Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 RNA5SP436-201ENST00000516020 115 ntBASIC1.17□□□□□ -2.22
SLC44A3Q8N4M1 RNA5SP395-201ENST00000516567 118 ntBASIC1.17□□□□□ -2.22
SLC44A3Q8N4M1 RNU6-448P-201ENST00000517052 107 ntBASIC1.17□□□□□ -2.22
SLC44A3Q8N4M1 AC019288.1-201ENST00000557918 224 ntBASIC1.17□□□□□ -2.22
SLC44A3Q8N4M1 MIR4804-201ENST00000581683 73 ntBASIC1.17□□□□□ -2.22
SLC44A3Q8N4M1 RN7SL793P-201ENST00000583259 296 ntBASIC1.17□□□□□ -2.22
SLC44A3Q8N4M1 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.17□□□□□ -2.22
SLC44A3Q8N4M1 AC027335.2-201ENST00000624030 375 ntBASIC1.17□□□□□ -2.22
SLC44A3Q8N4M1 SNORA25-201ENST00000384384 134 ntBASIC1.16□□□□□ -2.22
SLC44A3Q8N4M1 SNORD78.1-201ENST00000390866 65 ntBASIC1.16□□□□□ -2.22
SLC44A3Q8N4M1 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.16□□□□□ -2.22
SLC44A3Q8N4M1 MIR1827-201ENST00000408549 66 ntBASIC1.16□□□□□ -2.22
SLC44A3Q8N4M1 AC092628.1-201ENST00000436250 252 ntBASIC1.16□□□□□ -2.22
SLC44A3Q8N4M1 RNU7-156P-201ENST00000517214 74 ntBASIC1.16□□□□□ -2.22
SLC44A3Q8N4M1 MIR4666B-201ENST00000578142 81 ntBASIC1.16□□□□□ -2.22
SLC44A3Q8N4M1 MIR548H5-201ENST00000580314 60 ntBASIC1.16□□□□□ -2.22
SLC44A3Q8N4M1 AC008608.1-201ENST00000603910 127 ntBASIC1.16□□□□□ -2.22
SLC44A3Q8N4M1 Y_RNA.283-201ENST00000364798 112 ntBASIC1.15□□□□□ -2.23
SLC44A3Q8N4M1 RNU6-291P-201ENST00000384720 107 ntBASIC1.15□□□□□ -2.23
SLC44A3Q8N4M1 MIR938-201ENST00000401216 83 ntBASIC1.15□□□□□ -2.23
SLC44A3Q8N4M1 Y_RNA.611-201ENST00000410682 108 ntBASIC1.15□□□□□ -2.23
SLC44A3Q8N4M1 RNU7-56P-201ENST00000458744 62 ntBASIC1.15□□□□□ -2.23
SLC44A3Q8N4M1 RNU7-195P-201ENST00000458793 62 ntBASIC1.15□□□□□ -2.23
SLC44A3Q8N4M1 RNU7-102P-201ENST00000458948 62 ntBASIC1.15□□□□□ -2.23
SLC44A3Q8N4M1 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
SLC44A3Q8N4M1 MIR101-2-201ENST00000362195 79 ntBASIC1.14□□□□□ -2.23
SLC44A3Q8N4M1 RNU6-1260P-201ENST00000362944 107 ntBASIC1.14□□□□□ -2.23
SLC44A3Q8N4M1 RNU6-524P-201ENST00000384270 107 ntBASIC1.14□□□□□ -2.23
SLC44A3Q8N4M1 RNU6-242P-201ENST00000384359 107 ntBASIC1.14□□□□□ -2.23
SLC44A3Q8N4M1 MIR19B1-201ENST00000384829 87 ntBASIC1.14□□□□□ -2.23
SLC44A3Q8N4M1 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC1.14□□□□□ -2.23
SLC44A3Q8N4M1 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.14□□□□□ -2.23
SLC44A3Q8N4M1 RNU6-243P-201ENST00000391140 107 ntBASIC1.14□□□□□ -2.23
