Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL162376.1-201ENST00000624117 175 ntBASIC0.23□□□□□ -2.37
ZNF540Q8NDQ6 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.23□□□□□ -2.37
ZNF540Q8NDQ6 AC132825.6-201ENST00000638861 357 ntBASIC0.23□□□□□ -2.37
ZNF540Q8NDQ6 AC091304.10-201ENST00000641554 121 ntBASIC0.23□□□□□ -2.37
ZNF540Q8NDQ6 SNORD36A-201ENST00000362874 73 ntBASIC0.22□□□□□ -2.37
ZNF540Q8NDQ6 RNU6-832P-201ENST00000363319 107 ntBASIC0.22□□□□□ -2.37
ZNF540Q8NDQ6 RNU6-1099P-201ENST00000363533 107 ntBASIC0.22□□□□□ -2.37
ZNF540Q8NDQ6 Y_RNA.221-201ENST00000364248 96 ntBASIC0.22□□□□□ -2.37
ZNF540Q8NDQ6 RNU6-1144P-201ENST00000384247 104 ntBASIC0.22□□□□□ -2.37
ZNF540Q8NDQ6 Y_RNA.507-201ENST00000384500 99 ntBASIC0.22□□□□□ -2.37
ZNF540Q8NDQ6 MIR548A3-201ENST00000385297 97 ntBASIC0.22□□□□□ -2.37
ZNF540Q8NDQ6 RNA5SP227-201ENST00000516184 113 ntBASIC0.22□□□□□ -2.37
ZNF540Q8NDQ6 RNU6-1232P-201ENST00000516299 86 ntBASIC0.22□□□□□ -2.37
ZNF540Q8NDQ6 RNU6-406P-201ENST00000516470 107 ntBASIC0.22□□□□□ -2.37
ZNF540Q8NDQ6 MIR548AG2-201ENST00000581228 64 ntBASIC0.22□□□□□ -2.37
ZNF540Q8NDQ6 MIR4514-201ENST00000581410 57 ntBASIC0.22□□□□□ -2.37
ZNF540Q8NDQ6 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.22□□□□□ -2.37
ZNF540Q8NDQ6 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.22□□□□□ -2.37
ZNF540Q8NDQ6 AL512310.12-203ENST00000640543 90 ntBASIC0.22□□□□□ -2.37
ZNF540Q8NDQ6 RNY3P2-201ENST00000362918 102 ntBASIC0.21□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-1229P-201ENST00000364295 107 ntBASIC0.21□□□□□ -2.38
ZNF540Q8NDQ6 Y_RNA.309-201ENST00000365046 111 ntBASIC0.21□□□□□ -2.38
ZNF540Q8NDQ6 SNORD116-21-201ENST00000384507 92 ntBASIC0.21□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-880P-201ENST00000384526 107 ntBASIC0.21□□□□□ -2.38
ZNF540Q8NDQ6 MIR1197-201ENST00000408818 88 ntBASIC0.21□□□□□ -2.38
ZNF540Q8NDQ6 SNORA19.1-201ENST00000410656 129 ntBASIC0.21□□□□□ -2.38
ZNF540Q8NDQ6 AL161932.1-201ENST00000437408 146 ntBASIC0.21□□□□□ -2.38
ZNF540Q8NDQ6 RNU7-104P-201ENST00000459398 79 ntBASIC0.21□□□□□ -2.38
ZNF540Q8NDQ6 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.21□□□□□ -2.38
ZNF540Q8NDQ6 Y_RNA.809-201ENST00000516058 95 ntBASIC0.21□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-479P-201ENST00000516348 105 ntBASIC0.21□□□□□ -2.38
ZNF540Q8NDQ6 MIR3920-201ENST00000581751 86 ntBASIC0.21□□□□□ -2.38
ZNF540Q8NDQ6 RNU7-10P-201ENST00000607194 63 ntBASIC0.21□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-1244P-201ENST00000363614 108 ntBASIC0.2□□□□□ -2.38
ZNF540Q8NDQ6 SNORA2A-201ENST00000383885 135 ntBASIC0.2□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-815P-201ENST00000384080 113 ntBASIC0.2□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-524P-201ENST00000384270 107 ntBASIC0.2□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-476P-201ENST00000384726 107 ntBASIC0.2□□□□□ -2.38
ZNF540Q8NDQ6 RNA5SP63-201ENST00000391225 112 ntBASIC0.2□□□□□ -2.38
ZNF540Q8NDQ6 RNU2-59P-201ENST00000410482 191 ntBASIC0.2□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-589P-201ENST00000516485 107 ntBASIC0.2□□□□□ -2.38
ZNF540Q8NDQ6 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.2□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-537P-201ENST00000517277 103 ntBASIC0.2□□□□□ -2.38
ZNF540Q8NDQ6 MIR548Z-201ENST00000584743 97 ntBASIC0.2□□□□□ -2.38
ZNF540Q8NDQ6 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.2□□□□□ -2.38
ZNF540Q8NDQ6 SNORA70.25-201ENST00000612741 95 ntBASIC0.2□□□□□ -2.38
ZNF540Q8NDQ6 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.2□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-1014P-201ENST00000383940 103 ntBASIC0.19□□□□□ -2.38
ZNF540Q8NDQ6 SNORD38.2-201ENST00000384470 69 ntBASIC0.19□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-1117P-201ENST00000384525 104 ntBASIC0.19□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-269P-201ENST00000391077 97 ntBASIC0.19□□□□□ -2.38
