Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RNU6-850P-201ENST00000516934 103 ntBASIC0.31□□□□□ -2.36
COL28A1Q2UY09 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.31□□□□□ -2.36
COL28A1Q2UY09 AL512310.12-203ENST00000640543 90 ntBASIC0.31□□□□□ -2.36
COL28A1Q2UY09 Y_RNA.35-201ENST00000362601 101 ntBASIC0.3□□□□□ -2.36
COL28A1Q2UY09 RNU6-1260P-201ENST00000362944 107 ntBASIC0.3□□□□□ -2.36
COL28A1Q2UY09 TMSB4XP3-201ENST00000445144 114 ntBASIC0.3□□□□□ -2.36
COL28A1Q2UY09 Y_RNA.649-201ENST00000459077 103 ntBASIC0.3□□□□□ -2.36
COL28A1Q2UY09 SNORD33.1-201ENST00000516213 88 ntBASIC0.3□□□□□ -2.36
COL28A1Q2UY09 RNA5SP134-201ENST00000516492 96 ntBASIC0.3□□□□□ -2.36
COL28A1Q2UY09 AL035470.1-201ENST00000622571 220 ntBASIC0.3□□□□□ -2.36
COL28A1Q2UY09 RNA5SP98-201ENST00000363158 137 ntBASIC0.29□□□□□ -2.36
COL28A1Q2UY09 Y_RNA.155-201ENST00000363632 101 ntBASIC0.29□□□□□ -2.36
COL28A1Q2UY09 Y_RNA.563-201ENST00000384707 108 ntBASIC0.29□□□□□ -2.36
COL28A1Q2UY09 RNU6-816P-201ENST00000390914 107 ntBASIC0.29□□□□□ -2.36
COL28A1Q2UY09 SNORD41.1-201ENST00000391000 69 ntBASIC0.29□□□□□ -2.36
COL28A1Q2UY09 RNU6-1268P-201ENST00000391214 107 ntBASIC0.29□□□□□ -2.36
COL28A1Q2UY09 RNU6-1239P-201ENST00000391310 107 ntBASIC0.29□□□□□ -2.36
COL28A1Q2UY09 AC069271.1-201ENST00000445577 156 ntBASIC0.29□□□□□ -2.36
COL28A1Q2UY09 Y_RNA.809-201ENST00000516058 95 ntBASIC0.29□□□□□ -2.36
COL28A1Q2UY09 RNU6-1333P-201ENST00000516162 93 ntBASIC0.29□□□□□ -2.36
COL28A1Q2UY09 RNU6-758P-201ENST00000516292 89 ntBASIC0.29□□□□□ -2.36
COL28A1Q2UY09 AC007012.1-201ENST00000567192 175 ntBASIC0.29□□□□□ -2.36
COL28A1Q2UY09 RNA5SP368-201ENST00000364298 116 ntBASIC0.28□□□□□ -2.36
COL28A1Q2UY09 Y_RNA.309-201ENST00000365046 111 ntBASIC0.28□□□□□ -2.36
COL28A1Q2UY09 Y_RNA.353-201ENST00000365440 108 ntBASIC0.28□□□□□ -2.36
COL28A1Q2UY09 Y_RNA.377-201ENST00000365644 108 ntBASIC0.28□□□□□ -2.36
COL28A1Q2UY09 RNU6-1201P-201ENST00000384227 107 ntBASIC0.28□□□□□ -2.36
COL28A1Q2UY09 MTND5P40-201ENST00000559945 246 ntBASIC0.28□□□□□ -2.36
COL28A1Q2UY09 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.28□□□□□ -2.36
COL28A1Q2UY09 AL162376.1-201ENST00000624117 175 ntBASIC0.28□□□□□ -2.36
COL28A1Q2UY09 Y_RNA.247-201ENST00000364500 92 ntBASIC0.27□□□□□ -2.37
COL28A1Q2UY09 MIR548A1-201ENST00000385041 97 ntBASIC0.27□□□□□ -2.37
COL28A1Q2UY09 AL603908.1-201ENST00000406098 201 ntBASIC0.27□□□□□ -2.37
