Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RNU7-61P-201ENST00000515897 61 ntBASIC0.32□□□□□ -2.36
HNF4AP41235 RNU1-29P-201ENST00000606574 126 ntBASIC0.32□□□□□ -2.36
HNF4AP41235 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.32□□□□□ -2.36
HNF4AP41235 MIR6755-201ENST00000619993 66 ntBASIC0.32□□□□□ -2.36
HNF4AP41235 Y_RNA.107-201ENST00000363190 121 ntBASIC0.31□□□□□ -2.36
HNF4AP41235 RNU6-1327P-201ENST00000365302 105 ntBASIC0.31□□□□□ -2.36
HNF4AP41235 SNORD58A-201ENST00000383875 65 ntBASIC0.31□□□□□ -2.36
HNF4AP41235 MIR598-201ENST00000384868 97 ntBASIC0.31□□□□□ -2.36
HNF4AP41235 RNU7-85P-201ENST00000458851 63 ntBASIC0.31□□□□□ -2.36
HNF4AP41235 RNU6-75P-201ENST00000515944 104 ntBASIC0.31□□□□□ -2.36
HNF4AP41235 Y_RNA.705-201ENST00000516862 110 ntBASIC0.31□□□□□ -2.36
HNF4AP41235 Y_RNA.423-201ENST00000384057 113 ntBASIC0.3□□□□□ -2.36
HNF4AP41235 RNU6-972P-201ENST00000391208 107 ntBASIC0.3□□□□□ -2.36
HNF4AP41235 RNU6-466P-201ENST00000391224 103 ntBASIC0.3□□□□□ -2.36
HNF4AP41235 RNU6-887P-201ENST00000410660 100 ntBASIC0.3□□□□□ -2.36
HNF4AP41235 MTATP8P2-201ENST00000435212 202 ntBASIC0.3□□□□□ -2.36
HNF4AP41235 RNU6-287P-201ENST00000516230 98 ntBASIC0.3□□□□□ -2.36
HNF4AP41235 MTRNR2L2-201ENST00000604882 87 ntBASIC0.3□□□□□ -2.36
HNF4AP41235 Y_RNA.544-201ENST00000384650 113 ntBASIC0.29□□□□□ -2.36
HNF4AP41235 Y_RNA.596-201ENST00000410462 109 ntBASIC0.29□□□□□ -2.36
HNF4AP41235 RNU6-863P-201ENST00000515989 104 ntBASIC0.29□□□□□ -2.36
HNF4AP41235 RNU6-162P-201ENST00000516228 103 ntBASIC0.29□□□□□ -2.36
HNF4AP41235 RNU6-1232P-201ENST00000516299 86 ntBASIC0.29□□□□□ -2.36
HNF4AP41235 MIR4696-201ENST00000581431 70 ntBASIC0.29□□□□□ -2.36
HNF4AP41235 SNORA70.25-201ENST00000612741 95 ntBASIC0.29□□□□□ -2.36
HNF4AP41235 AP001318.4-201ENST00000616637 121 ntBASIC0.29□□□□□ -2.36
HNF4AP41235 Y_RNA.207-201ENST00000364142 106 ntBASIC0.28□□□□□ -2.36
HNF4AP41235 SNORD115-44-201ENST00000365391 82 ntBASIC0.28□□□□□ -2.36
HNF4AP41235 VTRNA1-3-201ENST00000365645 89 ntBASIC0.28□□□□□ -2.36
HNF4AP41235 MIR519E-201ENST00000385075 84 ntBASIC0.28□□□□□ -2.36
HNF4AP41235 MIR2113-201ENST00000459007 91 ntBASIC0.28□□□□□ -2.36
HNF4AP41235 MIR4536-1-201ENST00000583537 88 ntBASIC0.28□□□□□ -2.36
HNF4AP41235 RNU6-664P-201ENST00000362381 107 ntBASIC0.27□□□□□ -2.37
