Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC-0.57□□□□□ -2.5
FOXA1P55317 AC096720.1-201ENST00000604441 183 ntBASIC-0.57□□□□□ -2.5
FOXA1P55317 U6.100-201ENST00000636230 99 ntBASIC-0.57□□□□□ -2.5
FOXA1P55317 MIR409-201ENST00000362237 79 ntBASIC-0.58□□□□□ -2.5
FOXA1P55317 Y_RNA.215-201ENST00000364204 112 ntBASIC-0.58□□□□□ -2.5
FOXA1P55317 Y_RNA.233-201ENST00000364407 101 ntBASIC-0.58□□□□□ -2.5
FOXA1P55317 Y_RNA.447-201ENST00000384184 113 ntBASIC-0.58□□□□□ -2.5
FOXA1P55317 Y_RNA.459-201ENST00000384251 102 ntBASIC-0.58□□□□□ -2.5
FOXA1P55317 RNU6-243P-201ENST00000391140 107 ntBASIC-0.58□□□□□ -2.5
FOXA1P55317 RNU7-121P-201ENST00000516604 62 ntBASIC-0.58□□□□□ -2.5
FOXA1P55317 AC022559.1-201ENST00000520905 205 ntBASIC-0.58□□□□□ -2.5
FOXA1P55317 SNORD36A-201ENST00000362874 73 ntBASIC-0.59□□□□□ -2.5
FOXA1P55317 Y_RNA.83-201ENST00000363005 113 ntBASIC-0.59□□□□□ -2.5
FOXA1P55317 Y_RNA.200-201ENST00000364018 102 ntBASIC-0.59□□□□□ -2.5
FOXA1P55317 MT-TQ-201ENST00000387372 72 ntBASIC-0.59□□□□□ -2.5
FOXA1P55317 SNORD75.1-201ENST00000408373 60 ntBASIC-0.59□□□□□ -2.5
FOXA1P55317 Y_RNA.596-201ENST00000410462 109 ntBASIC-0.59□□□□□ -2.5
FOXA1P55317 MIR3163-201ENST00000581592 73 ntBASIC-0.59□□□□□ -2.5
FOXA1P55317 DNAJC19P2-201ENST00000593340 302 ntBASIC-0.59□□□□□ -2.5
FOXA1P55317 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-0.59□□□□□ -2.5
FOXA1P55317 AC021753.1-201ENST00000635724 168 ntBASIC-0.59□□□□□ -2.5
FOXA1P55317 MIR1255B1-201ENST00000636325 63 ntBASIC-0.59□□□□□ -2.5
FOXA1P55317 MIR20A-201ENST00000362279 71 ntBASIC-0.6□□□□□ -2.51
FOXA1P55317 Y_RNA.57-201ENST00000362806 113 ntBASIC-0.6□□□□□ -2.51
FOXA1P55317 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.6□□□□□ -2.51
FOXA1P55317 Y_RNA.207-201ENST00000364142 106 ntBASIC-0.6□□□□□ -2.51
FOXA1P55317 RNU6-1318P-201ENST00000365389 103 ntBASIC-0.6□□□□□ -2.51
FOXA1P55317 RNU6-738P-201ENST00000384531 106 ntBASIC-0.6□□□□□ -2.51
FOXA1P55317 MIR9-2-201ENST00000384838 87 ntBASIC-0.6□□□□□ -2.51
FOXA1P55317 Y_RNA.604-201ENST00000410574 102 ntBASIC-0.6□□□□□ -2.51
FOXA1P55317 RNU6-1023P-201ENST00000516137 106 ntBASIC-0.6□□□□□ -2.51
FOXA1P55317 AC007012.1-201ENST00000567192 175 ntBASIC-0.6□□□□□ -2.51
FOXA1P55317 AL391099.1-201ENST00000624635 187 ntBASIC-0.6□□□□□ -2.51
FOXA1P55317 SNORA20.1-201ENST00000364790 130 ntBASIC-0.61□□□□□ -2.51
