Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 MIR4743-201ENST00000584576 69 ntBASIC0□□□□□ -2.41
MSH2P43246 MIR4768-201ENST00000585270 74 ntBASIC0□□□□□ -2.41
MSH2P43246 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.01□□□□□ -2.41
MSH2P43246 RNU6-466P-201ENST00000391224 103 ntBASIC-0.01□□□□□ -2.41
MSH2P43246 AC093423.1-201ENST00000440817 142 ntBASIC-0.01□□□□□ -2.41
MSH2P43246 MIR4667-201ENST00000578933 66 ntBASIC-0.01□□□□□ -2.41
MSH2P43246 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.01□□□□□ -2.41
MSH2P43246 RNU6-86P-201ENST00000606534 107 ntBASIC-0.01□□□□□ -2.41
MSH2P43246 SNORD114-5-201ENST00000362928 70 ntBASIC-0.02□□□□□ -2.41
MSH2P43246 SNORA51.5-201ENST00000384126 131 ntBASIC-0.02□□□□□ -2.41
MSH2P43246 SNORD116-21-201ENST00000384507 92 ntBASIC-0.02□□□□□ -2.41
MSH2P43246 MIR593-201ENST00000384856 100 ntBASIC-0.02□□□□□ -2.41
MSH2P43246 MIR145-201ENST00000384967 88 ntBASIC-0.02□□□□□ -2.41
MSH2P43246 MIR4439-201ENST00000583746 80 ntBASIC-0.02□□□□□ -2.41
MSH2P43246 RNU6-161P-201ENST00000363051 106 ntBASIC-0.03□□□□□ -2.41
MSH2P43246 Y_RNA.207-201ENST00000364142 106 ntBASIC-0.03□□□□□ -2.41
MSH2P43246 SNORD45B-201ENST00000364617 72 ntBASIC-0.03□□□□□ -2.41
MSH2P43246 MIR7-2-201ENST00000384970 110 ntBASIC-0.03□□□□□ -2.41
MSH2P43246 snoU13.11-201ENST00000459219 104 ntBASIC-0.03□□□□□ -2.41
MSH2P43246 RNU6-412P-201ENST00000516434 106 ntBASIC-0.03□□□□□ -2.41
MSH2P43246 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-0.03□□□□□ -2.41
MSH2P43246 MIR3925-201ENST00000584674 77 ntBASIC-0.03□□□□□ -2.41
MSH2P43246 SNORD114-16-201ENST00000363044 70 ntBASIC-0.04□□□□□ -2.42
MSH2P43246 Y_RNA.283-201ENST00000364798 112 ntBASIC-0.04□□□□□ -2.42
MSH2P43246 RNU6-1014P-201ENST00000383940 103 ntBASIC-0.04□□□□□ -2.42
MSH2P43246 SNORA25.13-201ENST00000516395 103 ntBASIC-0.04□□□□□ -2.42
MSH2P43246 MIR4290-201ENST00000583807 95 ntBASIC-0.04□□□□□ -2.42
MSH2P43246 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-0.04□□□□□ -2.42
MSH2P43246 AL365222.1-201ENST00000614661 98 ntBASIC-0.04□□□□□ -2.42
MSH2P43246 AC069503.3-201ENST00000618674 145 ntBASIC-0.04□□□□□ -2.42
MSH2P43246 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-0.04□□□□□ -2.42
MSH2P43246 RNU6-1107P-201ENST00000364817 104 ntBASIC-0.05□□□□□ -2.42
MSH2P43246 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.05□□□□□ -2.42
MSH2P43246 AC025521.1-201ENST00000621624 286 ntBASIC-0.05□□□□□ -2.42
MSH2P43246 Y_RNA.10-201ENST00000362371 110 ntBASIC-0.06□□□□□ -2.42
MSH2P43246 Y_RNA.95-201ENST00000363079 95 ntBASIC-0.06□□□□□ -2.42
MSH2P43246 Y_RNA.115-201ENST00000363272 98 ntBASIC-0.06□□□□□ -2.42
MSH2P43246 SNORD101-201ENST00000384027 73 ntBASIC-0.06□□□□□ -2.42
MSH2P43246 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.06□□□□□ -2.42
MSH2P43246 MIR4460-201ENST00000577862 86 ntBASIC-0.06□□□□□ -2.42
MSH2P43246 MIR5190-201ENST00000581537 80 ntBASIC-0.06□□□□□ -2.42
MSH2P43246 RNA5SP457-201ENST00000363657 124 ntBASIC-0.07□□□□□ -2.42
MSH2P43246 RNU4-36P-201ENST00000364294 144 ntBASIC-0.07□□□□□ -2.42
MSH2P43246 SNORA75.1-201ENST00000391130 148 ntBASIC-0.07□□□□□ -2.42
MSH2P43246 MIR4696-201ENST00000581431 70 ntBASIC-0.07□□□□□ -2.42
MSH2P43246 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.07□□□□□ -2.42
MSH2P43246 MIR371B-201ENST00000638082 66 ntBASIC-0.07□□□□□ -2.42
MSH2P43246 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.08□□□□□ -2.42
MSH2P43246 RNU6-664P-201ENST00000362381 107 ntBASIC-0.08□□□□□ -2.42
MSH2P43246 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.08□□□□□ -2.42
