LIG3P49916 RNU6-1057P-201ENST00000517162 102 ntBASIC1.18□□□□□ -2.22
LIG3P49916 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.18□□□□□ -2.22
LIG3P49916 AC067863.3-201ENST00000624172 122 ntBASIC1.18□□□□□ -2.22
LIG3P49916 Y_RNA.207-201ENST00000364142 106 ntBASIC1.17□□□□□ -2.22
LIG3P49916 AL353765.1-201ENST00000605514 183 ntBASIC1.17□□□□□ -2.22
LIG3P49916 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.16□□□□□ -2.22
LIG3P49916 MIR18A-201ENST00000362310 71 ntBASIC1.16□□□□□ -2.22
LIG3P49916 RNY4P3-201ENST00000365254 95 ntBASIC1.16□□□□□ -2.22
LIG3P49916 OR2A41P-201ENST00000473586 105 ntBASIC1.16□□□□□ -2.22
LIG3P49916 FGF7P7-201ENST00000514120 227 ntBASIC1.16□□□□□ -2.22
LIG3P49916 RNU6-287P-201ENST00000516230 98 ntBASIC1.16□□□□□ -2.22
LIG3P49916 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.16□□□□□ -2.22
LIG3P49916 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.16□□□□□ -2.22
LIG3P49916 Y_RNA.313-201ENST00000365095 103 ntBASIC1.15□□□□□ -2.23
LIG3P49916 RNU6-1275P-201ENST00000391087 107 ntBASIC1.15□□□□□ -2.23
LIG3P49916 MIR548L-201ENST00000408303 86 ntBASIC1.15□□□□□ -2.23
LIG3P49916 MIR1255A-201ENST00000408338 113 ntBASIC1.15□□□□□ -2.23
LIG3P49916 RNA5SP47-201ENST00000517230 109 ntBASIC1.15□□□□□ -2.23
LIG3P49916 MIR3920-201ENST00000581751 86 ntBASIC1.15□□□□□ -2.23
LIG3P49916 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.15□□□□□ -2.23
LIG3P49916 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.15□□□□□ -2.23
LIG3P49916 RNU5F-1-201ENST00000362507 117 ntBASIC1.14□□□□□ -2.23
LIG3P49916 RNU6-624P-201ENST00000363411 107 ntBASIC1.14□□□□□ -2.23
LIG3P49916 RNU6-1051P-201ENST00000365471 102 ntBASIC1.14□□□□□ -2.23
LIG3P49916 MIR451A-201ENST00000385059 72 ntBASIC1.14□□□□□ -2.23
LIG3P49916 RNU6-129P-201ENST00000391022 107 ntBASIC1.14□□□□□ -2.23
LIG3P49916 Y_RNA.224-201ENST00000364308 111 ntBASIC1.13□□□□□ -2.23
LIG3P49916 RNU6-1126P-201ENST00000384002 107 ntBASIC1.13□□□□□ -2.23
LIG3P49916 RNA5SP222-201ENST00000411039 105 ntBASIC1.13□□□□□ -2.23
LIG3P49916 MIR2113-201ENST00000459007 91 ntBASIC1.13□□□□□ -2.23
LIG3P49916 SCARNA16.5-201ENST00000517114 183 ntBASIC1.13□□□□□ -2.23
LIG3P49916 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC1.13□□□□□ -2.23
LIG3P49916 MIR6504-201ENST00000613520 61 ntBASIC1.13□□□□□ -2.23
LIG3P49916 SNORA63.2-201ENST00000362603 126 ntBASIC1.12□□□□□ -2.23
LIG3P49916 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC1.12□□□□□ -2.23
LIG3P49916 Y_RNA.660-201ENST00000516002 120 ntBASIC1.12□□□□□ -2.23
LIG3P49916 MIR4295-201ENST00000585286 85 ntBASIC1.12□□□□□ -2.23
LIG3P49916 MIR1276-201ENST00000408707 83 ntBASIC1.11□□□□□ -2.23
LIG3P49916 RNU7-74P-201ENST00000459104 62 ntBASIC1.11□□□□□ -2.23
LIG3P49916 RNU6-557P-201ENST00000516842 110 ntBASIC1.11□□□□□ -2.23
LIG3P49916 RNA5SP102-201ENST00000516865 106 ntBASIC1.11□□□□□ -2.23
LIG3P49916 AC103810.9-201ENST00000606688 112 ntBASIC1.11□□□□□ -2.23
LIG3P49916 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.11□□□□□ -2.23
LIG3P49916 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
LIG3P49916 RNU6-315P-201ENST00000362666 107 ntBASIC1.1□□□□□ -2.23
LIG3P49916 Y_RNA.118-201ENST00000363300 101 ntBASIC1.1□□□□□ -2.23
LIG3P49916 RNA5SP225-201ENST00000410874 135 ntBASIC1.1□□□□□ -2.23
LIG3P49916 AL450471.1-201ENST00000447509 127 ntBASIC1.1□□□□□ -2.23
