Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RNU6-32P-201ENST00000383948 107 ntBASIC1.01□□□□□ -2.25
TRAIPQ9BWF2 RNU6-13P-201ENST00000384248 107 ntBASIC1.01□□□□□ -2.25
TRAIPQ9BWF2 Y_RNA.467-201ENST00000384297 102 ntBASIC1.01□□□□□ -2.25
TRAIPQ9BWF2 RNU6-12P-201ENST00000384604 107 ntBASIC1.01□□□□□ -2.25
TRAIPQ9BWF2 RNU6-41P-201ENST00000384741 107 ntBASIC1.01□□□□□ -2.25
TRAIPQ9BWF2 RNU6-466P-201ENST00000391224 103 ntBASIC1.01□□□□□ -2.25
TRAIPQ9BWF2 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.01□□□□□ -2.25
TRAIPQ9BWF2 AL606490.4-201ENST00000423117 127 ntBASIC1.01□□□□□ -2.25
TRAIPQ9BWF2 RNU7-104P-201ENST00000459398 79 ntBASIC1.01□□□□□ -2.25
TRAIPQ9BWF2 RNA5SP227-201ENST00000516184 113 ntBASIC1.01□□□□□ -2.25
TRAIPQ9BWF2 RNY1P8-201ENST00000383970 114 ntBASIC1□□□□□ -2.25
TRAIPQ9BWF2 RNU6-109P-201ENST00000516364 107 ntBASIC1□□□□□ -2.25
TRAIPQ9BWF2 RNU6-184P-201ENST00000516514 107 ntBASIC1□□□□□ -2.25
TRAIPQ9BWF2 RNA5SP47-201ENST00000517230 109 ntBASIC1□□□□□ -2.25
TRAIPQ9BWF2 AC103810.7-201ENST00000607821 91 ntBASIC1□□□□□ -2.25
TRAIPQ9BWF2 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1□□□□□ -2.25
TRAIPQ9BWF2 AC067863.3-201ENST00000624172 122 ntBASIC1□□□□□ -2.25
TRAIPQ9BWF2 SNORD36A-201ENST00000362874 73 ntBASIC0.99□□□□□ -2.25
TRAIPQ9BWF2 MIR4777-201ENST00000583710 86 ntBASIC0.99□□□□□ -2.25
TRAIPQ9BWF2 RNA5SP121-201ENST00000516537 101 ntBASIC0.98□□□□□ -2.25
TRAIPQ9BWF2 RNA5SP268-201ENST00000516828 124 ntBASIC0.98□□□□□ -2.25
TRAIPQ9BWF2 AC018659.1-201ENST00000551083 169 ntBASIC0.98□□□□□ -2.25
TRAIPQ9BWF2 Y_RNA.81-201ENST00000362997 102 ntBASIC0.97□□□□□ -2.25
TRAIPQ9BWF2 RNU6-644P-201ENST00000391155 98 ntBASIC0.97□□□□□ -2.25
TRAIPQ9BWF2 RNU6-887P-201ENST00000410660 100 ntBASIC0.97□□□□□ -2.25
TRAIPQ9BWF2 CYP3A137P-201ENST00000562436 69 ntBASIC0.97□□□□□ -2.25
TRAIPQ9BWF2 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.96□□□□□ -2.26
TRAIPQ9BWF2 RNU6-147P-201ENST00000383983 107 ntBASIC0.96□□□□□ -2.26
TRAIPQ9BWF2 SNORA40.8-201ENST00000411034 126 ntBASIC0.96□□□□□ -2.26
TRAIPQ9BWF2 SNORA40.13-201ENST00000516379 120 ntBASIC0.96□□□□□ -2.26
TRAIPQ9BWF2 RNU7-13P-201ENST00000516413 62 ntBASIC0.96□□□□□ -2.26
TRAIPQ9BWF2 RNU6-537P-201ENST00000517277 103 ntBASIC0.96□□□□□ -2.26
TRAIPQ9BWF2 MIR6734-201ENST00000621166 68 ntBASIC0.96□□□□□ -2.26