ZNF540Q8NDQ6 SPINT5P-201ENST00000448174 155 ntBASIC0.19□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-90P-201ENST00000606352 106 ntBASIC0.19□□□□□ -2.38
ZNF540Q8NDQ6 MIR6129-201ENST00000616087 109 ntBASIC0.19□□□□□ -2.38
ZNF540Q8NDQ6 Y_RNA.57-201ENST00000362806 113 ntBASIC0.18□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-1107P-201ENST00000364817 104 ntBASIC0.18□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-1254P-201ENST00000391266 104 ntBASIC0.18□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-1064P-201ENST00000410626 104 ntBASIC0.18□□□□□ -2.38
ZNF540Q8NDQ6 AC109327.2-201ENST00000448339 378 ntBASIC0.18□□□□□ -2.38
ZNF540Q8NDQ6 MTND5P40-201ENST00000559945 246 ntBASIC0.18□□□□□ -2.38
ZNF540Q8NDQ6 MIR4777-201ENST00000583710 86 ntBASIC0.18□□□□□ -2.38
ZNF540Q8NDQ6 MTRNR2L2-201ENST00000604882 87 ntBASIC0.18□□□□□ -2.38
ZNF540Q8NDQ6 uc_338.28-201ENST00000612082 187 ntBASIC0.18□□□□□ -2.38
ZNF540Q8NDQ6 U6.100-201ENST00000636230 99 ntBASIC0.18□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-957P-201ENST00000363652 99 ntBASIC0.17□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-106P-201ENST00000384405 107 ntBASIC0.17□□□□□ -2.38
ZNF540Q8NDQ6 SNORA19-201ENST00000384737 128 ntBASIC0.17□□□□□ -2.38
ZNF540Q8NDQ6 MIR181B2-201ENST00000385004 89 ntBASIC0.17□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-1154P-201ENST00000391001 104 ntBASIC0.17□□□□□ -2.38
ZNF540Q8NDQ6 MIR548H2-201ENST00000408874 88 ntBASIC0.17□□□□□ -2.38
ZNF540Q8NDQ6 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.17□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-904P-201ENST00000516206 101 ntBASIC0.17□□□□□ -2.38
ZNF540Q8NDQ6 AC025521.1-201ENST00000621624 286 ntBASIC0.17□□□□□ -2.38
ZNF540Q8NDQ6 AC067863.3-201ENST00000624172 122 ntBASIC0.17□□□□□ -2.38
ZNF540Q8NDQ6 Y_RNA.78-201ENST00000362970 110 ntBASIC0.16□□□□□ -2.38
ZNF540Q8NDQ6 Y_RNA.423-201ENST00000384057 113 ntBASIC0.16□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-554P-201ENST00000410466 106 ntBASIC0.16□□□□□ -2.38
ZNF540Q8NDQ6 RNU2-51P-201ENST00000410708 197 ntBASIC0.16□□□□□ -2.38
ZNF540Q8NDQ6 RNU4-61P-201ENST00000411243 107 ntBASIC0.16□□□□□ -2.38
ZNF540Q8NDQ6 AC093423.1-201ENST00000440817 142 ntBASIC0.16□□□□□ -2.38
ZNF540Q8NDQ6 snoU13.11-201ENST00000459219 104 ntBASIC0.16□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-75P-201ENST00000515944 104 ntBASIC0.16□□□□□ -2.38
ZNF540Q8NDQ6 AC069113.3-201ENST00000521019 150 ntBASIC0.16□□□□□ -2.38
ZNF540Q8NDQ6 AC012531.4-201ENST00000616509 177 ntBASIC0.16□□□□□ -2.38
ZNF540Q8NDQ6 TRDV1-202ENST00000621643 102 ntBASIC0.16□□□□□ -2.38
ZNF540Q8NDQ6 RNU6-834P-201ENST00000362367 110 ntBASIC0.15□□□□□ -2.39
ZNF540Q8NDQ6 RNA5SP257-201ENST00000363023 116 ntBASIC0.15□□□□□ -2.39
ZNF540Q8NDQ6 Y_RNA.95-201ENST00000363079 95 ntBASIC0.15□□□□□ -2.39
ZNF540Q8NDQ6 RNA5SP62-201ENST00000363457 110 ntBASIC0.15□□□□□ -2.39
ZNF540Q8NDQ6 Y_RNA.467-201ENST00000384297 102 ntBASIC0.15□□□□□ -2.39
ZNF540Q8NDQ6 MIR519E-201ENST00000385075 84 ntBASIC0.15□□□□□ -2.39
ZNF540Q8NDQ6 MIR501-201ENST00000390204 84 ntBASIC0.15□□□□□ -2.39
ZNF540Q8NDQ6 RNA5SP484-201ENST00000458857 111 ntBASIC0.15□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-313P-201ENST00000516317 112 ntBASIC0.15□□□□□ -2.39
ZNF540Q8NDQ6 AC141557.1-201ENST00000540982 400 ntBASIC0.15□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-86P-201ENST00000606534 107 ntBASIC0.15□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-161P-201ENST00000363051 106 ntBASIC0.14□□□□□ -2.39
ZNF540Q8NDQ6 Y_RNA.163-201ENST00000363702 113 ntBASIC0.14□□□□□ -2.39
ZNF540Q8NDQ6 RNU6-127P-201ENST00000390897 107 ntBASIC0.14□□□□□ -2.39
ZNF540Q8NDQ6 AL606753.1-201ENST00000427435 87 ntBASIC0.14□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 317.2 ms