Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 SNORA75.3-201ENST00000391231 150 ntBASIC3.84□□□□□ -1.79
MSH5O43196 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC3.84□□□□□ -1.79
MSH5O43196 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC3.84□□□□□ -1.79
MSH5O43196 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
MSH5O43196 SNORD109B-201ENST00000458961 67 ntBASIC3.83□□□□□ -1.8
MSH5O43196 SNORD109A-201ENST00000459128 67 ntBASIC3.83□□□□□ -1.8
MSH5O43196 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
MSH5O43196 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
MSH5O43196 RNA5SP470-201ENST00000516463 106 ntBASIC3.82□□□□□ -1.8
MSH5O43196 RNU6-135P-201ENST00000516769 101 ntBASIC3.82□□□□□ -1.8
MSH5O43196 RNA5SP402-201ENST00000517148 110 ntBASIC3.82□□□□□ -1.8
MSH5O43196 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.82□□□□□ -1.8
MSH5O43196 SNORA70B-201ENST00000384210 135 ntBASIC3.81□□□□□ -1.8
MSH5O43196 MIR627-201ENST00000384979 97 ntBASIC3.81□□□□□ -1.8
MSH5O43196 SNORD88.1-201ENST00000408684 91 ntBASIC3.81□□□□□ -1.8
MSH5O43196 RNA5SP450-201ENST00000411206 102 ntBASIC3.81□□□□□ -1.8
MSH5O43196 MIR4524B-201ENST00000581569 115 ntBASIC3.8□□□□□ -1.8
MSH5O43196 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
MSH5O43196 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
MSH5O43196 SNORA44.1-201ENST00000517031 108 ntBASIC3.79□□□□□ -1.8
MSH5O43196 MIR4769-201ENST00000584126 77 ntBASIC3.79□□□□□ -1.8
MSH5O43196 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
MSH5O43196 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
MSH5O43196 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.79□□□□□ -1.8
MSH5O43196 MAPK10-266ENST00000641066 6555 ntBASIC3.78□□□□□ -1.8
MSH5O43196 AL354695.1-201ENST00000427935 228 ntBASIC3.78□□□□□ -1.8
MSH5O43196 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC3.78□□□□□ -1.8
MSH5O43196 RNU6-1091P-201ENST00000363945 107 ntBASIC3.77□□□□□ -1.81
MSH5O43196 AC025627.3-201ENST00000582078 182 ntBASIC3.77□□□□□ -1.81
MSH5O43196 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
MSH5O43196 RNU6-851P-201ENST00000384565 107 ntBASIC3.76□□□□□ -1.81
MSH5O43196 snoU13.26-201ENST00000459452 105 ntBASIC3.76□□□□□ -1.81
MSH5O43196 RNU6-469P-201ENST00000516253 101 ntBASIC3.76□□□□□ -1.81
MSH5O43196 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC3.76□□□□□ -1.81
MSH5O43196 SNORA6-201ENST00000384033 151 ntBASIC3.75□□□□□ -1.81
MSH5O43196 MIR504-201ENST00000385065 83 ntBASIC3.75□□□□□ -1.81
MSH5O43196 AC092427.1-202ENST00000430569 476 ntBASIC3.75□□□□□ -1.81
MSH5O43196 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3.75□□□□□ -1.81
MSH5O43196 MIR6773-201ENST00000612812 74 ntBASIC3.74□□□□□ -1.81
MSH5O43196 MIR1-1-201ENST00000362147 71 ntBASIC3.73□□□□□ -1.81
MSH5O43196 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
MSH5O43196 AC107016.2-201ENST00000547968 190 ntBASIC3.73□□□□□ -1.81
MSH5O43196 MIR4426-201ENST00000640330 63 ntBASIC3.73□□□□□ -1.81
MSH5O43196 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC3.72□□□□□ -1.81
MSH5O43196 SNORD57-201ENST00000448188 72 ntBASIC3.72□□□□□ -1.81
MSH5O43196 AC002350.1-201ENST00000490759 375 ntBASIC3.72□□□□□ -1.81
MSH5O43196 RNA5SP270-201ENST00000411361 118 ntBASIC3.71□□□□□ -1.82
MSH5O43196 SNORA77B-201ENST00000578179 125 ntBASIC3.71□□□□□ -1.82
MSH5O43196 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
MSH5O43196 SUMO1P4-201ENST00000429430 302 ntBASIC3.7□□□□□ -1.82
