Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 MIR548J-201ENST00000408833 112 ntBASIC1.62□□□□□ -2.15
CCDC87Q9NVE4 AC097635.1-201ENST00000450678 155 ntBASIC1.62□□□□□ -2.15
CCDC87Q9NVE4 RNU7-171P-201ENST00000459581 62 ntBASIC1.62□□□□□ -2.15
CCDC87Q9NVE4 Y_RNA.809-201ENST00000516058 95 ntBASIC1.62□□□□□ -2.15
CCDC87Q9NVE4 RNU6-65P-201ENST00000516332 98 ntBASIC1.62□□□□□ -2.15
CCDC87Q9NVE4 RNA5SP61-201ENST00000516453 100 ntBASIC1.62□□□□□ -2.15
CCDC87Q9NVE4 MIR4536-1-201ENST00000583537 88 ntBASIC1.62□□□□□ -2.15
CCDC87Q9NVE4 MIR548BB-201ENST00000626714 66 ntBASIC1.62□□□□□ -2.15
CCDC87Q9NVE4 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
CCDC87Q9NVE4 Y_RNA.73-201ENST00000362910 113 ntBASIC1.61□□□□□ -2.15
CCDC87Q9NVE4 RNU6-573P-201ENST00000383938 106 ntBASIC1.61□□□□□ -2.15
CCDC87Q9NVE4 RNU6-535P-201ENST00000384722 107 ntBASIC1.61□□□□□ -2.15
CCDC87Q9NVE4 MIR520F-201ENST00000384824 87 ntBASIC1.61□□□□□ -2.15
CCDC87Q9NVE4 Y_RNA.611-201ENST00000410682 108 ntBASIC1.61□□□□□ -2.15
CCDC87Q9NVE4 RNU6-592P-201ENST00000411333 103 ntBASIC1.61□□□□□ -2.15
CCDC87Q9NVE4 RPS29P23-201ENST00000458635 123 ntBASIC1.61□□□□□ -2.15
CCDC87Q9NVE4 RNU7-85P-201ENST00000458851 63 ntBASIC1.61□□□□□ -2.15
CCDC87Q9NVE4 RNU6-1110P-201ENST00000516462 101 ntBASIC1.61□□□□□ -2.15
CCDC87Q9NVE4 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.61□□□□□ -2.15
CCDC87Q9NVE4 MIR3202-2-201ENST00000635980 79 ntBASIC1.61□□□□□ -2.15
CCDC87Q9NVE4 SNORD115-37-201ENST00000363768 82 ntBASIC1.6□□□□□ -2.15
CCDC87Q9NVE4 MIR200A-201ENST00000384875 90 ntBASIC1.6□□□□□ -2.15
CCDC87Q9NVE4 RNU7-195P-201ENST00000458793 62 ntBASIC1.6□□□□□ -2.15
CCDC87Q9NVE4 MIR6767-201ENST00000637302 66 ntBASIC1.6□□□□□ -2.15
CCDC87Q9NVE4 Y_RNA.283-201ENST00000364798 112 ntBASIC1.59□□□□□ -2.15
CCDC87Q9NVE4 RNU6-291P-201ENST00000384720 107 ntBASIC1.59□□□□□ -2.15
CCDC87Q9NVE4 snoU13.11-201ENST00000459219 104 ntBASIC1.59□□□□□ -2.15
CCDC87Q9NVE4 U7.7-201ENST00000459276 60 ntBASIC1.59□□□□□ -2.15
CCDC87Q9NVE4 AC006160.2-201ENST00000637708 154 ntBASIC1.59□□□□□ -2.15
CCDC87Q9NVE4 Y_RNA.174-201ENST00000363781 105 ntBASIC1.58□□□□□ -2.16
CCDC87Q9NVE4 AC093729.1-201ENST00000513074 128 ntBASIC1.58□□□□□ -2.16
CCDC87Q9NVE4 AC019288.1-201ENST00000557918 224 ntBASIC1.58□□□□□ -2.16
CCDC87Q9NVE4 AC008608.1-201ENST00000603910 127 ntBASIC1.58□□□□□ -2.16
CCDC87Q9NVE4 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.58□□□□□ -2.16
