Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 MIR520F-201ENST00000384824 87 ntBASIC1.46□□□□□ -2.18
UBE3DQ7Z6J8 FABP5P4-201ENST00000437203 171 ntBASIC1.46□□□□□ -2.18
UBE3DQ7Z6J8 AC002429.1-201ENST00000437672 148 ntBASIC1.46□□□□□ -2.18
UBE3DQ7Z6J8 RNU6-1110P-201ENST00000516462 101 ntBASIC1.46□□□□□ -2.18
UBE3DQ7Z6J8 RNU6-548P-201ENST00000517083 115 ntBASIC1.46□□□□□ -2.18
UBE3DQ7Z6J8 RNU6-303P-201ENST00000517091 106 ntBASIC1.46□□□□□ -2.18
UBE3DQ7Z6J8 RMST_2.1-201ENST00000617263 136 ntBASIC1.46□□□□□ -2.18
UBE3DQ7Z6J8 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.45□□□□□ -2.18
UBE3DQ7Z6J8 YWHAEP2-201ENST00000580066 112 ntBASIC1.45□□□□□ -2.18
UBE3DQ7Z6J8 YWHAEP3-201ENST00000582767 121 ntBASIC1.45□□□□□ -2.18
UBE3DQ7Z6J8 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.45□□□□□ -2.18
UBE3DQ7Z6J8 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.45□□□□□ -2.18
UBE3DQ7Z6J8 uc_338.16-201ENST00000621804 95 ntBASIC1.45□□□□□ -2.18
UBE3DQ7Z6J8 RNA5SP245-201ENST00000364239 121 ntBASIC1.44□□□□□ -2.18
UBE3DQ7Z6J8 MIR19B1-201ENST00000384829 87 ntBASIC1.44□□□□□ -2.18
UBE3DQ7Z6J8 MIR320A-201ENST00000385302 82 ntBASIC1.44□□□□□ -2.18
UBE3DQ7Z6J8 U3.27-201ENST00000391237 200 ntBASIC1.44□□□□□ -2.18
UBE3DQ7Z6J8 snoU13.23-201ENST00000458863 104 ntBASIC1.44□□□□□ -2.18
UBE3DQ7Z6J8 AC015712.3-201ENST00000559380 164 ntBASIC1.44□□□□□ -2.18
UBE3DQ7Z6J8 BX248123.2-201ENST00000606318 124 ntBASIC1.44□□□□□ -2.18
UBE3DQ7Z6J8 MIR7843-201ENST00000622274 79 ntBASIC1.44□□□□□ -2.18
UBE3DQ7Z6J8 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
UBE3DQ7Z6J8 SNORA17.3-201ENST00000391159 129 ntBASIC1.43□□□□□ -2.18
UBE3DQ7Z6J8 MIR1304-201ENST00000408243 91 ntBASIC1.43□□□□□ -2.18
UBE3DQ7Z6J8 RNU6-1057P-201ENST00000517162 102 ntBASIC1.43□□□□□ -2.18
UBE3DQ7Z6J8 MIR4303-201ENST00000581299 66 ntBASIC1.43□□□□□ -2.18
UBE3DQ7Z6J8 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.43□□□□□ -2.18
UBE3DQ7Z6J8 Y_RNA.32-201ENST00000362589 110 ntBASIC1.42□□□□□ -2.18
UBE3DQ7Z6J8 MIR200A-201ENST00000384875 90 ntBASIC1.42□□□□□ -2.18
UBE3DQ7Z6J8 MIR517C-201ENST00000385103 95 ntBASIC1.42□□□□□ -2.18
UBE3DQ7Z6J8 MIR216B-201ENST00000390186 82 ntBASIC1.42□□□□□ -2.18
UBE3DQ7Z6J8 AC074348.1-201ENST00000426503 132 ntBASIC1.42□□□□□ -2.18
UBE3DQ7Z6J8 U7.7-201ENST00000459276 60 ntBASIC1.42□□□□□ -2.18