SLC44A3Q8N4M1 RNU6-994P-201ENST00000410507 111 ntBASIC1.14□□□□□ -2.23
SLC44A3Q8N4M1 Y_RNA.685-201ENST00000516532 108 ntBASIC1.14□□□□□ -2.23
SLC44A3Q8N4M1 RNU7-10P-201ENST00000607194 63 ntBASIC1.14□□□□□ -2.23
SLC44A3Q8N4M1 MIR3202-2-201ENST00000635980 79 ntBASIC1.14□□□□□ -2.23
SLC44A3Q8N4M1 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
SLC44A3Q8N4M1 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.13□□□□□ -2.23
SLC44A3Q8N4M1 MIR373-201ENST00000362273 69 ntBASIC1.13□□□□□ -2.23
SLC44A3Q8N4M1 Y_RNA.426-201ENST00000384068 113 ntBASIC1.13□□□□□ -2.23
SLC44A3Q8N4M1 RNU6-1124P-201ENST00000384169 107 ntBASIC1.13□□□□□ -2.23
SLC44A3Q8N4M1 MIR635-201ENST00000384830 98 ntBASIC1.13□□□□□ -2.23
SLC44A3Q8N4M1 MIR519C-201ENST00000385053 87 ntBASIC1.13□□□□□ -2.23
SLC44A3Q8N4M1 MIR216A-201ENST00000385063 110 ntBASIC1.13□□□□□ -2.23
SLC44A3Q8N4M1 AC097635.1-201ENST00000450678 155 ntBASIC1.13□□□□□ -2.23
SLC44A3Q8N4M1 Y_RNA.697-201ENST00000516776 113 ntBASIC1.13□□□□□ -2.23
SLC44A3Q8N4M1 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
SLC44A3Q8N4M1 Y_RNA.30-201ENST00000362572 97 ntBASIC1.12□□□□□ -2.23
SLC44A3Q8N4M1 RNU6-957P-201ENST00000363652 99 ntBASIC1.12□□□□□ -2.23
SLC44A3Q8N4M1 Y_RNA.178-201ENST00000363832 102 ntBASIC1.12□□□□□ -2.23
SLC44A3Q8N4M1 RNA5SP245-201ENST00000364239 121 ntBASIC1.12□□□□□ -2.23
SLC44A3Q8N4M1 AL606490.4-201ENST00000423117 127 ntBASIC1.12□□□□□ -2.23
SLC44A3Q8N4M1 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.12□□□□□ -2.23
SLC44A3Q8N4M1 RNU6-364P-201ENST00000384387 107 ntBASIC1.11□□□□□ -2.23
SLC44A3Q8N4M1 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.11□□□□□ -2.23
SLC44A3Q8N4M1 Y_RNA.607-201ENST00000410597 98 ntBASIC1.11□□□□□ -2.23
SLC44A3Q8N4M1 RNU6-977P-201ENST00000516411 103 ntBASIC1.11□□□□□ -2.23
SLC44A3Q8N4M1 RNU7-153P-201ENST00000516455 62 ntBASIC1.11□□□□□ -2.23
SLC44A3Q8N4M1 AC140658.3-201ENST00000567603 271 ntBASIC1.11□□□□□ -2.23
SLC44A3Q8N4M1 MIR5000-201ENST00000577717 103 ntBASIC1.11□□□□□ -2.23
SLC44A3Q8N4M1 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.11□□□□□ -2.23
SLC44A3Q8N4M1 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
SLC44A3Q8N4M1 MIR1-1-201ENST00000362147 71 ntBASIC1.1□□□□□ -2.23
SLC44A3Q8N4M1 RNU6-132P-201ENST00000383863 107 ntBASIC1.1□□□□□ -2.23
SLC44A3Q8N4M1 MIR100-201ENST00000385259 80 ntBASIC1.1□□□□□ -2.23
SLC44A3Q8N4M1 RNU6-466P-201ENST00000391224 103 ntBASIC1.1□□□□□ -2.23
