Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNA5SP160-201ENST00000364866 120 ntBASIC1.79□□□□□ -2.12
MSX1P28360 RNU6-1126P-201ENST00000384002 107 ntBASIC1.79□□□□□ -2.12
MSX1P28360 MIR216B-201ENST00000390186 82 ntBASIC1.79□□□□□ -2.12
MSX1P28360 RNA5SP338-201ENST00000410495 85 ntBASIC1.79□□□□□ -2.12
MSX1P28360 RNU6-717P-201ENST00000459076 104 ntBASIC1.79□□□□□ -2.12
MSX1P28360 MIR4498-201ENST00000577599 66 ntBASIC1.79□□□□□ -2.12
MSX1P28360 AL157834.3-201ENST00000615543 103 ntBASIC1.79□□□□□ -2.12
MSX1P28360 SNORD116-24-201ENST00000384549 92 ntBASIC1.78□□□□□ -2.12
MSX1P28360 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.78□□□□□ -2.12
MSX1P28360 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.78□□□□□ -2.12
MSX1P28360 MIR548AG2-201ENST00000581228 64 ntBASIC1.78□□□□□ -2.12
MSX1P28360 MIR3920-201ENST00000581751 86 ntBASIC1.78□□□□□ -2.12
MSX1P28360 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
MSX1P28360 MIR520F-201ENST00000384824 87 ntBASIC1.77□□□□□ -2.13
MSX1P28360 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.77□□□□□ -2.13
MSX1P28360 AL691482.2-201ENST00000457453 84 ntBASIC1.77□□□□□ -2.13
MSX1P28360 RNU7-161P-201ENST00000517289 62 ntBASIC1.77□□□□□ -2.13
MSX1P28360 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
MSX1P28360 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
MSX1P28360 MIR9-2-201ENST00000384838 87 ntBASIC1.76□□□□□ -2.13
MSX1P28360 SNORD75.2-201ENST00000408784 58 ntBASIC1.76□□□□□ -2.13
MSX1P28360 AC108667.1-201ENST00000428618 249 ntBASIC1.76□□□□□ -2.13
MSX1P28360 RNU7-24P-201ENST00000458867 62 ntBASIC1.76□□□□□ -2.13
MSX1P28360 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.76□□□□□ -2.13
MSX1P28360 MIR617-201ENST00000385030 97 ntBASIC1.75□□□□□ -2.13
MSX1P28360 MIR1827-201ENST00000408549 66 ntBASIC1.75□□□□□ -2.13
MSX1P28360 AC067940.1-201ENST00000458411 300 ntBASIC1.75□□□□□ -2.13
MSX1P28360 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.75□□□□□ -2.13
MSX1P28360 RNU6-495P-201ENST00000362995 107 ntBASIC1.74□□□□□ -2.13
MSX1P28360 MIR4511-201ENST00000582784 87 ntBASIC1.74□□□□□ -2.13
MSX1P28360 AC103706.3-201ENST00000636297 85 ntBASIC1.74□□□□□ -2.13
MSX1P28360 RNA5SP489-201ENST00000410986 109 ntBASIC1.73□□□□□ -2.13
MSX1P28360 RNU7-104P-201ENST00000459398 79 ntBASIC1.73□□□□□ -2.13
MSX1P28360 SNORA70.22-201ENST00000517160 124 ntBASIC1.73□□□□□ -2.13
MSX1P28360 SNORD12-201ENST00000391002 90 ntBASIC1.72□□□□□ -2.13
MSX1P28360 RMST_2.1-201ENST00000617263 136 ntBASIC1.72□□□□□ -2.13
MSX1P28360 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.72□□□□□ -2.13
MSX1P28360 MIR378A-201ENST00000362177 66 ntBASIC1.71□□□□□ -2.14
MSX1P28360 SUMO2P12-201ENST00000405924 140 ntBASIC1.71□□□□□ -2.14
MSX1P28360 snoU13.31-201ENST00000607291 104 ntBASIC1.71□□□□□ -2.14
MSX1P28360 MIR548O2-201ENST00000616090 70 ntBASIC1.71□□□□□ -2.14
MSX1P28360 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.7□□□□□ -2.14
MSX1P28360 RNU6-1039P-201ENST00000383931 107 ntBASIC1.7□□□□□ -2.14
MSX1P28360 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.7□□□□□ -2.14
MSX1P28360 NAMPTP3-201ENST00000569273 224 ntBASIC1.7□□□□□ -2.14
MSX1P28360 MIR3122-201ENST00000577243 73 ntBASIC1.7□□□□□ -2.14
MSX1P28360 AC067863.3-201ENST00000624172 122 ntBASIC1.7□□□□□ -2.14
MSX1P28360 MIR519E-201ENST00000385075 84 ntBASIC1.69□□□□□ -2.14
MSX1P28360 SNORA17.3-201ENST00000391159 129 ntBASIC1.69□□□□□ -2.14
MSX1P28360 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.69□□□□□ -2.14
