Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.9□□□□□ -2.27
TRIM39Q9HCM9 Y_RNA.221-201ENST00000364248 96 ntBASIC0.89□□□□□ -2.27
TRIM39Q9HCM9 MIR518E-201ENST00000385252 88 ntBASIC0.89□□□□□ -2.27
TRIM39Q9HCM9 Y_RNA.648-201ENST00000459455 110 ntBASIC0.89□□□□□ -2.27
TRIM39Q9HCM9 MIR373-201ENST00000362273 69 ntBASIC0.88□□□□□ -2.27
TRIM39Q9HCM9 SNORD28-201ENST00000384706 75 ntBASIC0.88□□□□□ -2.27
TRIM39Q9HCM9 MIR140-201ENST00000385282 100 ntBASIC0.88□□□□□ -2.27
TRIM39Q9HCM9 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.88□□□□□ -2.27
TRIM39Q9HCM9 Y_RNA.694-201ENST00000516677 117 ntBASIC0.88□□□□□ -2.27
TRIM39Q9HCM9 AL078603.1-201ENST00000603824 313 ntBASIC0.88□□□□□ -2.27
TRIM39Q9HCM9 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.88□□□□□ -2.27
TRIM39Q9HCM9 Y_RNA.220-201ENST00000364244 109 ntBASIC0.87□□□□□ -2.27
TRIM39Q9HCM9 RNU6-905P-201ENST00000384434 107 ntBASIC0.87□□□□□ -2.27
TRIM39Q9HCM9 MIR3973-201ENST00000579824 107 ntBASIC0.87□□□□□ -2.27
TRIM39Q9HCM9 AC244669.1-204ENST00000621564 178 ntBASIC0.87□□□□□ -2.27
TRIM39Q9HCM9 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
TRIM39Q9HCM9 RNU6-640P-201ENST00000363693 105 ntBASIC0.86□□□□□ -2.27
TRIM39Q9HCM9 Y_RNA.508-201ENST00000384502 114 ntBASIC0.86□□□□□ -2.27
TRIM39Q9HCM9 MIR520E-201ENST00000384867 87 ntBASIC0.86□□□□□ -2.27
TRIM39Q9HCM9 MIR548L-201ENST00000408303 86 ntBASIC0.86□□□□□ -2.27
TRIM39Q9HCM9 RNU7-104P-201ENST00000459398 79 ntBASIC0.86□□□□□ -2.27
TRIM39Q9HCM9 RNU6-162P-201ENST00000516228 103 ntBASIC0.86□□□□□ -2.27
TRIM39Q9HCM9 RNA5SP94-201ENST00000516917 108 ntBASIC0.86□□□□□ -2.27
TRIM39Q9HCM9 SCARNA16.5-201ENST00000517114 183 ntBASIC0.86□□□□□ -2.27
TRIM39Q9HCM9 RNA5SP47-201ENST00000517230 109 ntBASIC0.86□□□□□ -2.27
TRIM39Q9HCM9 MIR4653-201ENST00000585107 83 ntBASIC0.86□□□□□ -2.27
TRIM39Q9HCM9 MALAT1.1-201ENST00000618249 95 ntBASIC0.86□□□□□ -2.27
TRIM39Q9HCM9 RPS29P1-201ENST00000465274 159 ntBASIC0.85□□□□□ -2.27
TRIM39Q9HCM9 RNA5SP220-201ENST00000516298 104 ntBASIC0.85□□□□□ -2.27
TRIM39Q9HCM9 TRDV1-202ENST00000621643 102 ntBASIC0.85□□□□□ -2.27
TRIM39Q9HCM9 AC067863.3-201ENST00000624172 122 ntBASIC0.85□□□□□ -2.27
TRIM39Q9HCM9 RNA5SP403-201ENST00000363598 108 ntBASIC0.84□□□□□ -2.27
TRIM39Q9HCM9 Y_RNA.355-201ENST00000365462 98 ntBASIC0.84□□□□□ -2.27
TRIM39Q9HCM9 MIR146A-201ENST00000385201 99 ntBASIC0.84□□□□□ -2.27
