Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MIR7107-201ENST00000611489 80 ntBASIC0.49□□□□□ -2.33
HOXA1P49639 RNU6-42P-201ENST00000384165 107 ntBASIC0.48□□□□□ -2.33
HOXA1P49639 RNU6-1254P-201ENST00000391266 104 ntBASIC0.48□□□□□ -2.33
HOXA1P49639 snoU13.11-201ENST00000459219 104 ntBASIC0.48□□□□□ -2.33
HOXA1P49639 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.48□□□□□ -2.33
HOXA1P49639 AC103810.7-201ENST00000607821 91 ntBASIC0.48□□□□□ -2.33
HOXA1P49639 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.48□□□□□ -2.33
HOXA1P49639 RNU6-1260P-201ENST00000362944 107 ntBASIC0.47□□□□□ -2.33
HOXA1P49639 RNA5SP403-201ENST00000363598 108 ntBASIC0.47□□□□□ -2.33
HOXA1P49639 RNU6-957P-201ENST00000363652 99 ntBASIC0.47□□□□□ -2.33
HOXA1P49639 MIR518E-201ENST00000385252 88 ntBASIC0.47□□□□□ -2.33
HOXA1P49639 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.47□□□□□ -2.33
HOXA1P49639 RNU6-243P-201ENST00000391140 107 ntBASIC0.47□□□□□ -2.33
HOXA1P49639 RNU6-644P-201ENST00000391155 98 ntBASIC0.47□□□□□ -2.33
HOXA1P49639 AL031737.1-201ENST00000450125 223 ntBASIC0.47□□□□□ -2.33
HOXA1P49639 AL157398.1-201ENST00000452981 186 ntBASIC0.47□□□□□ -2.33
HOXA1P49639 MIR4752-201ENST00000579672 72 ntBASIC0.47□□□□□ -2.33
HOXA1P49639 MIR6788-201ENST00000618842 66 ntBASIC0.47□□□□□ -2.33
HOXA1P49639 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.47□□□□□ -2.33
HOXA1P49639 MIR519A1-201ENST00000385257 85 ntBASIC0.46□□□□□ -2.34
HOXA1P49639 AC069271.1-201ENST00000445577 156 ntBASIC0.46□□□□□ -2.34
HOXA1P49639 RNU7-61P-201ENST00000515897 61 ntBASIC0.46□□□□□ -2.34
HOXA1P49639 RNA5SP121-201ENST00000516537 101 ntBASIC0.46□□□□□ -2.34
HOXA1P49639 RNU6-135P-201ENST00000516769 101 ntBASIC0.46□□□□□ -2.34
HOXA1P49639 AL513043.2-201ENST00000573941 143 ntBASIC0.46□□□□□ -2.34
HOXA1P49639 MIR151B-201ENST00000584249 96 ntBASIC0.46□□□□□ -2.34
HOXA1P49639 Y_RNA.10-201ENST00000362371 110 ntBASIC0.45□□□□□ -2.34
HOXA1P49639 RNU6-766P-201ENST00000362478 107 ntBASIC0.45□□□□□ -2.34
HOXA1P49639 Y_RNA.78-201ENST00000362970 110 ntBASIC0.45□□□□□ -2.34
HOXA1P49639 RNU6-813P-201ENST00000384691 107 ntBASIC0.45□□□□□ -2.34
HOXA1P49639 MIR548L-201ENST00000408303 86 ntBASIC0.45□□□□□ -2.34
HOXA1P49639 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.45□□□□□ -2.34
HOXA1P49639 SNORA40.8-201ENST00000411034 126 ntBASIC0.45□□□□□ -2.34
HOXA1P49639 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.45□□□□□ -2.34
HOXA1P49639 RNU6-162P-201ENST00000516228 103 ntBASIC0.45□□□□□ -2.34
HOXA1P49639 MIR6828-201ENST00000636181 60 ntBASIC0.45□□□□□ -2.34
HOXA1P49639 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.45□□□□□ -2.34
HOXA1P49639 SNORD118-201ENST00000363593 134 ntBASIC0.44□□□□□ -2.34
HOXA1P49639 RNU6-755P-201ENST00000364400 103 ntBASIC0.44□□□□□ -2.34
HOXA1P49639 RNU6-726P-201ENST00000364680 107 ntBASIC0.44□□□□□ -2.34
HOXA1P49639 RNU6-147P-201ENST00000383983 107 ntBASIC0.44□□□□□ -2.34
HOXA1P49639 MIR518A1-201ENST00000385068 85 ntBASIC0.44□□□□□ -2.34
HOXA1P49639 MIR548J-201ENST00000408833 112 ntBASIC0.44□□□□□ -2.34
HOXA1P49639 RNU6-1223P-201ENST00000517124 104 ntBASIC0.44□□□□□ -2.34
HOXA1P49639 AC018659.1-201ENST00000551083 169 ntBASIC0.44□□□□□ -2.34
HOXA1P49639 TRDV1-202ENST00000621643 102 ntBASIC0.44□□□□□ -2.34
HOXA1P49639 AC067863.3-201ENST00000624172 122 ntBASIC0.44□□□□□ -2.34
HOXA1P49639 U6.100-201ENST00000636230 99 ntBASIC0.44□□□□□ -2.34
HOXA1P49639 MIR103A1-201ENST00000362165 78 ntBASIC0.43□□□□□ -2.34
HOXA1P49639 RNA5SP347-201ENST00000362445 119 ntBASIC0.43□□□□□ -2.34