MSH2P43246 Y_RNA.601-201ENST00000410500 113 ntBASIC-0.08□□□□□ -2.42
MSH2P43246 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-0.08□□□□□ -2.42
MSH2P43246 YWHAEP2-201ENST00000580066 112 ntBASIC-0.08□□□□□ -2.42
MSH2P43246 AC084368.1-201ENST00000620935 65 ntBASIC-0.08□□□□□ -2.42
MSH2P43246 RNU6-813P-201ENST00000384691 107 ntBASIC-0.09□□□□□ -2.42
MSH2P43246 RNU6-476P-201ENST00000384726 107 ntBASIC-0.09□□□□□ -2.42
MSH2P43246 MIR516B1-201ENST00000385211 90 ntBASIC-0.09□□□□□ -2.42
MSH2P43246 MT-TY-201ENST00000387409 66 ntBASIC-0.09□□□□□ -2.42
MSH2P43246 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.09□□□□□ -2.42
MSH2P43246 MIR876-201ENST00000401147 81 ntBASIC-0.09□□□□□ -2.42
MSH2P43246 AL513043.2-201ENST00000573941 143 ntBASIC-0.09□□□□□ -2.42
MSH2P43246 MIR4473-201ENST00000583731 91 ntBASIC-0.09□□□□□ -2.42
MSH2P43246 RNU6-1117P-201ENST00000384525 104 ntBASIC-0.1□□□□□ -2.43
MSH2P43246 RNA5SP163-201ENST00000410304 99 ntBASIC-0.1□□□□□ -2.43
MSH2P43246 RNU6-1064P-201ENST00000410626 104 ntBASIC-0.1□□□□□ -2.43
MSH2P43246 RNU7-165P-201ENST00000458864 60 ntBASIC-0.1□□□□□ -2.43
MSH2P43246 RNU7-159P-201ENST00000459284 62 ntBASIC-0.1□□□□□ -2.43
MSH2P43246 RNU6-75P-201ENST00000515944 104 ntBASIC-0.1□□□□□ -2.43
MSH2P43246 MIR3910-1-201ENST00000580936 111 ntBASIC-0.1□□□□□ -2.43
MSH2P43246 AL109933.3-201ENST00000619095 188 ntBASIC-0.1□□□□□ -2.43
MSH2P43246 RNA5SP205-201ENST00000364653 136 ntBASIC-0.11□□□□□ -2.43
MSH2P43246 Y_RNA.467-201ENST00000384297 102 ntBASIC-0.11□□□□□ -2.43
MSH2P43246 RNU6-22P-201ENST00000384355 107 ntBASIC-0.11□□□□□ -2.43
MSH2P43246 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.11□□□□□ -2.43
MSH2P43246 RNU6-62P-201ENST00000516526 102 ntBASIC-0.11□□□□□ -2.43
MSH2P43246 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.11□□□□□ -2.43
MSH2P43246 MIR4777-201ENST00000583710 86 ntBASIC-0.11□□□□□ -2.43
MSH2P43246 AC103810.7-201ENST00000607821 91 ntBASIC-0.11□□□□□ -2.43
MSH2P43246 RNU6-1168P-201ENST00000390831 104 ntBASIC-0.12□□□□□ -2.43
MSH2P43246 RNU6-935P-201ENST00000410371 100 ntBASIC-0.12□□□□□ -2.43
MSH2P43246 RNU6-180P-201ENST00000516697 61 ntBASIC-0.12□□□□□ -2.43
MSH2P43246 MIR2909-201ENST00000617113 69 ntBASIC-0.12□□□□□ -2.43
MSH2P43246 uc_338.10-201ENST00000621872 182 ntBASIC-0.12□□□□□ -2.43
MSH2P43246 AC132825.6-201ENST00000638861 357 ntBASIC-0.12□□□□□ -2.43
MSH2P43246 RNU6-756P-201ENST00000383997 107 ntBASIC-0.13□□□□□ -2.43
MSH2P43246 RNU6-929P-201ENST00000384429 107 ntBASIC-0.13□□□□□ -2.43
MSH2P43246 MIR216B-201ENST00000390186 82 ntBASIC-0.13□□□□□ -2.43
MSH2P43246 RNU6-644P-201ENST00000391155 98 ntBASIC-0.13□□□□□ -2.43
MSH2P43246 RNU6-904P-201ENST00000516206 101 ntBASIC-0.13□□□□□ -2.43
MSH2P43246 RNU6-795P-201ENST00000516323 103 ntBASIC-0.13□□□□□ -2.43
MSH2P43246 RNU6-65P-201ENST00000516332 98 ntBASIC-0.13□□□□□ -2.43
MSH2P43246 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.13□□□□□ -2.43
MSH2P43246 MIR4536-1-201ENST00000583537 88 ntBASIC-0.13□□□□□ -2.43
MSH2P43246 MIR548Z-201ENST00000584743 97 ntBASIC-0.13□□□□□ -2.43
MSH2P43246 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.13□□□□□ -2.43
MSH2P43246 AC012531.4-201ENST00000616509 177 ntBASIC-0.13□□□□□ -2.43
MSH2P43246 SNORA19.1-201ENST00000410656 129 ntBASIC-0.14□□□□□ -2.43
MSH2P43246 RNU7-85P-201ENST00000458851 63 ntBASIC-0.14□□□□□ -2.43
MSH2P43246 MIR6514-201ENST00000622549 70 ntBASIC-0.14□□□□□ -2.43
MSH2P43246 RNU6-834P-201ENST00000362367 110 ntBASIC-0.15□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 152.1 ms