Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ZNF209P-201ENST00000593450 2304 ntBASIC1.33□□□□□ -2.2
RNF4P78317 RNU6-1335P-201ENST00000365426 107 ntBASIC1.33□□□□□ -2.2
RNF4P78317 MIR19B1-201ENST00000384829 87 ntBASIC1.33□□□□□ -2.2
RNF4P78317 MIR320A-201ENST00000385302 82 ntBASIC1.33□□□□□ -2.2
RNF4P78317 SNORD105-201ENST00000386910 85 ntBASIC1.33□□□□□ -2.2
RNF4P78317 FABP5P4-201ENST00000437203 171 ntBASIC1.33□□□□□ -2.2
RNF4P78317 AL603825.1-201ENST00000438481 80 ntBASIC1.33□□□□□ -2.2
RNF4P78317 RNU6-1110P-201ENST00000516462 101 ntBASIC1.33□□□□□ -2.2
RNF4P78317 AL136317.1-201ENST00000612653 226 ntBASIC1.33□□□□□ -2.2
RNF4P78317 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
RNF4P78317 MIR518E-201ENST00000385252 88 ntBASIC1.32□□□□□ -2.2
RNF4P78317 AP1B1P2-201ENST00000416196 106 ntBASIC1.32□□□□□ -2.2
RNF4P78317 AC244505.6-201ENST00000452829 130 ntBASIC1.32□□□□□ -2.2
RNF4P78317 RNU7-95P-201ENST00000459222 64 ntBASIC1.32□□□□□ -2.2
RNF4P78317 RNU1-92P-201ENST00000517017 135 ntBASIC1.32□□□□□ -2.2
RNF4P78317 MIR7974-201ENST00000615835 79 ntBASIC1.32□□□□□ -2.2
RNF4P78317 SNORD101-201ENST00000384027 73 ntBASIC1.31□□□□□ -2.2
RNF4P78317 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC1.31□□□□□ -2.2
RNF4P78317 AL450471.1-201ENST00000447509 127 ntBASIC1.31□□□□□ -2.2
RNF4P78317 RNU6-1265P-201ENST00000516342 103 ntBASIC1.31□□□□□ -2.2
RNF4P78317 Y_RNA.174-201ENST00000363781 105 ntBASIC1.3□□□□□ -2.2
RNF4P78317 SNORA25.8-201ENST00000364831 128 ntBASIC1.3□□□□□ -2.2
RNF4P78317 SNORD90-201ENST00000391145 111 ntBASIC1.3□□□□□ -2.2
RNF4P78317 U7.7-201ENST00000459276 60 ntBASIC1.3□□□□□ -2.2
RNF4P78317 RNA5SP404-201ENST00000517118 132 ntBASIC1.3□□□□□ -2.2
RNF4P78317 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.3□□□□□ -2.2
RNF4P78317 SNORD115-24-201ENST00000363528 82 ntBASIC1.29□□□□□ -2.2
RNF4P78317 MIR200A-201ENST00000384875 90 ntBASIC1.29□□□□□ -2.2
RNF4P78317 MIR644A-201ENST00000385262 94 ntBASIC1.29□□□□□ -2.2
RNF4P78317 RNU6-279P-201ENST00000391297 101 ntBASIC1.29□□□□□ -2.2
RNF4P78317 AC002350.1-201ENST00000490759 375 ntBASIC1.29□□□□□ -2.2
RNF4P78317 RNU6-857P-201ENST00000515893 110 ntBASIC1.29□□□□□ -2.2
RNF4P78317 RNA5SP395-201ENST00000516567 118 ntBASIC1.29□□□□□ -2.2
RNF4P78317 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.29□□□□□ -2.2
RNF4P78317 MIR4696-201ENST00000581431 70 ntBASIC1.29□□□□□ -2.2
RNF4P78317 MIR4712-201ENST00000583750 82 ntBASIC1.29□□□□□ -2.2
RNF4P78317 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.29□□□□□ -2.2
RNF4P78317 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.28□□□□□ -2.2
RNF4P78317 RNU6-664P-201ENST00000362381 107 ntBASIC1.28□□□□□ -2.2
RNF4P78317 Y_RNA.239-201ENST00000364444 113 ntBASIC1.28□□□□□ -2.2
RNF4P78317 RNA5SP117-201ENST00000365294 118 ntBASIC1.28□□□□□ -2.2
RNF4P78317 MIR4421-201ENST00000578133 69 ntBASIC1.28□□□□□ -2.2
RNF4P78317 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.27□□□□□ -2.21
RNF4P78317 Y_RNA.94-201ENST00000363068 106 ntBASIC1.27□□□□□ -2.21
RNF4P78317 SNORA7.1-201ENST00000363750 139 ntBASIC1.27□□□□□ -2.21
RNF4P78317 RNU6-478P-201ENST00000363904 110 ntBASIC1.27□□□□□ -2.21
RNF4P78317 RNU6-939P-201ENST00000384634 107 ntBASIC1.27□□□□□ -2.21
RNF4P78317 RNU6-129P-201ENST00000391022 107 ntBASIC1.27□□□□□ -2.21
RNF4P78317 Y_RNA.596-201ENST00000410462 109 ntBASIC1.27□□□□□ -2.21
RNF4P78317 RNU7-104P-201ENST00000459398 79 ntBASIC1.27□□□□□ -2.21