FOXA1P55317 MIR568-201ENST00000385036 95 ntBASIC-0.61□□□□□ -2.51
FOXA1P55317 MTCYBP9-201ENST00000431021 303 ntBASIC-0.61□□□□□ -2.51
FOXA1P55317 SPINT5P-201ENST00000448174 155 ntBASIC-0.61□□□□□ -2.51
FOXA1P55317 IGKV1-22-201ENST00000524313 326 ntBASIC-0.61□□□□□ -2.51
FOXA1P55317 AC062037.2-201ENST00000610137 73 ntBASIC-0.61□□□□□ -2.51
FOXA1P55317 AC093726.3-201ENST00000637588 150 ntBASIC-0.61□□□□□ -2.51
FOXA1P55317 Y_RNA.11-201ENST00000362375 109 ntBASIC-0.62□□□□□ -2.51
FOXA1P55317 RNU6-957P-201ENST00000363652 99 ntBASIC-0.62□□□□□ -2.51
FOXA1P55317 MIR652-201ENST00000385278 98 ntBASIC-0.62□□□□□ -2.51
FOXA1P55317 MIR1302-3-201ENST00000408128 138 ntBASIC-0.62□□□□□ -2.51
FOXA1P55317 SNORA7.5-201ENST00000410672 110 ntBASIC-0.62□□□□□ -2.51
FOXA1P55317 AC244090.1-201ENST00000441884 93 ntBASIC-0.62□□□□□ -2.51
FOXA1P55317 RNU6-1006P-201ENST00000516998 103 ntBASIC-0.62□□□□□ -2.51
FOXA1P55317 AP000676.1-201ENST00000533307 52 ntBASIC-0.62□□□□□ -2.51
FOXA1P55317 Y_RNA.812-201ENST00000610788 101 ntBASIC-0.62□□□□□ -2.51
FOXA1P55317 Y_RNA.784-201ENST00000613803 101 ntBASIC-0.62□□□□□ -2.51
FOXA1P55317 Y_RNA.787-201ENST00000616522 101 ntBASIC-0.62□□□□□ -2.51
FOXA1P55317 Y_RNA.780-201ENST00000617336 101 ntBASIC-0.62□□□□□ -2.51
FOXA1P55317 Y_RNA.801-201ENST00000619005 101 ntBASIC-0.62□□□□□ -2.51
FOXA1P55317 RNU4-63P-201ENST00000411313 118 ntBASIC-0.63□□□□□ -2.51
FOXA1P55317 AL445193.1-201ENST00000441183 141 ntBASIC-0.63□□□□□ -2.51
FOXA1P55317 RNU6-138P-201ENST00000515952 107 ntBASIC-0.63□□□□□ -2.51
FOXA1P55317 MIR3121-201ENST00000579680 77 ntBASIC-0.63□□□□□ -2.51
FOXA1P55317 AL512310.12-203ENST00000640543 90 ntBASIC-0.63□□□□□ -2.51
FOXA1P55317 Y_RNA.78-201ENST00000362970 110 ntBASIC-0.64□□□□□ -2.51
FOXA1P55317 Y_RNA.133-201ENST00000363428 110 ntBASIC-0.64□□□□□ -2.51
FOXA1P55317 SNORA63-201ENST00000363450 132 ntBASIC-0.64□□□□□ -2.51
FOXA1P55317 RNA5SP331-201ENST00000364986 107 ntBASIC-0.64□□□□□ -2.51
FOXA1P55317 RNU6-901P-201ENST00000384593 106 ntBASIC-0.64□□□□□ -2.51
FOXA1P55317 MIR204-201ENST00000385200 110 ntBASIC-0.64□□□□□ -2.51
FOXA1P55317 MIR548G-201ENST00000408442 89 ntBASIC-0.64□□□□□ -2.51
FOXA1P55317 snoU13.11-201ENST00000459219 104 ntBASIC-0.64□□□□□ -2.51
FOXA1P55317 RNA5SP67-201ENST00000516422 131 ntBASIC-0.64□□□□□ -2.51
FOXA1P55317 RNU6-90P-201ENST00000606352 106 ntBASIC-0.64□□□□□ -2.51