TRAIPQ9BWF2 Y_RNA.540-201ENST00000384638 111 ntBASIC0.95□□□□□ -2.26
TRAIPQ9BWF2 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
TRAIPQ9BWF2 MIR548Z-201ENST00000584743 97 ntBASIC0.94□□□□□ -2.26
TRAIPQ9BWF2 AC025521.1-201ENST00000621624 286 ntBASIC0.94□□□□□ -2.26
TRAIPQ9BWF2 RNA5SP403-201ENST00000363598 108 ntBASIC0.93□□□□□ -2.26
TRAIPQ9BWF2 RNA5SP517-201ENST00000364724 117 ntBASIC0.93□□□□□ -2.26
TRAIPQ9BWF2 RNU6-945P-201ENST00000383947 107 ntBASIC0.93□□□□□ -2.26
TRAIPQ9BWF2 SNORA8.2-201ENST00000384372 139 ntBASIC0.93□□□□□ -2.26
TRAIPQ9BWF2 Y_RNA.495-201ENST00000384435 112 ntBASIC0.93□□□□□ -2.26
TRAIPQ9BWF2 MIR146A-201ENST00000385201 99 ntBASIC0.93□□□□□ -2.26
TRAIPQ9BWF2 RNU7-61P-201ENST00000515897 61 ntBASIC0.93□□□□□ -2.26
TRAIPQ9BWF2 RNU7-161P-201ENST00000517289 62 ntBASIC0.93□□□□□ -2.26
TRAIPQ9BWF2 AL513043.2-201ENST00000573941 143 ntBASIC0.93□□□□□ -2.26
TRAIPQ9BWF2 MIR5000-201ENST00000577717 103 ntBASIC0.93□□□□□ -2.26
TRAIPQ9BWF2 RNU6-716P-201ENST00000365621 103 ntBASIC0.92□□□□□ -2.26
TRAIPQ9BWF2 Y_RNA.648-201ENST00000459455 110 ntBASIC0.92□□□□□ -2.26
TRAIPQ9BWF2 RNU4-54P-201ENST00000516428 129 ntBASIC0.92□□□□□ -2.26
TRAIPQ9BWF2 RNU6-158P-201ENST00000517104 100 ntBASIC0.92□□□□□ -2.26
TRAIPQ9BWF2 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.91□□□□□ -2.26
TRAIPQ9BWF2 TRDV1-202ENST00000621643 102 ntBASIC0.91□□□□□ -2.26
TRAIPQ9BWF2 MIR6828-201ENST00000636181 60 ntBASIC0.91□□□□□ -2.26
TRAIPQ9BWF2 SNORD115-44-201ENST00000365391 82 ntBASIC0.9□□□□□ -2.27
TRAIPQ9BWF2 MTATP8P2-201ENST00000435212 202 ntBASIC0.9□□□□□ -2.27
TRAIPQ9BWF2 RNU7-74P-201ENST00000459104 62 ntBASIC0.9□□□□□ -2.27
TRAIPQ9BWF2 RNU6-65P-201ENST00000516332 98 ntBASIC0.9□□□□□ -2.27
TRAIPQ9BWF2 MIR4698-201ENST00000577795 80 ntBASIC0.9□□□□□ -2.27
TRAIPQ9BWF2 SNORA36.1-201ENST00000363424 132 ntBASIC0.89□□□□□ -2.27
TRAIPQ9BWF2 SNORD116-10-201ENST00000363791 102 ntBASIC0.89□□□□□ -2.27
TRAIPQ9BWF2 Y_RNA.466-201ENST00000384294 113 ntBASIC0.89□□□□□ -2.27
TRAIPQ9BWF2 RNU6-351P-201ENST00000516097 100 ntBASIC0.89□□□□□ -2.27
TRAIPQ9BWF2 RN7SKP12-201ENST00000516275 143 ntBASIC0.89□□□□□ -2.27
TRAIPQ9BWF2 AP001318.4-201ENST00000616637 121 ntBASIC0.89□□□□□ -2.27
TRAIPQ9BWF2 MIR6515-201ENST00000619843 57 ntBASIC0.89□□□□□ -2.27
TRAIPQ9BWF2 SNORD114-2-201ENST00000363953 78 ntBASIC0.88□□□□□ -2.27