TRIM39Q9HCM9 RNU6-519P-201ENST00000410590 108 ntBASIC0.84□□□□□ -2.27
TRIM39Q9HCM9 RNU6-65P-201ENST00000516332 98 ntBASIC0.84□□□□□ -2.27
TRIM39Q9HCM9 RNU7-13P-201ENST00000516413 62 ntBASIC0.84□□□□□ -2.27
TRIM39Q9HCM9 MIR4698-201ENST00000577795 80 ntBASIC0.84□□□□□ -2.27
TRIM39Q9HCM9 AL590095.2-201ENST00000604136 117 ntBASIC0.84□□□□□ -2.27
TRIM39Q9HCM9 MIR6734-201ENST00000621166 68 ntBASIC0.84□□□□□ -2.27
TRIM39Q9HCM9 Y_RNA.283-201ENST00000364798 112 ntBASIC0.83□□□□□ -2.28
TRIM39Q9HCM9 SNORD115-44-201ENST00000365391 82 ntBASIC0.83□□□□□ -2.28
TRIM39Q9HCM9 AC092634.7-201ENST00000621022 103 ntBASIC0.83□□□□□ -2.28
TRIM39Q9HCM9 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.82□□□□□ -2.28
TRIM39Q9HCM9 Y_RNA.118-201ENST00000363300 101 ntBASIC0.82□□□□□ -2.28
TRIM39Q9HCM9 Y_RNA.290-201ENST00000364879 114 ntBASIC0.82□□□□□ -2.28
TRIM39Q9HCM9 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.82□□□□□ -2.28
TRIM39Q9HCM9 snoU13.11-201ENST00000459219 104 ntBASIC0.82□□□□□ -2.28
TRIM39Q9HCM9 RNA5SP227-201ENST00000516184 113 ntBASIC0.82□□□□□ -2.28
TRIM39Q9HCM9 RNU6-1265P-201ENST00000516342 103 ntBASIC0.82□□□□□ -2.28
TRIM39Q9HCM9 RNU7-161P-201ENST00000517289 62 ntBASIC0.82□□□□□ -2.28
TRIM39Q9HCM9 MIR4536-1-201ENST00000583537 88 ntBASIC0.82□□□□□ -2.28
TRIM39Q9HCM9 RNU6-957P-201ENST00000363652 99 ntBASIC0.81□□□□□ -2.28
TRIM39Q9HCM9 RNU6-42P-201ENST00000384165 107 ntBASIC0.81□□□□□ -2.28
TRIM39Q9HCM9 RNU6-351P-201ENST00000516097 100 ntBASIC0.81□□□□□ -2.28
TRIM39Q9HCM9 MIR6788-201ENST00000618842 66 ntBASIC0.81□□□□□ -2.28
TRIM39Q9HCM9 SNORD114-2-201ENST00000363953 78 ntBASIC0.8□□□□□ -2.28
TRIM39Q9HCM9 SNORD71-201ENST00000411292 86 ntBASIC0.8□□□□□ -2.28
TRIM39Q9HCM9 snoU13.18-201ENST00000459483 104 ntBASIC0.8□□□□□ -2.28
TRIM39Q9HCM9 RNA5SP268-201ENST00000516828 124 ntBASIC0.8□□□□□ -2.28
TRIM39Q9HCM9 MIR151B-201ENST00000584249 96 ntBASIC0.8□□□□□ -2.28
TRIM39Q9HCM9 RNY1P8-201ENST00000383970 114 ntBASIC0.79□□□□□ -2.28
TRIM39Q9HCM9 RNY4P30-201ENST00000410216 95 ntBASIC0.79□□□□□ -2.28
TRIM39Q9HCM9 Y_RNA.596-201ENST00000410462 109 ntBASIC0.79□□□□□ -2.28
TRIM39Q9HCM9 RNU7-74P-201ENST00000459104 62 ntBASIC0.79□□□□□ -2.28
TRIM39Q9HCM9 MIR6828-201ENST00000636181 60 ntBASIC0.79□□□□□ -2.28
TRIM39Q9HCM9 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
TRIM39Q9HCM9 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.78□□□□□ -2.28