MSX1P28360 MIR6509-201ENST00000614603 85 ntBASIC1.69□□□□□ -2.14
MSX1P28360 SNORA16.1-201ENST00000364597 132 ntBASIC1.68□□□□□ -2.14
MSX1P28360 RNU1-123P-201ENST00000458950 160 ntBASIC1.68□□□□□ -2.14
MSX1P28360 RNU6-982P-201ENST00000516216 102 ntBASIC1.68□□□□□ -2.14
MSX1P28360 RNU6-135P-201ENST00000516769 101 ntBASIC1.68□□□□□ -2.14
MSX1P28360 AL136317.1-201ENST00000612653 226 ntBASIC1.68□□□□□ -2.14
MSX1P28360 RNA5SP190-201ENST00000365222 118 ntBASIC1.67□□□□□ -2.14
MSX1P28360 RNA5SP117-201ENST00000365294 118 ntBASIC1.67□□□□□ -2.14
MSX1P28360 RNU6-499P-201ENST00000365615 107 ntBASIC1.67□□□□□ -2.14
MSX1P28360 MTND4LP19-201ENST00000403051 166 ntBASIC1.67□□□□□ -2.14
MSX1P28360 AC002350.1-201ENST00000490759 375 ntBASIC1.67□□□□□ -2.14
MSX1P28360 SNORA40.6-201ENST00000391153 128 ntBASIC1.66□□□□□ -2.14
MSX1P28360 AC002429.1-201ENST00000437672 148 ntBASIC1.66□□□□□ -2.14
MSX1P28360 SNORD13-201ENST00000459299 104 ntBASIC1.66□□□□□ -2.14
MSX1P28360 SNORA25.15-201ENST00000516487 89 ntBASIC1.66□□□□□ -2.14
MSX1P28360 AC069503.3-201ENST00000618674 145 ntBASIC1.66□□□□□ -2.14
MSX1P28360 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
MSX1P28360 RNU6-54P-201ENST00000365563 107 ntBASIC1.65□□□□□ -2.15
MSX1P28360 AC003989.2-201ENST00000440224 169 ntBASIC1.65□□□□□ -2.15
MSX1P28360 MTND4LP1-201ENST00000446263 157 ntBASIC1.65□□□□□ -2.15
MSX1P28360 RNU7-74P-201ENST00000459104 62 ntBASIC1.65□□□□□ -2.15
MSX1P28360 AL109933.3-201ENST00000619095 188 ntBASIC1.65□□□□□ -2.15
MSX1P28360 AC084768.2-201ENST00000622736 221 ntBASIC1.65□□□□□ -2.15
MSX1P28360 AC073869.9-201ENST00000641610 120 ntBASIC1.65□□□□□ -2.15
MSX1P28360 Y_RNA.355-201ENST00000365462 98 ntBASIC1.64□□□□□ -2.15
MSX1P28360 MIR203A-201ENST00000384836 110 ntBASIC1.64□□□□□ -2.15
MSX1P28360 MIR644A-201ENST00000385262 94 ntBASIC1.64□□□□□ -2.15
MSX1P28360 RNU6-321P-201ENST00000410912 106 ntBASIC1.64□□□□□ -2.15
MSX1P28360 AC110620.1-201ENST00000416042 228 ntBASIC1.64□□□□□ -2.15
MSX1P28360 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.64□□□□□ -2.15
MSX1P28360 RNU6-668P-201ENST00000364180 107 ntBASIC1.63□□□□□ -2.15
MSX1P28360 RNU6-1187P-201ENST00000364771 110 ntBASIC1.63□□□□□ -2.15
MSX1P28360 RNU6-669P-201ENST00000365575 107 ntBASIC1.63□□□□□ -2.15
MSX1P28360 MIR222-201ENST00000384992 110 ntBASIC1.63□□□□□ -2.15
MSX1P28360 MIR9-3-201ENST00000385084 90 ntBASIC1.63□□□□□ -2.15
MSX1P28360 TRMT112P2-201ENST00000512910 132 ntBASIC1.63□□□□□ -2.15
MSX1P28360 MIR4419B-201ENST00000577260 68 ntBASIC1.63□□□□□ -2.15
MSX1P28360 MIR4639-201ENST00000584938 69 ntBASIC1.63□□□□□ -2.15
MSX1P28360 MIR8081-201ENST00000611533 95 ntBASIC1.63□□□□□ -2.15
MSX1P28360 RNU6-987P-201ENST00000384759 104 ntBASIC1.62□□□□□ -2.15
MSX1P28360 MIR499A-201ENST00000384903 122 ntBASIC1.62□□□□□ -2.15
MSX1P28360 SNORD41.1-201ENST00000391000 69 ntBASIC1.62□□□□□ -2.15
MSX1P28360 AC244669.1-204ENST00000621564 178 ntBASIC1.62□□□□□ -2.15
MSX1P28360 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
MSX1P28360 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
MSX1P28360 SNORA7.1-201ENST00000363750 139 ntBASIC1.61□□□□□ -2.15
MSX1P28360 SNORD28-201ENST00000384706 75 ntBASIC1.61□□□□□ -2.15
MSX1P28360 RNU6-469P-201ENST00000516253 101 ntBASIC1.61□□□□□ -2.15
MSX1P28360 RNU6-1110P-201ENST00000516462 101 ntBASIC1.61□□□□□ -2.15
MSX1P28360 MIR3657-201ENST00000584818 117 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 170.2 ms