TRAIPQ9BWF2 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.88□□□□□ -2.27
TRAIPQ9BWF2 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
TRAIPQ9BWF2 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.87□□□□□ -2.27
TRAIPQ9BWF2 RNU6-957P-201ENST00000363652 99 ntBASIC0.87□□□□□ -2.27
TRAIPQ9BWF2 SNORD58A-201ENST00000383875 65 ntBASIC0.87□□□□□ -2.27
TRAIPQ9BWF2 MIR518A1-201ENST00000385068 85 ntBASIC0.87□□□□□ -2.27
TRAIPQ9BWF2 MIR4536-1-201ENST00000583537 88 ntBASIC0.87□□□□□ -2.27
TRAIPQ9BWF2 SNORA25.18-201ENST00000607153 114 ntBASIC0.87□□□□□ -2.27
TRAIPQ9BWF2 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.87□□□□□ -2.27
TRAIPQ9BWF2 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.87□□□□□ -2.27
TRAIPQ9BWF2 Y_RNA.677-201ENST00000516401 85 ntBASIC0.86□□□□□ -2.27
TRAIPQ9BWF2 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.86□□□□□ -2.27
TRAIPQ9BWF2 RNU6-153P-201ENST00000364422 104 ntBASIC0.85□□□□□ -2.27
TRAIPQ9BWF2 Y_RNA.283-201ENST00000364798 112 ntBASIC0.85□□□□□ -2.27
TRAIPQ9BWF2 Y_RNA.596-201ENST00000410462 109 ntBASIC0.85□□□□□ -2.27
TRAIPQ9BWF2 RNU6-519P-201ENST00000410590 108 ntBASIC0.85□□□□□ -2.27
TRAIPQ9BWF2 snoU13.11-201ENST00000459219 104 ntBASIC0.85□□□□□ -2.27
TRAIPQ9BWF2 PVT1_3.1-201ENST00000620853 95 ntBASIC0.85□□□□□ -2.27
TRAIPQ9BWF2 RNU6-1265P-201ENST00000516342 103 ntBASIC0.84□□□□□ -2.27
TRAIPQ9BWF2 SNORD118-201ENST00000363593 134 ntBASIC0.83□□□□□ -2.28
TRAIPQ9BWF2 RNU6-726P-201ENST00000364680 107 ntBASIC0.83□□□□□ -2.28
TRAIPQ9BWF2 MIR598-201ENST00000384868 97 ntBASIC0.83□□□□□ -2.28
TRAIPQ9BWF2 RNU6-1057P-201ENST00000517162 102 ntBASIC0.83□□□□□ -2.28
TRAIPQ9BWF2 MIR7107-201ENST00000611489 80 ntBASIC0.83□□□□□ -2.28
TRAIPQ9BWF2 U7.3-201ENST00000616123 62 ntBASIC0.83□□□□□ -2.28
TRAIPQ9BWF2 AL161932.1-201ENST00000437408 146 ntBASIC0.82□□□□□ -2.28
TRAIPQ9BWF2 RNU6-168P-201ENST00000516189 101 ntBASIC0.82□□□□□ -2.28
TRAIPQ9BWF2 RNU6-162P-201ENST00000516228 103 ntBASIC0.82□□□□□ -2.28
TRAIPQ9BWF2 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.81□□□□□ -2.28
TRAIPQ9BWF2 MIR4714-201ENST00000580728 77 ntBASIC0.81□□□□□ -2.28
TRAIPQ9BWF2 MIR6835-201ENST00000621552 64 ntBASIC0.81□□□□□ -2.28
TRAIPQ9BWF2 SNORD41.1-201ENST00000391000 69 ntBASIC0.8□□□□□ -2.28
TRAIPQ9BWF2 RNU6-509P-201ENST00000363519 107 ntBASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 315.7 ms