RNF4P78317 snoU13.31-201ENST00000607291 104 ntBASIC1.27□□□□□ -2.21
RNF4P78317 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.27□□□□□ -2.21
RNF4P78317 RNU6-1108P-201ENST00000516308 104 ntBASIC1.26□□□□□ -2.21
RNF4P78317 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
RNF4P78317 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
RNF4P78317 RNU6-161P-201ENST00000363051 106 ntBASIC1.25□□□□□ -2.21
RNF4P78317 Y_RNA.244-201ENST00000364484 109 ntBASIC1.25□□□□□ -2.21
RNF4P78317 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.25□□□□□ -2.21
RNF4P78317 RNU7-161P-201ENST00000517289 62 ntBASIC1.25□□□□□ -2.21
RNF4P78317 MIR4498-201ENST00000577599 66 ntBASIC1.25□□□□□ -2.21
RNF4P78317 MTRNR2L2-201ENST00000604882 87 ntBASIC1.25□□□□□ -2.21
RNF4P78317 SNORA63.2-201ENST00000362603 126 ntBASIC1.24□□□□□ -2.21
RNF4P78317 RNU6-624P-201ENST00000363411 107 ntBASIC1.24□□□□□ -2.21
RNF4P78317 RNU1-124P-201ENST00000363861 145 ntBASIC1.24□□□□□ -2.21
RNF4P78317 SNORD114-24-201ENST00000365029 72 ntBASIC1.24□□□□□ -2.21
RNF4P78317 MIR573-201ENST00000384964 99 ntBASIC1.24□□□□□ -2.21
RNF4P78317 RNU1-123P-201ENST00000458950 160 ntBASIC1.24□□□□□ -2.21
RNF4P78317 RNU7-13P-201ENST00000516413 62 ntBASIC1.24□□□□□ -2.21
RNF4P78317 RNA5SP61-201ENST00000516453 100 ntBASIC1.24□□□□□ -2.21
RNF4P78317 Y_RNA.207-201ENST00000364142 106 ntBASIC1.23□□□□□ -2.21
RNF4P78317 Y_RNA.338-201ENST00000365320 114 ntBASIC1.23□□□□□ -2.21
RNF4P78317 RNU6-1051P-201ENST00000365471 102 ntBASIC1.23□□□□□ -2.21
RNF4P78317 RNU6-469P-201ENST00000516253 101 ntBASIC1.23□□□□□ -2.21
RNF4P78317 RNA5SP255-201ENST00000516370 107 ntBASIC1.23□□□□□ -2.21
RNF4P78317 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.23□□□□□ -2.21
RNF4P78317 RNA5SP403-201ENST00000363598 108 ntBASIC1.22□□□□□ -2.21
RNF4P78317 RNU6-24P-201ENST00000384440 107 ntBASIC1.22□□□□□ -2.21
RNF4P78317 RNU6-935P-201ENST00000410371 100 ntBASIC1.22□□□□□ -2.21
RNF4P78317 FGF7P7-201ENST00000514120 227 ntBASIC1.22□□□□□ -2.21
RNF4P78317 MIR3612-201ENST00000579753 87 ntBASIC1.22□□□□□ -2.21
RNF4P78317 MIR3140-201ENST00000583685 90 ntBASIC1.22□□□□□ -2.21
RNF4P78317 DLEU2_3.1-201ENST00000620005 73 ntBASIC1.22□□□□□ -2.21
RNF4P78317 MIR451A-201ENST00000385059 72 ntBASIC1.21□□□□□ -2.22
RNF4P78317 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.21□□□□□ -2.22
RNF4P78317 RNU6-287P-201ENST00000516230 98 ntBASIC1.21□□□□□ -2.22
RNF4P78317 AL353770.2-201ENST00000620024 78 ntBASIC1.21□□□□□ -2.22
RNF4P78317 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
RNF4P78317 MIR618-201ENST00000385287 98 ntBASIC1.2□□□□□ -2.22
RNF4P78317 MIR758-201ENST00000390227 88 ntBASIC1.2□□□□□ -2.22
RNF4P78317 SNORA40.6-201ENST00000391153 128 ntBASIC1.2□□□□□ -2.22
RNF4P78317 SNORD99-201ENST00000408612 74 ntBASIC1.2□□□□□ -2.22
RNF4P78317 RNU6-1052P-201ENST00000411398 104 ntBASIC1.2□□□□□ -2.22
RNF4P78317 AC004223.1-201ENST00000479840 271 ntBASIC1.2□□□□□ -2.22
RNF4P78317 RNU6-719P-201ENST00000516671 104 ntBASIC1.2□□□□□ -2.22
RNF4P78317 MIR3660-201ENST00000584845 100 ntBASIC1.2□□□□□ -2.22
RNF4P78317 Evf-2_5p.1-201ENST00000614213 142 ntBASIC1.2□□□□□ -2.22
RNF4P78317 RNU6-315P-201ENST00000362666 107 ntBASIC1.19□□□□□ -2.22
RNF4P78317 SNORD77.2-201ENST00000391045 68 ntBASIC1.19□□□□□ -2.22
RNF4P78317 AC011195.1-201ENST00000578177 177 ntBASIC1.19□□□□□ -2.22
RNF4P78317 AC025627.3-201ENST00000582078 182 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 262.7 ms