HNF4AP41235 Y_RNA.190-201ENST00000363964 101 ntBASIC0.27□□□□□ -2.37
HNF4AP41235 RNU6-815P-201ENST00000384080 113 ntBASIC0.27□□□□□ -2.37
HNF4AP41235 MIR617-201ENST00000385030 97 ntBASIC0.27□□□□□ -2.37
HNF4AP41235 RNA5SP484-201ENST00000458857 111 ntBASIC0.27□□□□□ -2.37
HNF4AP41235 SNORD4B-201ENST00000459083 72 ntBASIC0.27□□□□□ -2.37
HNF4AP41235 RNU6-158P-201ENST00000517104 100 ntBASIC0.27□□□□□ -2.37
HNF4AP41235 U7.3-201ENST00000616123 62 ntBASIC0.27□□□□□ -2.37
HNF4AP41235 Y_RNA.348-201ENST00000365403 103 ntBASIC0.26□□□□□ -2.37
HNF4AP41235 SNORD101-201ENST00000384027 73 ntBASIC0.26□□□□□ -2.37
HNF4AP41235 Y_RNA.495-201ENST00000384435 112 ntBASIC0.26□□□□□ -2.37
HNF4AP41235 AC108740.1-201ENST00000498629 225 ntBASIC0.26□□□□□ -2.37
HNF4AP41235 RNU6-65P-201ENST00000516332 98 ntBASIC0.26□□□□□ -2.37
HNF4AP41235 PVT1_3.1-201ENST00000620853 95 ntBASIC0.26□□□□□ -2.37
HNF4AP41235 MIRLET7F1-201ENST00000362202 87 ntBASIC0.25□□□□□ -2.37
HNF4AP41235 Y_RNA.96-201ENST00000363092 109 ntBASIC0.25□□□□□ -2.37
HNF4AP41235 RNU6-132P-201ENST00000383863 107 ntBASIC0.25□□□□□ -2.37
HNF4AP41235 SNORA2A-201ENST00000383885 135 ntBASIC0.25□□□□□ -2.37
HNF4AP41235 MIR489-201ENST00000384923 84 ntBASIC0.25□□□□□ -2.37
HNF4AP41235 AC093423.1-201ENST00000440817 142 ntBASIC0.25□□□□□ -2.37
HNF4AP41235 Y_RNA.81-201ENST00000362997 102 ntBASIC0.24□□□□□ -2.37
HNF4AP41235 RNA5SP62-201ENST00000363457 110 ntBASIC0.24□□□□□ -2.37
HNF4AP41235 RNU6-509P-201ENST00000363519 107 ntBASIC0.24□□□□□ -2.37
HNF4AP41235 SNORD114-23-201ENST00000363536 72 ntBASIC0.24□□□□□ -2.37
HNF4AP41235 RNU1-141P-201ENST00000364623 158 ntBASIC0.24□□□□□ -2.37
HNF4AP41235 Y_RNA.290-201ENST00000364879 114 ntBASIC0.24□□□□□ -2.37
HNF4AP41235 RNU6-32P-201ENST00000383948 107 ntBASIC0.24□□□□□ -2.37
HNF4AP41235 RNU6-13P-201ENST00000384248 107 ntBASIC0.24□□□□□ -2.37
HNF4AP41235 RNU6-12P-201ENST00000384604 107 ntBASIC0.24□□□□□ -2.37
HNF4AP41235 RNU6-41P-201ENST00000384741 107 ntBASIC0.24□□□□□ -2.37
HNF4AP41235 RNU7-74P-201ENST00000459104 62 ntBASIC0.24□□□□□ -2.37
HNF4AP41235 RNU6-848P-201ENST00000515948 107 ntBASIC0.24□□□□□ -2.37
HNF4AP41235 RNU6-617P-201ENST00000516147 107 ntBASIC0.24□□□□□ -2.37
HNF4AP41235 RNU6-473P-201ENST00000516164 107 ntBASIC0.24□□□□□ -2.37
HNF4AP41235 SNORA40.13-201ENST00000516379 120 ntBASIC0.24□□□□□ -2.37