SLC44A3Q8N4M1 AC244505.6-201ENST00000452829 130 ntBASIC1.1□□□□□ -2.23
SLC44A3Q8N4M1 Y_RNA.809-201ENST00000516058 95 ntBASIC1.1□□□□□ -2.23
SLC44A3Q8N4M1 RNU6-1265P-201ENST00000516342 103 ntBASIC1.1□□□□□ -2.23
SLC44A3Q8N4M1 AC211469.2-201ENST00000605461 205 ntBASIC1.1□□□□□ -2.23
SLC44A3Q8N4M1 RNU4-32P-201ENST00000363404 141 ntBASIC1.09□□□□□ -2.23
SLC44A3Q8N4M1 RNU6-535P-201ENST00000384722 107 ntBASIC1.09□□□□□ -2.23
SLC44A3Q8N4M1 RNA5SP292-201ENST00000390974 118 ntBASIC1.09□□□□□ -2.23
SLC44A3Q8N4M1 RNA5SP225-201ENST00000410874 135 ntBASIC1.09□□□□□ -2.23
SLC44A3Q8N4M1 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC1.09□□□□□ -2.23
SLC44A3Q8N4M1 AC093729.1-201ENST00000513074 128 ntBASIC1.09□□□□□ -2.23
SLC44A3Q8N4M1 AC138907.6-201ENST00000568401 126 ntBASIC1.09□□□□□ -2.23
SLC44A3Q8N4M1 AC138869.1-201ENST00000568623 124 ntBASIC1.09□□□□□ -2.23
SLC44A3Q8N4M1 MIR3064-201ENST00000581130 66 ntBASIC1.09□□□□□ -2.23
SLC44A3Q8N4M1 uc_338.16-201ENST00000621804 95 ntBASIC1.09□□□□□ -2.23
SLC44A3Q8N4M1 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.08□□□□□ -2.24
SLC44A3Q8N4M1 Y_RNA.32-201ENST00000362589 110 ntBASIC1.08□□□□□ -2.24
SLC44A3Q8N4M1 Y_RNA.316-201ENST00000365118 111 ntBASIC1.08□□□□□ -2.24
SLC44A3Q8N4M1 RNU6-811P-201ENST00000384069 107 ntBASIC1.08□□□□□ -2.24
SLC44A3Q8N4M1 MIR520F-201ENST00000384824 87 ntBASIC1.08□□□□□ -2.24
SLC44A3Q8N4M1 RNU1-119P-201ENST00000391122 165 ntBASIC1.08□□□□□ -2.24
SLC44A3Q8N4M1 MIR1255A-201ENST00000408338 113 ntBASIC1.08□□□□□ -2.24
SLC44A3Q8N4M1 MIR1236-201ENST00000408340 102 ntBASIC1.08□□□□□ -2.24
SLC44A3Q8N4M1 MIR4536-1-201ENST00000583537 88 ntBASIC1.08□□□□□ -2.24
SLC44A3Q8N4M1 MTRNR2L2-201ENST00000604882 87 ntBASIC1.08□□□□□ -2.24
SLC44A3Q8N4M1 SNORD114-21-201ENST00000606412 72 ntBASIC1.08□□□□□ -2.24
SLC44A3Q8N4M1 TRDV1-202ENST00000621643 102 ntBASIC1.08□□□□□ -2.24
SLC44A3Q8N4M1 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.08□□□□□ -2.24
SLC44A3Q8N4M1 Y_RNA.313-201ENST00000365095 103 ntBASIC1.07□□□□□ -2.24
SLC44A3Q8N4M1 Y_RNA.437-201ENST00000384113 113 ntBASIC1.07□□□□□ -2.24
SLC44A3Q8N4M1 MIR599-201ENST00000385069 95 ntBASIC1.07□□□□□ -2.24
SLC44A3Q8N4M1 MIR618-201ENST00000385287 98 ntBASIC1.07□□□□□ -2.24
SLC44A3Q8N4M1 RNU6-279P-201ENST00000391297 101 ntBASIC1.07□□□□□ -2.24
SLC44A3Q8N4M1 AC067940.1-201ENST00000458411 300 ntBASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 286.5 ms