CCDC87Q9NVE4 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.58□□□□□ -2.16
CCDC87Q9NVE4 SNORA25.8-201ENST00000364831 128 ntBASIC1.57□□□□□ -2.16
CCDC87Q9NVE4 Y_RNA.607-201ENST00000410597 98 ntBASIC1.57□□□□□ -2.16
CCDC87Q9NVE4 Y_RNA.685-201ENST00000516532 108 ntBASIC1.57□□□□□ -2.16
CCDC87Q9NVE4 MIR1245B-201ENST00000636115 69 ntBASIC1.57□□□□□ -2.16
CCDC87Q9NVE4 MIR758-201ENST00000390227 88 ntBASIC1.56□□□□□ -2.16
CCDC87Q9NVE4 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
CCDC87Q9NVE4 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.56□□□□□ -2.16
CCDC87Q9NVE4 SNORD115-27-201ENST00000364430 82 ntBASIC1.55□□□□□ -2.16
CCDC87Q9NVE4 MIR599-201ENST00000385069 95 ntBASIC1.55□□□□□ -2.16
CCDC87Q9NVE4 MIR548U-201ENST00000390728 81 ntBASIC1.55□□□□□ -2.16
CCDC87Q9NVE4 SNORD78.1-201ENST00000390866 65 ntBASIC1.55□□□□□ -2.16
CCDC87Q9NVE4 AC244505.6-201ENST00000452829 130 ntBASIC1.55□□□□□ -2.16
CCDC87Q9NVE4 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.55□□□□□ -2.16
CCDC87Q9NVE4 AC068338.1-201ENST00000565567 176 ntBASIC1.55□□□□□ -2.16
CCDC87Q9NVE4 MIR4666B-201ENST00000578142 81 ntBASIC1.55□□□□□ -2.16
CCDC87Q9NVE4 MIR26B-201ENST00000362251 77 ntBASIC1.54□□□□□ -2.16
CCDC87Q9NVE4 Y_RNA.205-201ENST00000364128 113 ntBASIC1.54□□□□□ -2.16
CCDC87Q9NVE4 RNU6-811P-201ENST00000384069 107 ntBASIC1.54□□□□□ -2.16
CCDC87Q9NVE4 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.54□□□□□ -2.16
CCDC87Q9NVE4 RNU4-32P-201ENST00000363404 141 ntBASIC1.53□□□□□ -2.16
CCDC87Q9NVE4 RNU6-957P-201ENST00000363652 99 ntBASIC1.53□□□□□ -2.16
CCDC87Q9NVE4 RNU6-75P-201ENST00000515944 104 ntBASIC1.53□□□□□ -2.16
CCDC87Q9NVE4 MIR7974-201ENST00000615835 79 ntBASIC1.53□□□□□ -2.16
CCDC87Q9NVE4 RNU1-124P-201ENST00000363861 145 ntBASIC1.52□□□□□ -2.17
CCDC87Q9NVE4 RNU6-524P-201ENST00000384270 107 ntBASIC1.52□□□□□ -2.17
CCDC87Q9NVE4 MIR520H-201ENST00000385126 88 ntBASIC1.52□□□□□ -2.17
CCDC87Q9NVE4 SNORD89-201ENST00000390981 114 ntBASIC1.52□□□□□ -2.17
CCDC87Q9NVE4 RNU6-955P-201ENST00000410497 104 ntBASIC1.52□□□□□ -2.17
CCDC87Q9NVE4 AC087343.1-201ENST00000477341 475 ntBASIC1.52□□□□□ -2.17
CCDC87Q9NVE4 AC025627.3-201ENST00000582078 182 ntBASIC1.52□□□□□ -2.17
CCDC87Q9NVE4 MIR4295-201ENST00000585286 85 ntBASIC1.52□□□□□ -2.17
CCDC87Q9NVE4 TRDV1-202ENST00000621643 102 ntBASIC1.52□□□□□ -2.17