COL28A1Q2UY09 RNU7-195P-201ENST00000458793 62 ntBASIC0.27□□□□□ -2.37
COL28A1Q2UY09 RNU7-104P-201ENST00000459398 79 ntBASIC0.27□□□□□ -2.37
COL28A1Q2UY09 AL442128.1-201ENST00000615151 90 ntBASIC0.27□□□□□ -2.37
COL28A1Q2UY09 MIR6755-201ENST00000619993 66 ntBASIC0.27□□□□□ -2.37
COL28A1Q2UY09 Y_RNA.173-201ENST00000363776 113 ntBASIC0.26□□□□□ -2.37
COL28A1Q2UY09 Y_RNA.261-201ENST00000364631 102 ntBASIC0.26□□□□□ -2.37
COL28A1Q2UY09 SNORD114-15-201ENST00000364687 72 ntBASIC0.26□□□□□ -2.37
COL28A1Q2UY09 MIR548A3-201ENST00000385297 97 ntBASIC0.26□□□□□ -2.37
COL28A1Q2UY09 MIR548G-201ENST00000408442 89 ntBASIC0.26□□□□□ -2.37
COL28A1Q2UY09 AC008267.6-201ENST00000441664 139 ntBASIC0.26□□□□□ -2.37
COL28A1Q2UY09 RNU7-106P-201ENST00000459514 67 ntBASIC0.26□□□□□ -2.37
COL28A1Q2UY09 IGLVI-20-201ENST00000519296 130 ntBASIC0.26□□□□□ -2.37
COL28A1Q2UY09 MIR3910-1-201ENST00000580936 111 ntBASIC0.26□□□□□ -2.37
COL28A1Q2UY09 AL670379.3-201ENST00000605040 251 ntBASIC0.26□□□□□ -2.37
COL28A1Q2UY09 RNU6-90P-201ENST00000606352 106 ntBASIC0.26□□□□□ -2.37
COL28A1Q2UY09 MIR548L-201ENST00000408303 86 ntBASIC0.25□□□□□ -2.37
COL28A1Q2UY09 RNU6-1265P-201ENST00000516342 103 ntBASIC0.25□□□□□ -2.37
COL28A1Q2UY09 AC069113.3-201ENST00000521019 150 ntBASIC0.25□□□□□ -2.37
COL28A1Q2UY09 AC068339.1-201ENST00000526965 141 ntBASIC0.25□□□□□ -2.37
COL28A1Q2UY09 AL365222.1-201ENST00000614661 98 ntBASIC0.25□□□□□ -2.37
COL28A1Q2UY09 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.25□□□□□ -2.37
COL28A1Q2UY09 MIR409-201ENST00000362237 79 ntBASIC0.24□□□□□ -2.37
COL28A1Q2UY09 Y_RNA.221-201ENST00000364248 96 ntBASIC0.24□□□□□ -2.37
COL28A1Q2UY09 MIR577-201ENST00000385196 96 ntBASIC0.24□□□□□ -2.37
COL28A1Q2UY09 RNU6-1254P-201ENST00000391266 104 ntBASIC0.24□□□□□ -2.37
COL28A1Q2UY09 SPINT5P-201ENST00000448174 155 ntBASIC0.24□□□□□ -2.37
COL28A1Q2UY09 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.24□□□□□ -2.37
COL28A1Q2UY09 MIR4694-201ENST00000578534 80 ntBASIC0.24□□□□□ -2.37
COL28A1Q2UY09 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.24□□□□□ -2.37
COL28A1Q2UY09 MIR4315-1-201ENST00000636800 73 ntBASIC0.24□□□□□ -2.37
COL28A1Q2UY09 MIR4315-2-201ENST00000640925 73 ntBASIC0.24□□□□□ -2.37
COL28A1Q2UY09 Y_RNA.281-201ENST00000364774 94 ntBASIC0.23□□□□□ -2.37
COL28A1Q2UY09 U8.6-201ENST00000364939 135 ntBASIC0.23□□□□□ -2.37
COL28A1Q2UY09 Y_RNA.323-201ENST00000365157 109 ntBASIC0.23□□□□□ -2.37