UBE3DQ7Z6J8 RNU1-42P-201ENST00000364033 160 ntBASIC1.41□□□□□ -2.18
UBE3DQ7Z6J8 Y_RNA.207-201ENST00000364142 106 ntBASIC1.41□□□□□ -2.18
UBE3DQ7Z6J8 RNU2-59P-201ENST00000410482 191 ntBASIC1.41□□□□□ -2.18
UBE3DQ7Z6J8 RNU7-13P-201ENST00000516413 62 ntBASIC1.41□□□□□ -2.18
UBE3DQ7Z6J8 SNORA31.14-201ENST00000516728 116 ntBASIC1.41□□□□□ -2.18
UBE3DQ7Z6J8 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.41□□□□□ -2.18
UBE3DQ7Z6J8 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
UBE3DQ7Z6J8 Y_RNA.12-201ENST00000362393 112 ntBASIC1.4□□□□□ -2.19
UBE3DQ7Z6J8 RNA5SP403-201ENST00000363598 108 ntBASIC1.4□□□□□ -2.19
UBE3DQ7Z6J8 RNU6-681P-201ENST00000364012 104 ntBASIC1.4□□□□□ -2.19
UBE3DQ7Z6J8 SNORA67.5-201ENST00000391036 107 ntBASIC1.4□□□□□ -2.19
UBE3DQ7Z6J8 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.4□□□□□ -2.19
UBE3DQ7Z6J8 SNORD53B-201ENST00000577887 78 ntBASIC1.4□□□□□ -2.19
UBE3DQ7Z6J8 AL157834.3-201ENST00000615543 103 ntBASIC1.4□□□□□ -2.19
UBE3DQ7Z6J8 RNU6-411P-201ENST00000384451 107 ntBASIC1.39□□□□□ -2.19
UBE3DQ7Z6J8 MIR451A-201ENST00000385059 72 ntBASIC1.39□□□□□ -2.19
UBE3DQ7Z6J8 SNORA67.6-201ENST00000391093 99 ntBASIC1.39□□□□□ -2.19
UBE3DQ7Z6J8 MIR889-201ENST00000401280 79 ntBASIC1.39□□□□□ -2.19
UBE3DQ7Z6J8 AL354695.1-201ENST00000427935 228 ntBASIC1.39□□□□□ -2.19
UBE3DQ7Z6J8 AC097510.1-201ENST00000510945 133 ntBASIC1.39□□□□□ -2.19
UBE3DQ7Z6J8 Y_RNA.681-201ENST00000516445 113 ntBASIC1.39□□□□□ -2.19
UBE3DQ7Z6J8 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.39□□□□□ -2.19
UBE3DQ7Z6J8 RNA5SP327-201ENST00000362494 101 ntBASIC1.38□□□□□ -2.19
UBE3DQ7Z6J8 SNORD26-201ENST00000384147 75 ntBASIC1.38□□□□□ -2.19
UBE3DQ7Z6J8 Y_RNA.532-201ENST00000384590 113 ntBASIC1.38□□□□□ -2.19
UBE3DQ7Z6J8 Y_RNA.565-201ENST00000384719 101 ntBASIC1.38□□□□□ -2.19
UBE3DQ7Z6J8 SNORD90-201ENST00000391145 111 ntBASIC1.38□□□□□ -2.19
UBE3DQ7Z6J8 Y_RNA.606-201ENST00000410579 103 ntBASIC1.38□□□□□ -2.19
UBE3DQ7Z6J8 AC002350.1-201ENST00000490759 375 ntBASIC1.38□□□□□ -2.19
UBE3DQ7Z6J8 AC108210.2-201ENST00000503681 201 ntBASIC1.38□□□□□ -2.19
UBE3DQ7Z6J8 SNORD115-24-201ENST00000363528 82 ntBASIC1.37□□□□□ -2.19
UBE3DQ7Z6J8 RNA5SP117-201ENST00000365294 118 ntBASIC1.37□□□□□ -2.19
UBE3DQ7Z6J8 SCARNA18B-201ENST00000458806 135 ntBASIC1.37□□□□□ -2.19