CCDC87Q9NVE4 SNORD105-201ENST00000386910 85 ntBASIC1.51□□□□□ -2.17
CCDC87Q9NVE4 MIR942-201ENST00000401111 86 ntBASIC1.51□□□□□ -2.17
CCDC87Q9NVE4 uc_338.16-201ENST00000621804 95 ntBASIC1.51□□□□□ -2.17
CCDC87Q9NVE4 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.51□□□□□ -2.17
CCDC87Q9NVE4 RNA5SP245-201ENST00000364239 121 ntBASIC1.5□□□□□ -2.17
CCDC87Q9NVE4 SNORD114-24-201ENST00000365029 72 ntBASIC1.5□□□□□ -2.17
CCDC87Q9NVE4 RNU6-135P-201ENST00000516769 101 ntBASIC1.5□□□□□ -2.17
CCDC87Q9NVE4 RNA5SP404-201ENST00000517118 132 ntBASIC1.49□□□□□ -2.17
CCDC87Q9NVE4 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.49□□□□□ -2.17
CCDC87Q9NVE4 RNA5SP117-201ENST00000365294 118 ntBASIC1.48□□□□□ -2.17
CCDC87Q9NVE4 Y_RNA.437-201ENST00000384113 113 ntBASIC1.48□□□□□ -2.17
CCDC87Q9NVE4 RNU6-1124P-201ENST00000384169 107 ntBASIC1.48□□□□□ -2.17
CCDC87Q9NVE4 RNA5SP436-201ENST00000516020 115 ntBASIC1.48□□□□□ -2.17
CCDC87Q9NVE4 SNORA31.14-201ENST00000516728 116 ntBASIC1.48□□□□□ -2.17
CCDC87Q9NVE4 AC140658.3-201ENST00000567603 271 ntBASIC1.48□□□□□ -2.17
CCDC87Q9NVE4 MIR3064-201ENST00000581130 66 ntBASIC1.48□□□□□ -2.17
CCDC87Q9NVE4 AC104996.3-201ENST00000590718 94 ntBASIC1.48□□□□□ -2.17
CCDC87Q9NVE4 MIR618-201ENST00000385287 98 ntBASIC1.47□□□□□ -2.17
CCDC87Q9NVE4 RNU6-1275P-201ENST00000391087 107 ntBASIC1.47□□□□□ -2.17
CCDC87Q9NVE4 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.47□□□□□ -2.17
CCDC87Q9NVE4 AC002350.1-201ENST00000490759 375 ntBASIC1.47□□□□□ -2.17
CCDC87Q9NVE4 Y_RNA.32-201ENST00000362589 110 ntBASIC1.46□□□□□ -2.18
CCDC87Q9NVE4 SNORD124-201ENST00000459577 104 ntBASIC1.46□□□□□ -2.18
CCDC87Q9NVE4 RNU6-1265P-201ENST00000516342 103 ntBASIC1.46□□□□□ -2.18
CCDC87Q9NVE4 SNORA25.13-201ENST00000516395 103 ntBASIC1.46□□□□□ -2.18
CCDC87Q9NVE4 MIR4796-201ENST00000580742 81 ntBASIC1.46□□□□□ -2.18
CCDC87Q9NVE4 Y_RNA.239-201ENST00000364444 113 ntBASIC1.45□□□□□ -2.18
CCDC87Q9NVE4 Y_RNA.491-201ENST00000384417 107 ntBASIC1.45□□□□□ -2.18
CCDC87Q9NVE4 Y_RNA.596-201ENST00000410462 109 ntBASIC1.45□□□□□ -2.18
CCDC87Q9NVE4 RNU7-153P-201ENST00000516455 62 ntBASIC1.45□□□□□ -2.18
CCDC87Q9NVE4 SNORA18.5-201ENST00000516616 101 ntBASIC1.45□□□□□ -2.18
CCDC87Q9NVE4 MTRNR2L2-201ENST00000604882 87 ntBASIC1.45□□□□□ -2.18
CCDC87Q9NVE4 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.44□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 185.5 ms