COL28A1Q2UY09 MIR516A2-201ENST00000384888 90 ntBASIC0.23□□□□□ -2.37
COL28A1Q2UY09 MIR516A1-201ENST00000385033 90 ntBASIC0.23□□□□□ -2.37
COL28A1Q2UY09 AC073261.1-201ENST00000429409 121 ntBASIC0.23□□□□□ -2.37
COL28A1Q2UY09 AC132825.6-201ENST00000638861 357 ntBASIC0.23□□□□□ -2.37
COL28A1Q2UY09 SNORA9.1-201ENST00000362412 131 ntBASIC0.22□□□□□ -2.37
COL28A1Q2UY09 SNORD113-1-201ENST00000365321 69 ntBASIC0.22□□□□□ -2.37
COL28A1Q2UY09 RNU6-22P-201ENST00000384355 107 ntBASIC0.22□□□□□ -2.37
COL28A1Q2UY09 RNU6-1117P-201ENST00000384525 104 ntBASIC0.22□□□□□ -2.37
COL28A1Q2UY09 RNU6-1168P-201ENST00000390831 104 ntBASIC0.22□□□□□ -2.37
COL28A1Q2UY09 MIR5009-201ENST00000578736 100 ntBASIC0.22□□□□□ -2.37
COL28A1Q2UY09 MIR5706-201ENST00000579841 80 ntBASIC0.22□□□□□ -2.37
COL28A1Q2UY09 MIR5093-201ENST00000583199 100 ntBASIC0.22□□□□□ -2.37
COL28A1Q2UY09 RNU1-29P-201ENST00000606574 126 ntBASIC0.22□□□□□ -2.37
COL28A1Q2UY09 AC073869.9-201ENST00000641610 120 ntBASIC0.22□□□□□ -2.37
COL28A1Q2UY09 RNY3P2-201ENST00000362918 102 ntBASIC0.21□□□□□ -2.38
COL28A1Q2UY09 RNU6-832P-201ENST00000363319 107 ntBASIC0.21□□□□□ -2.38
COL28A1Q2UY09 RNA5SP205-201ENST00000364653 136 ntBASIC0.21□□□□□ -2.38
COL28A1Q2UY09 RNU6-815P-201ENST00000384080 113 ntBASIC0.21□□□□□ -2.38
COL28A1Q2UY09 RNU6-524P-201ENST00000384270 107 ntBASIC0.21□□□□□ -2.38
COL28A1Q2UY09 SNORD116-21-201ENST00000384507 92 ntBASIC0.21□□□□□ -2.38
COL28A1Q2UY09 RNU6-880P-201ENST00000384526 107 ntBASIC0.21□□□□□ -2.38
COL28A1Q2UY09 MIR3920-201ENST00000581751 86 ntBASIC0.21□□□□□ -2.38
COL28A1Q2UY09 MIR4493-201ENST00000584016 73 ntBASIC0.21□□□□□ -2.38
COL28A1Q2UY09 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.21□□□□□ -2.38
COL28A1Q2UY09 Y_RNA.57-201ENST00000362806 113 ntBASIC0.2□□□□□ -2.38
COL28A1Q2UY09 SNORD36A-201ENST00000362874 73 ntBASIC0.2□□□□□ -2.38
COL28A1Q2UY09 RNU6-1163P-201ENST00000364516 107 ntBASIC0.2□□□□□ -2.38
COL28A1Q2UY09 Y_RNA.423-201ENST00000384057 113 ntBASIC0.2□□□□□ -2.38
COL28A1Q2UY09 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.2□□□□□ -2.38
COL28A1Q2UY09 RNU7-13P-201ENST00000516413 62 ntBASIC0.2□□□□□ -2.38
COL28A1Q2UY09 RNU6-62P-201ENST00000516526 102 ntBASIC0.2□□□□□ -2.38
COL28A1Q2UY09 MIR3613-201ENST00000579844 87 ntBASIC0.2□□□□□ -2.38
COL28A1Q2UY09 SNORD115-44-201ENST00000365391 82 ntBASIC0.19□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 254.6 ms