UBE3DQ7Z6J8 SNORA31.24-201ENST00000517232 57 ntBASIC1.37□□□□□ -2.19
UBE3DQ7Z6J8 RNA5SP99-201ENST00000364020 114 ntBASIC1.36□□□□□ -2.19
UBE3DQ7Z6J8 SNORA24B-201ENST00000384176 131 ntBASIC1.36□□□□□ -2.19
UBE3DQ7Z6J8 SNORD105-201ENST00000386910 85 ntBASIC1.36□□□□□ -2.19
UBE3DQ7Z6J8 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
UBE3DQ7Z6J8 RNU6-871P-201ENST00000516122 100 ntBASIC1.36□□□□□ -2.19
UBE3DQ7Z6J8 RNU6-287P-201ENST00000516230 98 ntBASIC1.36□□□□□ -2.19
UBE3DQ7Z6J8 RNA5SP61-201ENST00000516453 100 ntBASIC1.36□□□□□ -2.19
UBE3DQ7Z6J8 MIR4639-201ENST00000584938 69 ntBASIC1.36□□□□□ -2.19
UBE3DQ7Z6J8 MIR6715A-201ENST00000615929 79 ntBASIC1.36□□□□□ -2.19
UBE3DQ7Z6J8 Y_RNA.36-201ENST00000362602 112 ntBASIC1.35□□□□□ -2.19
UBE3DQ7Z6J8 RNU6-340P-201ENST00000364005 107 ntBASIC1.35□□□□□ -2.19
UBE3DQ7Z6J8 RNU6-1126P-201ENST00000384002 107 ntBASIC1.35□□□□□ -2.19
UBE3DQ7Z6J8 MIR942-201ENST00000401111 86 ntBASIC1.35□□□□□ -2.19
UBE3DQ7Z6J8 snoU13.17-201ENST00000458802 104 ntBASIC1.35□□□□□ -2.19
UBE3DQ7Z6J8 RNU6-469P-201ENST00000516253 101 ntBASIC1.35□□□□□ -2.19
UBE3DQ7Z6J8 AC025627.3-201ENST00000582078 182 ntBASIC1.35□□□□□ -2.19
UBE3DQ7Z6J8 AL353997.5-201ENST00000618886 171 ntBASIC1.35□□□□□ -2.19
UBE3DQ7Z6J8 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.35□□□□□ -2.19
UBE3DQ7Z6J8 RNU4-62P-201ENST00000410125 130 ntBASIC1.34□□□□□ -2.19
UBE3DQ7Z6J8 RNU6-955P-201ENST00000410497 104 ntBASIC1.34□□□□□ -2.19
UBE3DQ7Z6J8 RNU7-74P-201ENST00000459104 62 ntBASIC1.34□□□□□ -2.19
UBE3DQ7Z6J8 RNU7-161P-201ENST00000517289 62 ntBASIC1.34□□□□□ -2.19
UBE3DQ7Z6J8 U6.81-201ENST00000612550 106 ntBASIC1.34□□□□□ -2.19
UBE3DQ7Z6J8 Y_RNA.788-201ENST00000622394 112 ntBASIC1.34□□□□□ -2.19
UBE3DQ7Z6J8 MIR617-201ENST00000385030 97 ntBASIC1.33□□□□□ -2.2
UBE3DQ7Z6J8 SNORD89-201ENST00000390981 114 ntBASIC1.33□□□□□ -2.2
UBE3DQ7Z6J8 MIR2113-201ENST00000459007 91 ntBASIC1.33□□□□□ -2.2
UBE3DQ7Z6J8 MIR3140-201ENST00000583685 90 ntBASIC1.33□□□□□ -2.2
UBE3DQ7Z6J8 ZNF209P-201ENST00000593450 2304 ntBASIC1.32□□□□□ -2.2
UBE3DQ7Z6J8 RNU1-124P-201ENST00000363861 145 ntBASIC1.32□□□□□ -2.2
UBE3DQ7Z6J8 AC108667.1-201ENST00000428618 249 ntBASIC1.32□□□□□ -2.2
UBE3DQ7Z6J8 RPS29P23-201ENST00000458635 123 ntBASIC1.32□□□□□ -2.2
UBE3DQ7Z6J8 AC139453.2-201ENST00000487255 133 ntBASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 167.1 ms