Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 MIR4639-201ENST00000584938 69 ntBASIC0.8□□□□□ -2.28
HOXD9P28356 AL353765.1-201ENST00000605514 183 ntBASIC0.8□□□□□ -2.28
HOXD9P28356 Y_RNA.73-201ENST00000362910 113 ntBASIC0.79□□□□□ -2.28
HOXD9P28356 RNU4-45P-201ENST00000365469 141 ntBASIC0.79□□□□□ -2.28
HOXD9P28356 RNU6-132P-201ENST00000383863 107 ntBASIC0.79□□□□□ -2.28
HOXD9P28356 RNU6-811P-201ENST00000384069 107 ntBASIC0.79□□□□□ -2.28
HOXD9P28356 SNORD28-201ENST00000384706 75 ntBASIC0.79□□□□□ -2.28
HOXD9P28356 MIR548U-201ENST00000390728 81 ntBASIC0.79□□□□□ -2.28
HOXD9P28356 Y_RNA.596-201ENST00000410462 109 ntBASIC0.79□□□□□ -2.28
HOXD9P28356 RNU7-171P-201ENST00000459581 62 ntBASIC0.79□□□□□ -2.28
HOXD9P28356 RNU6-469P-201ENST00000516253 101 ntBASIC0.79□□□□□ -2.28
HOXD9P28356 MIR5000-201ENST00000577717 103 ntBASIC0.79□□□□□ -2.28
HOXD9P28356 MIR3678-201ENST00000578455 94 ntBASIC0.79□□□□□ -2.28
HOXD9P28356 MIR3064-201ENST00000581130 66 ntBASIC0.79□□□□□ -2.28
HOXD9P28356 AC104996.3-201ENST00000590718 94 ntBASIC0.79□□□□□ -2.28
HOXD9P28356 U6.100-201ENST00000636230 99 ntBASIC0.79□□□□□ -2.28
HOXD9P28356 AC006160.2-201ENST00000637708 154 ntBASIC0.79□□□□□ -2.28
HOXD9P28356 RNU6-664P-201ENST00000362381 107 ntBASIC0.78□□□□□ -2.28
HOXD9P28356 RNU4-32P-201ENST00000363404 141 ntBASIC0.78□□□□□ -2.28
HOXD9P28356 SNORD18A-201ENST00000363753 72 ntBASIC0.78□□□□□ -2.28
HOXD9P28356 SNORD115-44-201ENST00000365391 82 ntBASIC0.78□□□□□ -2.28
HOXD9P28356 Y_RNA.426-201ENST00000384068 113 ntBASIC0.78□□□□□ -2.28
HOXD9P28356 Y_RNA.611-201ENST00000410682 108 ntBASIC0.78□□□□□ -2.28
HOXD9P28356 RPL39P28-201ENST00000465655 155 ntBASIC0.78□□□□□ -2.28
HOXD9P28356 AC093729.1-201ENST00000513074 128 ntBASIC0.78□□□□□ -2.28
HOXD9P28356 AC011195.1-201ENST00000578177 177 ntBASIC0.78□□□□□ -2.28
HOXD9P28356 MIR18A-201ENST00000362310 71 ntBASIC0.77□□□□□ -2.29
HOXD9P28356 RNU6-1187P-201ENST00000364771 110 ntBASIC0.77□□□□□ -2.29
HOXD9P28356 RNA5SP173-201ENST00000364857 136 ntBASIC0.77□□□□□ -2.29
HOXD9P28356 SNORD101-201ENST00000384027 73 ntBASIC0.77□□□□□ -2.29
HOXD9P28356 RNU6-242P-201ENST00000384359 107 ntBASIC0.77□□□□□ -2.29
HOXD9P28356 Y_RNA.607-201ENST00000410597 98 ntBASIC0.77□□□□□ -2.29
HOXD9P28356 RNU6-592P-201ENST00000411333 103 ntBASIC0.77□□□□□ -2.29
HOXD9P28356 RNA5SP47-201ENST00000517230 109 ntBASIC0.77□□□□□ -2.29
HOXD9P28356 MIRLET7F1-201ENST00000362202 87 ntBASIC0.76□□□□□ -2.29
HOXD9P28356 Y_RNA.239-201ENST00000364444 113 ntBASIC0.76□□□□□ -2.29
HOXD9P28356 RNU6-1276P-201ENST00000365372 104 ntBASIC0.76□□□□□ -2.29
HOXD9P28356 RNA5SP292-201ENST00000390974 118 ntBASIC0.76□□□□□ -2.29
HOXD9P28356 RNU7-153P-201ENST00000516455 62 ntBASIC0.76□□□□□ -2.29
HOXD9P28356 SNORA18.5-201ENST00000516616 101 ntBASIC0.76□□□□□ -2.29
HOXD9P28356 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.76□□□□□ -2.29
HOXD9P28356 AC140658.3-201ENST00000567603 271 ntBASIC0.76□□□□□ -2.29
HOXD9P28356 MIR4714-201ENST00000580728 77 ntBASIC0.76□□□□□ -2.29
HOXD9P28356 AC244669.1-204ENST00000621564 178 ntBASIC0.76□□□□□ -2.29
HOXD9P28356 SNORD115-37-201ENST00000363768 82 ntBASIC0.75□□□□□ -2.29
HOXD9P28356 Y_RNA.491-201ENST00000384417 107 ntBASIC0.75□□□□□ -2.29
HOXD9P28356 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.75□□□□□ -2.29
HOXD9P28356 MIR4666B-201ENST00000578142 81 ntBASIC0.75□□□□□ -2.29
HOXD9P28356 MIR4796-201ENST00000580742 81 ntBASIC0.75□□□□□ -2.29
HOXD9P28356 MIR3920-201ENST00000581751 86 ntBASIC0.75□□□□□ -2.29