FOXA1P55317 RNU6-1313P-201ENST00000362622 102 ntBASIC-0.65□□□□□ -2.51
FOXA1P55317 Y_RNA.173-201ENST00000363776 113 ntBASIC-0.65□□□□□ -2.51
FOXA1P55317 Y_RNA.198-201ENST00000364013 98 ntBASIC-0.65□□□□□ -2.51
FOXA1P55317 Y_RNA.213-201ENST00000364178 111 ntBASIC-0.65□□□□□ -2.51
FOXA1P55317 Y_RNA.247-201ENST00000364500 92 ntBASIC-0.65□□□□□ -2.51
FOXA1P55317 RNU6-900P-201ENST00000384498 102 ntBASIC-0.65□□□□□ -2.51
FOXA1P55317 MIR759-201ENST00000390224 91 ntBASIC-0.65□□□□□ -2.51
FOXA1P55317 RNA5SP169-201ENST00000517268 117 ntBASIC-0.65□□□□□ -2.51
FOXA1P55317 AC130289.1-201ENST00000577321 73 ntBASIC-0.65□□□□□ -2.51
FOXA1P55317 SNORD114-14-201ENST00000362723 75 ntBASIC-0.66□□□□□ -2.52
FOXA1P55317 SNORD38.1-201ENST00000363863 68 ntBASIC-0.66□□□□□ -2.52
FOXA1P55317 RNU4-11P-201ENST00000365287 132 ntBASIC-0.66□□□□□ -2.52
FOXA1P55317 SNORD101-201ENST00000384027 73 ntBASIC-0.66□□□□□ -2.52
FOXA1P55317 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.66□□□□□ -2.52
FOXA1P55317 SNORD56B-201ENST00000384713 71 ntBASIC-0.66□□□□□ -2.52
FOXA1P55317 SNORA3B-201ENST00000391305 131 ntBASIC-0.66□□□□□ -2.52
FOXA1P55317 RNU6-735P-201ENST00000410612 107 ntBASIC-0.66□□□□□ -2.52
FOXA1P55317 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.66□□□□□ -2.52
FOXA1P55317 MIR4696-201ENST00000581431 70 ntBASIC-0.66□□□□□ -2.52
FOXA1P55317 MIR4436A-201ENST00000585278 85 ntBASIC-0.66□□□□□ -2.52
FOXA1P55317 AC072026.1-201ENST00000605023 201 ntBASIC-0.66□□□□□ -2.52
FOXA1P55317 AC141273.2-201ENST00000618989 130 ntBASIC-0.66□□□□□ -2.52
FOXA1P55317 U4.1-201ENST00000620349 87 ntBASIC-0.66□□□□□ -2.52
FOXA1P55317 RNU6-915P-201ENST00000364943 103 ntBASIC-0.67□□□□□ -2.52
FOXA1P55317 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.67□□□□□ -2.52
FOXA1P55317 Y_RNA.401-201ENST00000383965 117 ntBASIC-0.67□□□□□ -2.52
FOXA1P55317 Y_RNA.785-201ENST00000384290 109 ntBASIC-0.67□□□□□ -2.52
FOXA1P55317 SNORA49-201ENST00000386157 136 ntBASIC-0.67□□□□□ -2.52
FOXA1P55317 RNU6-460P-201ENST00000391158 108 ntBASIC-0.67□□□□□ -2.52
FOXA1P55317 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-0.67□□□□□ -2.52
FOXA1P55317 RN7SKP19-201ENST00000516016 252 ntBASIC-0.67□□□□□ -2.52
FOXA1P55317 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.67□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 175.3 ms