HOXA1P49639 RNU6-1125P-201ENST00000363601 107 ntBASIC0.43□□□□□ -2.34
HOXA1P49639 RNU6-480P-201ENST00000384332 107 ntBASIC0.43□□□□□ -2.34
HOXA1P49639 SNORD71-201ENST00000411292 86 ntBASIC0.43□□□□□ -2.34
HOXA1P49639 snoU13.18-201ENST00000459483 104 ntBASIC0.43□□□□□ -2.34
HOXA1P49639 RNU6-1265P-201ENST00000516342 103 ntBASIC0.43□□□□□ -2.34
HOXA1P49639 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.43□□□□□ -2.34
HOXA1P49639 MIR5000-201ENST00000577717 103 ntBASIC0.43□□□□□ -2.34
HOXA1P49639 Y_RNA.107-201ENST00000363190 121 ntBASIC0.42□□□□□ -2.34
HOXA1P49639 Y_RNA.118-201ENST00000363300 101 ntBASIC0.42□□□□□ -2.34
HOXA1P49639 RNU6-1113P-201ENST00000384348 107 ntBASIC0.42□□□□□ -2.34
HOXA1P49639 RNU7-13P-201ENST00000516413 62 ntBASIC0.42□□□□□ -2.34
HOXA1P49639 MIR3920-201ENST00000581751 86 ntBASIC0.42□□□□□ -2.34
HOXA1P49639 Y_RNA.508-201ENST00000384502 114 ntBASIC0.41□□□□□ -2.34
HOXA1P49639 RN7SKP12-201ENST00000516275 143 ntBASIC0.41□□□□□ -2.34
HOXA1P49639 MIR548AG2-201ENST00000581228 64 ntBASIC0.41□□□□□ -2.34
HOXA1P49639 MIR4439-201ENST00000583746 80 ntBASIC0.41□□□□□ -2.34
HOXA1P49639 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.41□□□□□ -2.34
HOXA1P49639 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.41□□□□□ -2.34
HOXA1P49639 Y_RNA.283-201ENST00000364798 112 ntBASIC0.4□□□□□ -2.35
HOXA1P49639 Y_RNA.423-201ENST00000384057 113 ntBASIC0.4□□□□□ -2.35
HOXA1P49639 SNORA50A-201ENST00000384225 134 ntBASIC0.4□□□□□ -2.35
HOXA1P49639 RNU6-269P-201ENST00000391077 97 ntBASIC0.4□□□□□ -2.35
HOXA1P49639 AC098934.3-201ENST00000430450 190 ntBASIC0.4□□□□□ -2.35
HOXA1P49639 RNU7-85P-201ENST00000458851 63 ntBASIC0.4□□□□□ -2.35
HOXA1P49639 MIRLET7D-201ENST00000362263 87 ntBASIC0.39□□□□□ -2.35
HOXA1P49639 Y_RNA.355-201ENST00000365462 98 ntBASIC0.39□□□□□ -2.35
HOXA1P49639 Y_RNA.466-201ENST00000384294 113 ntBASIC0.39□□□□□ -2.35
HOXA1P49639 RNU6-466P-201ENST00000391224 103 ntBASIC0.39□□□□□ -2.35
HOXA1P49639 Y_RNA.705-201ENST00000516862 110 ntBASIC0.39□□□□□ -2.35
HOXA1P49639 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.39□□□□□ -2.35
HOXA1P49639 U7.3-201ENST00000616123 62 ntBASIC0.39□□□□□ -2.35
HOXA1P49639 Y_RNA.818-201ENST00000618813 71 ntBASIC0.39□□□□□ -2.35
HOXA1P49639 SNORD44.1-201ENST00000363202 61 ntBASIC0.38□□□□□ -2.35
HOXA1P49639 SNORD41.1-201ENST00000391000 69 ntBASIC0.38□□□□□ -2.35
HOXA1P49639 RNU6-887P-201ENST00000410660 100 ntBASIC0.38□□□□□ -2.35
HOXA1P49639 RNU6-75P-201ENST00000515944 104 ntBASIC0.38□□□□□ -2.35
HOXA1P49639 RNU6-1232P-201ENST00000516299 86 ntBASIC0.38□□□□□ -2.35
HOXA1P49639 MIR4714-201ENST00000580728 77 ntBASIC0.38□□□□□ -2.35
HOXA1P49639 SNORA70.25-201ENST00000612741 95 ntBASIC0.38□□□□□ -2.35
HOXA1P49639 MIR6515-201ENST00000619843 57 ntBASIC0.38□□□□□ -2.35
HOXA1P49639 MIR6755-201ENST00000619993 66 ntBASIC0.38□□□□□ -2.35
HOXA1P49639 MIR5087-201ENST00000635826 76 ntBASIC0.38□□□□□ -2.35
HOXA1P49639 Y_RNA.93-201ENST00000363066 109 ntBASIC0.37□□□□□ -2.35
HOXA1P49639 Y_RNA.190-201ENST00000363964 101 ntBASIC0.37□□□□□ -2.35
HOXA1P49639 SNORD58A-201ENST00000383875 65 ntBASIC0.37□□□□□ -2.35
HOXA1P49639 Y_RNA.495-201ENST00000384435 112 ntBASIC0.37□□□□□ -2.35
HOXA1P49639 Y_RNA.544-201ENST00000384650 113 ntBASIC0.37□□□□□ -2.35
HOXA1P49639 AC114737.2-201ENST00000421583 173 ntBASIC0.37□□□□□ -2.35
HOXA1P49639 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.37□□□□□ -2.35
HOXA1P49639 Y_RNA.648-201ENST00000459455 110 ntBASIC0.37□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 168.4 ms