HOXD9P28356 MIR6828-201ENST00000636181 60 ntBASIC0.75□□□□□ -2.29
HOXD9P28356 MIR6866-201ENST00000638146 69 ntBASIC0.75□□□□□ -2.29
HOXD9P28356 Y_RNA.207-201ENST00000364142 106 ntBASIC0.74□□□□□ -2.29
HOXD9P28356 RNU6-1229P-201ENST00000364295 107 ntBASIC0.74□□□□□ -2.29
HOXD9P28356 RNU6-573P-201ENST00000383938 106 ntBASIC0.74□□□□□ -2.29
HOXD9P28356 SNORD41.1-201ENST00000391000 69 ntBASIC0.74□□□□□ -2.29
HOXD9P28356 RNU6-287P-201ENST00000516230 98 ntBASIC0.74□□□□□ -2.29
HOXD9P28356 SNORA25.13-201ENST00000516395 103 ntBASIC0.74□□□□□ -2.29
HOXD9P28356 RNU7-13P-201ENST00000516413 62 ntBASIC0.74□□□□□ -2.29
HOXD9P28356 MIR4653-201ENST00000585107 83 ntBASIC0.74□□□□□ -2.29
HOXD9P28356 MIR6835-201ENST00000621552 64 ntBASIC0.74□□□□□ -2.29
HOXD9P28356 AC067863.3-201ENST00000624172 122 ntBASIC0.74□□□□□ -2.29
HOXD9P28356 RNU6-624P-201ENST00000363411 107 ntBASIC0.73□□□□□ -2.29
HOXD9P28356 MIR508-201ENST00000384857 115 ntBASIC0.73□□□□□ -2.29
HOXD9P28356 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.73□□□□□ -2.29
HOXD9P28356 SCARNA16.5-201ENST00000517114 183 ntBASIC0.73□□□□□ -2.29
HOXD9P28356 MIR6515-201ENST00000619843 57 ntBASIC0.73□□□□□ -2.29
HOXD9P28356 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.72□□□□□ -2.29
HOXD9P28356 Y_RNA.219-201ENST00000364232 113 ntBASIC0.72□□□□□ -2.29
HOXD9P28356 RNU6-726P-201ENST00000364680 107 ntBASIC0.72□□□□□ -2.29
HOXD9P28356 RNU6-1126P-201ENST00000384002 107 ntBASIC0.72□□□□□ -2.29
HOXD9P28356 RNU6-787P-201ENST00000384032 107 ntBASIC0.72□□□□□ -2.29
HOXD9P28356 RNU6-935P-201ENST00000410371 100 ntBASIC0.72□□□□□ -2.29
HOXD9P28356 RNU7-104P-201ENST00000459398 79 ntBASIC0.72□□□□□ -2.29
HOXD9P28356 RNA5SP436-201ENST00000516020 115 ntBASIC0.72□□□□□ -2.29
HOXD9P28356 RNU6-110P-201ENST00000384508 104 ntBASIC0.71□□□□□ -2.3
HOXD9P28356 U3.27-201ENST00000391237 200 ntBASIC0.71□□□□□ -2.3
HOXD9P28356 MIR548AG2-201ENST00000581228 64 ntBASIC0.71□□□□□ -2.3
HOXD9P28356 Evf-2_5p.1-201ENST00000614213 142 ntBASIC0.71□□□□□ -2.3
HOXD9P28356 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.71□□□□□ -2.3
HOXD9P28356 MIR3202-2-201ENST00000635980 79 ntBASIC0.71□□□□□ -2.3
HOXD9P28356 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
HOXD9P28356 MIR617-201ENST00000385030 97 ntBASIC0.7□□□□□ -2.3
HOXD9P28356 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.7□□□□□ -2.3
HOXD9P28356 RNA5SP94-201ENST00000516917 108 ntBASIC0.7□□□□□ -2.3
HOXD9P28356 SNORA36.1-201ENST00000363424 132 ntBASIC0.69□□□□□ -2.3
HOXD9P28356 RNU6-1051P-201ENST00000365471 102 ntBASIC0.69□□□□□ -2.3
HOXD9P28356 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.69□□□□□ -2.3
HOXD9P28356 RNA5SP222-201ENST00000411039 105 ntBASIC0.69□□□□□ -2.3
HOXD9P28356 MIR2113-201ENST00000459007 91 ntBASIC0.69□□□□□ -2.3
HOXD9P28356 RNU7-74P-201ENST00000459104 62 ntBASIC0.69□□□□□ -2.3
HOXD9P28356 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.69□□□□□ -2.3
HOXD9P28356 MIR1245B-201ENST00000636115 69 ntBASIC0.69□□□□□ -2.3
HOXD9P28356 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
HOXD9P28356 SNORA63.2-201ENST00000362603 126 ntBASIC0.68□□□□□ -2.3
HOXD9P28356 Y_RNA.316-201ENST00000365118 111 ntBASIC0.68□□□□□ -2.3
HOXD9P28356 RNY4P3-201ENST00000365254 95 ntBASIC0.68□□□□□ -2.3
HOXD9P28356 SNORD78.1-201ENST00000390866 65 ntBASIC0.68□□□□□ -2.3
HOXD9P28356 RNU6-557P-201ENST00000516842 110 ntBASIC0.68□□□□□ -2.3
HOXD9P28356 AL590095.2-201ENST00000604136 117 ntBASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 177.2 ms