TRIM39Q9HCM9 MIR548J-201ENST00000408833 112 ntBASIC0.78□□□□□ -2.28
TRIM39Q9HCM9 AL606490.4-201ENST00000423117 127 ntBASIC0.77□□□□□ -2.29
TRIM39Q9HCM9 AL161932.1-201ENST00000437408 146 ntBASIC0.77□□□□□ -2.29
TRIM39Q9HCM9 RNU6-1223P-201ENST00000517124 104 ntBASIC0.77□□□□□ -2.29
TRIM39Q9HCM9 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.77□□□□□ -2.29
TRIM39Q9HCM9 Y_RNA.190-201ENST00000363964 101 ntBASIC0.76□□□□□ -2.29
TRIM39Q9HCM9 RNU6-716P-201ENST00000365621 103 ntBASIC0.76□□□□□ -2.29
TRIM39Q9HCM9 SNORA8.2-201ENST00000384372 139 ntBASIC0.76□□□□□ -2.29
TRIM39Q9HCM9 MIR548U-201ENST00000390728 81 ntBASIC0.76□□□□□ -2.29
TRIM39Q9HCM9 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.76□□□□□ -2.29
TRIM39Q9HCM9 Y_RNA.609-201ENST00000410669 89 ntBASIC0.76□□□□□ -2.29
TRIM39Q9HCM9 SNORA40.8-201ENST00000411034 126 ntBASIC0.76□□□□□ -2.29
TRIM39Q9HCM9 CYP3A137P-201ENST00000562436 69 ntBASIC0.76□□□□□ -2.29
TRIM39Q9HCM9 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.76□□□□□ -2.29
TRIM39Q9HCM9 MIR6866-201ENST00000638146 69 ntBASIC0.76□□□□□ -2.29
TRIM39Q9HCM9 SNORA36.1-201ENST00000363424 132 ntBASIC0.75□□□□□ -2.29
TRIM39Q9HCM9 RNA5SP517-201ENST00000364724 117 ntBASIC0.75□□□□□ -2.29
TRIM39Q9HCM9 MIR488-201ENST00000365739 83 ntBASIC0.75□□□□□ -2.29
TRIM39Q9HCM9 SNORD101-201ENST00000384027 73 ntBASIC0.75□□□□□ -2.29
TRIM39Q9HCM9 SNORD4B-201ENST00000459083 72 ntBASIC0.75□□□□□ -2.29
TRIM39Q9HCM9 RNU6-1057P-201ENST00000517162 102 ntBASIC0.75□□□□□ -2.29
TRIM39Q9HCM9 AC018659.1-201ENST00000551083 169 ntBASIC0.75□□□□□ -2.29
TRIM39Q9HCM9 Y_RNA.239-201ENST00000364444 113 ntBASIC0.74□□□□□ -2.29
TRIM39Q9HCM9 RNU6-726P-201ENST00000364680 107 ntBASIC0.74□□□□□ -2.29
TRIM39Q9HCM9 RNU6-1131P-201ENST00000364955 107 ntBASIC0.74□□□□□ -2.29
TRIM39Q9HCM9 SNORD41.1-201ENST00000391000 69 ntBASIC0.74□□□□□ -2.29
TRIM39Q9HCM9 RNU7-85P-201ENST00000458851 63 ntBASIC0.74□□□□□ -2.29
TRIM39Q9HCM9 MIR7111-201ENST00000619751 72 ntBASIC0.74□□□□□ -2.29
TRIM39Q9HCM9 U6.100-201ENST00000636230 99 ntBASIC0.74□□□□□ -2.29
TRIM39Q9HCM9 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.74□□□□□ -2.29
TRIM39Q9HCM9 SNORD116-22-201ENST00000384430 92 ntBASIC0.73□□□□□ -2.29
TRIM39Q9HCM9 RNA5SP121-201ENST00000516537 101 ntBASIC0.73□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 184.2 ms