MSH5O43196 AC048334.1-201ENST00000477975 159 ntBASIC3.7□□□□□ -1.82
MSH5O43196 RNU6-165P-201ENST00000517170 99 ntBASIC3.7□□□□□ -1.82
MSH5O43196 RNA5SP47-201ENST00000517230 109 ntBASIC3.7□□□□□ -1.82
MSH5O43196 Y_RNA.321-201ENST00000365149 102 ntBASIC3.69□□□□□ -1.82
MSH5O43196 Y_RNA.363-201ENST00000365529 113 ntBASIC3.69□□□□□ -1.82
MSH5O43196 SNORD53-201ENST00000579969 78 ntBASIC3.69□□□□□ -1.82
MSH5O43196 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.69□□□□□ -1.82
MSH5O43196 RNA5SP24-201ENST00000516478 95 ntBASIC3.68□□□□□ -1.82
MSH5O43196 MIR8063-201ENST00000621930 81 ntBASIC3.68□□□□□ -1.82
MSH5O43196 RNU6-859P-201ENST00000362728 107 ntBASIC3.67□□□□□ -1.82
MSH5O43196 SNORA9.2-201ENST00000365361 133 ntBASIC3.67□□□□□ -1.82
MSH5O43196 AC010297.1-201ENST00000623948 149 ntBASIC3.67□□□□□ -1.82
MSH5O43196 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
MSH5O43196 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.67□□□□□ -1.82
MSH5O43196 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
MSH5O43196 SNORD18A-201ENST00000363753 72 ntBASIC3.66□□□□□ -1.82
MSH5O43196 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
MSH5O43196 AC006210.1-201ENST00000424882 111 ntBASIC3.66□□□□□ -1.82
MSH5O43196 MIR6817-201ENST00000615588 66 ntBASIC3.66□□□□□ -1.82
MSH5O43196 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
MSH5O43196 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
MSH5O43196 RNA5SP68-201ENST00000363885 119 ntBASIC3.65□□□□□ -1.83
MSH5O43196 MIR3170-201ENST00000582699 77 ntBASIC3.65□□□□□ -1.83
MSH5O43196 MIR3670-2-201ENST00000582974 65 ntBASIC3.65□□□□□ -1.83
MSH5O43196 MIR3670-1-201ENST00000584160 65 ntBASIC3.65□□□□□ -1.83
MSH5O43196 MIR3670-3-201ENST00000584855 65 ntBASIC3.65□□□□□ -1.83
MSH5O43196 MIR3670-4-201ENST00000612260 65 ntBASIC3.65□□□□□ -1.83
MSH5O43196 AL162376.1-201ENST00000624117 175 ntBASIC3.65□□□□□ -1.83
MSH5O43196 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
MSH5O43196 RNU7-88P-201ENST00000458752 63 ntBASIC3.64□□□□□ -1.83
MSH5O43196 RNA5SP148-201ENST00000516527 94 ntBASIC3.64□□□□□ -1.83
MSH5O43196 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.64□□□□□ -1.83
MSH5O43196 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC3.64□□□□□ -1.83
MSH5O43196 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
MSH5O43196 RNU1-112P-201ENST00000364401 164 ntBASIC3.63□□□□□ -1.83
MSH5O43196 RNA5SP274-201ENST00000410484 108 ntBASIC3.63□□□□□ -1.83
MSH5O43196 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
MSH5O43196 RNY1P8-201ENST00000383970 114 ntBASIC3.62□□□□□ -1.83
MSH5O43196 SNORD110-201ENST00000408189 75 ntBASIC3.62□□□□□ -1.83
MSH5O43196 U7.5-201ENST00000517224 61 ntBASIC3.62□□□□□ -1.83
MSH5O43196 MIRLET7B-201ENST00000385140 83 ntBASIC3.61□□□□□ -1.83
MSH5O43196 AL138827.1-201ENST00000402666 306 ntBASIC3.61□□□□□ -1.83
MSH5O43196 SNORD63.1-201ENST00000516178 80 ntBASIC3.61□□□□□ -1.83
MSH5O43196 AL137847.3-201ENST00000611521 109 ntBASIC3.61□□□□□ -1.83
MSH5O43196 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
MSH5O43196 AC244090.1-201ENST00000441884 93 ntBASIC3.6□□□□□ -1.83
MSH5O43196 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.59□□□□□ -1.83
MSH5O43196 snoU13.15-201ENST00000459407 104 ntBASIC3.59□□□□□ -1.83
MSH5O43196 MIR4287-201ENST00000579398 78 ntBASIC3.59□□□□□ -1.83
MSH5O43196 FO624990.1-201ENST00000636373 85 ntBASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 174.5 ms