LIG3P49916 AC087343.1-201ENST00000477341 475 ntBASIC1.1□□□□□ -2.23
LIG3P49916 RNU6-1187P-201ENST00000364771 110 ntBASIC1.09□□□□□ -2.23
LIG3P49916 MIR617-201ENST00000385030 97 ntBASIC1.09□□□□□ -2.23
LIG3P49916 SNORD41.1-201ENST00000391000 69 ntBASIC1.09□□□□□ -2.23
LIG3P49916 SNORD77.2-201ENST00000391045 68 ntBASIC1.09□□□□□ -2.23
LIG3P49916 SNORD90-201ENST00000391145 111 ntBASIC1.09□□□□□ -2.23
LIG3P49916 RNU6-279P-201ENST00000391297 101 ntBASIC1.09□□□□□ -2.23
LIG3P49916 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.09□□□□□ -2.23
LIG3P49916 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.09□□□□□ -2.23
LIG3P49916 MIR548AG2-201ENST00000581228 64 ntBASIC1.09□□□□□ -2.23
LIG3P49916 MIR4712-201ENST00000583750 82 ntBASIC1.09□□□□□ -2.23
LIG3P49916 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.08□□□□□ -2.24
LIG3P49916 RNU6-161P-201ENST00000363051 106 ntBASIC1.08□□□□□ -2.24
LIG3P49916 MIR216B-201ENST00000390186 82 ntBASIC1.08□□□□□ -2.24
LIG3P49916 U3.27-201ENST00000391237 200 ntBASIC1.08□□□□□ -2.24
LIG3P49916 RNU6-1108P-201ENST00000516308 104 ntBASIC1.08□□□□□ -2.24
LIG3P49916 RNU6-208P-201ENST00000362431 107 ntBASIC1.07□□□□□ -2.24
LIG3P49916 SNORD114-27-201ENST00000363766 70 ntBASIC1.07□□□□□ -2.24
LIG3P49916 RNU6-478P-201ENST00000363904 110 ntBASIC1.07□□□□□ -2.24
LIG3P49916 Y_RNA.264-201ENST00000364665 102 ntBASIC1.07□□□□□ -2.24
LIG3P49916 RNU6-726P-201ENST00000364680 107 ntBASIC1.07□□□□□ -2.24
LIG3P49916 Y_RNA.355-201ENST00000365462 98 ntBASIC1.07□□□□□ -2.24
LIG3P49916 RNU6-716P-201ENST00000365621 103 ntBASIC1.07□□□□□ -2.24
LIG3P49916 MIR608-201ENST00000384820 100 ntBASIC1.07□□□□□ -2.24
LIG3P49916 RNU6-380P-201ENST00000410207 107 ntBASIC1.07□□□□□ -2.24
LIG3P49916 MIR3140-201ENST00000583685 90 ntBASIC1.07□□□□□ -2.24
LIG3P49916 RNU6-686P-201ENST00000364839 107 ntBASIC1.06□□□□□ -2.24
LIG3P49916 RNA5SP227-201ENST00000516184 113 ntBASIC1.06□□□□□ -2.24
LIG3P49916 RNA5SP94-201ENST00000516917 108 ntBASIC1.06□□□□□ -2.24
LIG3P49916 MIR4452-201ENST00000583004 71 ntBASIC1.06□□□□□ -2.24
LIG3P49916 MIR7111-201ENST00000619751 72 ntBASIC1.06□□□□□ -2.24
LIG3P49916 MIR6828-201ENST00000636181 60 ntBASIC1.06□□□□□ -2.24
LIG3P49916 MIR96-201ENST00000362288 78 ntBASIC1.05□□□□□ -2.24
LIG3P49916 SNORA36.2-201ENST00000384004 127 ntBASIC1.05□□□□□ -2.24
LIG3P49916 MIR519E-201ENST00000385075 84 ntBASIC1.05□□□□□ -2.24
LIG3P49916 snoU13.18-201ENST00000459483 104 ntBASIC1.05□□□□□ -2.24
LIG3P49916 RNU6-857P-201ENST00000515893 110 ntBASIC1.05□□□□□ -2.24
LIG3P49916 SNORD114-21-201ENST00000606412 72 ntBASIC1.05□□□□□ -2.24
LIG3P49916 Y_RNA.94-201ENST00000363068 106 ntBASIC1.04□□□□□ -2.24
LIG3P49916 RNU6-1052P-201ENST00000411398 104 ntBASIC1.04□□□□□ -2.24
LIG3P49916 RNA5SP395-201ENST00000516567 118 ntBASIC1.04□□□□□ -2.24
LIG3P49916 RNU6-638P-201ENST00000516582 104 ntBASIC1.04□□□□□ -2.24
LIG3P49916 RNU6-719P-201ENST00000516671 104 ntBASIC1.04□□□□□ -2.24
LIG3P49916 AL078603.1-201ENST00000603824 313 ntBASIC1.04□□□□□ -2.24
LIG3P49916 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
LIG3P49916 ACA64.5-201ENST00000516207 127 ntBASIC1.03□□□□□ -2.24
LIG3P49916 RNA5SP268-201ENST00000516828 124 ntBASIC1.03□□□□□ -2.24
LIG3P49916 RNU6-1094P-201ENST00000362416 104 ntBASIC1.02□□□□□ -2.25
LIG3P49916 RNU6-24P-201ENST00000384440 107 ntBASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 231.3 ms