HNF4AP41235 RNU6-1049P-201ENST00000516414 107 ntBASIC0.24□□□□□ -2.37
HNF4AP41235 AC026421.1-201ENST00000519101 163 ntBASIC0.24□□□□□ -2.37
HNF4AP41235 NAMPTP3-201ENST00000569273 224 ntBASIC0.24□□□□□ -2.37
HNF4AP41235 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.24□□□□□ -2.37
HNF4AP41235 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.23□□□□□ -2.37
HNF4AP41235 SNORD116-10-201ENST00000363791 102 ntBASIC0.23□□□□□ -2.37
HNF4AP41235 RNU6-153P-201ENST00000364422 104 ntBASIC0.23□□□□□ -2.37
HNF4AP41235 RNU6-905P-201ENST00000384434 107 ntBASIC0.23□□□□□ -2.37
HNF4AP41235 RNY1P4-201ENST00000384595 115 ntBASIC0.23□□□□□ -2.37
HNF4AP41235 MIR760-201ENST00000390220 80 ntBASIC0.23□□□□□ -2.37
HNF4AP41235 RNU6-519P-201ENST00000410590 108 ntBASIC0.23□□□□□ -2.37
HNF4AP41235 AC073261.1-201ENST00000429409 121 ntBASIC0.23□□□□□ -2.37
HNF4AP41235 MIR2052-201ENST00000636055 55 ntBASIC0.23□□□□□ -2.37
HNF4AP41235 AC073869.9-201ENST00000641610 120 ntBASIC0.23□□□□□ -2.37
HNF4AP41235 RNU6-640P-201ENST00000363693 105 ntBASIC0.22□□□□□ -2.37
HNF4AP41235 SNORD110-201ENST00000408189 75 ntBASIC0.22□□□□□ -2.37
HNF4AP41235 Y_RNA.609-201ENST00000410669 89 ntBASIC0.22□□□□□ -2.37
HNF4AP41235 AC069113.3-201ENST00000521019 150 ntBASIC0.22□□□□□ -2.37
HNF4AP41235 MIR5706-201ENST00000579841 80 ntBASIC0.22□□□□□ -2.37
HNF4AP41235 MIR5093-201ENST00000583199 100 ntBASIC0.22□□□□□ -2.37
HNF4AP41235 Y_RNA.239-201ENST00000364444 113 ntBASIC0.21□□□□□ -2.38
HNF4AP41235 RNA5SP128-201ENST00000365305 116 ntBASIC0.21□□□□□ -2.38
HNF4AP41235 MIR3064-201ENST00000581130 66 ntBASIC0.21□□□□□ -2.38
HNF4AP41235 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.21□□□□□ -2.38
HNF4AP41235 MIR499B-201ENST00000636498 73 ntBASIC0.21□□□□□ -2.38
HNF4AP41235 Y_RNA.36-201ENST00000362602 112 ntBASIC0.2□□□□□ -2.38
HNF4AP41235 MIR488-201ENST00000365739 83 ntBASIC0.2□□□□□ -2.38
HNF4AP41235 RNA5SP89-201ENST00000410300 108 ntBASIC0.2□□□□□ -2.38
HNF4AP41235 RNU6-935P-201ENST00000410371 100 ntBASIC0.2□□□□□ -2.38
HNF4AP41235 AC006210.1-201ENST00000424882 111 ntBASIC0.2□□□□□ -2.38
HNF4AP41235 HMGN2P22-201ENST00000427588 175 ntBASIC0.2□□□□□ -2.38
HNF4AP41235 RNU6-168P-201ENST00000516189 101 ntBASIC0.2□□□□□ -2.38
HNF4AP41235 SNORA9.1-201ENST00000362412 131 ntBASIC0.19□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms