Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 SNORD50.2-201ENST00000365465 70 ntBASIC0.11□□□□□ -2.39
TNFRSF4P43489 RNU6-1201P-201ENST00000384227 107 ntBASIC0.11□□□□□ -2.39
TNFRSF4P43489 SNORD41.1-201ENST00000391000 69 ntBASIC0.11□□□□□ -2.39
TNFRSF4P43489 RNU6-269P-201ENST00000391077 97 ntBASIC0.11□□□□□ -2.39
TNFRSF4P43489 AL353813.1-201ENST00000440700 253 ntBASIC0.11□□□□□ -2.39
TNFRSF4P43489 SNORD33.1-201ENST00000516213 88 ntBASIC0.11□□□□□ -2.39
TNFRSF4P43489 RNU6-1265P-201ENST00000516342 103 ntBASIC0.11□□□□□ -2.39
TNFRSF4P43489 RNU6-1006P-201ENST00000516998 103 ntBASIC0.11□□□□□ -2.39
TNFRSF4P43489 AL035470.1-201ENST00000622571 220 ntBASIC0.11□□□□□ -2.39
TNFRSF4P43489 AL162376.1-201ENST00000624117 175 ntBASIC0.11□□□□□ -2.39
TNFRSF4P43489 MIR3914-2-201ENST00000637339 95 ntBASIC0.11□□□□□ -2.39
TNFRSF4P43489 Y_RNA.71-201ENST00000362892 104 ntBASIC0.1□□□□□ -2.39
TNFRSF4P43489 RNU6-704P-201ENST00000364162 103 ntBASIC0.1□□□□□ -2.39
TNFRSF4P43489 Y_RNA.323-201ENST00000365157 109 ntBASIC0.1□□□□□ -2.39
TNFRSF4P43489 Y_RNA.433-201ENST00000384089 102 ntBASIC0.1□□□□□ -2.39
TNFRSF4P43489 MIR548A1-201ENST00000385041 97 ntBASIC0.1□□□□□ -2.39
TNFRSF4P43489 MIR548A3-201ENST00000385297 97 ntBASIC0.1□□□□□ -2.39
TNFRSF4P43489 RNU6-243P-201ENST00000391140 107 ntBASIC0.1□□□□□ -2.39
TNFRSF4P43489 RNU6-1254P-201ENST00000391266 104 ntBASIC0.1□□□□□ -2.39
TNFRSF4P43489 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.1□□□□□ -2.39
TNFRSF4P43489 Y_RNA.712-201ENST00000517011 92 ntBASIC0.1□□□□□ -2.39
TNFRSF4P43489 MIR5190-201ENST00000581537 80 ntBASIC0.1□□□□□ -2.39
TNFRSF4P43489 AC096720.1-201ENST00000604441 183 ntBASIC0.1□□□□□ -2.39
TNFRSF4P43489 SNORA70.25-201ENST00000612741 95 ntBASIC0.1□□□□□ -2.39
TNFRSF4P43489 AL442128.1-201ENST00000615151 90 ntBASIC0.1□□□□□ -2.39
TNFRSF4P43489 MIR499B-201ENST00000636498 73 ntBASIC0.1□□□□□ -2.39
TNFRSF4P43489 U6.95-201ENST00000636931 70 ntBASIC0.1□□□□□ -2.39
TNFRSF4P43489 AC073869.9-201ENST00000641610 120 ntBASIC0.1□□□□□ -2.39
TNFRSF4P43489 MIR643-201ENST00000385267 97 ntBASIC0.09□□□□□ -2.4
TNFRSF4P43489 RNU6-848P-201ENST00000515948 107 ntBASIC0.09□□□□□ -2.4
TNFRSF4P43489 RNU6-617P-201ENST00000516147 107 ntBASIC0.09□□□□□ -2.4
TNFRSF4P43489 RNU6-473P-201ENST00000516164 107 ntBASIC0.09□□□□□ -2.4
TNFRSF4P43489 RNU6-1049P-201ENST00000516414 107 ntBASIC0.09□□□□□ -2.4
TNFRSF4P43489 RNU6-509P-201ENST00000363519 107 ntBASIC0.08□□□□□ -2.4
TNFRSF4P43489 Y_RNA.549-201ENST00000384657 102 ntBASIC0.08□□□□□ -2.4
TNFRSF4P43489 RNU6-127P-201ENST00000390897 107 ntBASIC0.08□□□□□ -2.4
TNFRSF4P43489 MIR548M-201ENST00000408260 86 ntBASIC0.08□□□□□ -2.4
TNFRSF4P43489 RNU6-1232P-201ENST00000516299 86 ntBASIC0.08□□□□□ -2.4
TNFRSF4P43489 RNU6-659P-201ENST00000516454 104 ntBASIC0.08□□□□□ -2.4
TNFRSF4P43489 MIR4679-2-201ENST00000578358 77 ntBASIC0.08□□□□□ -2.4
TNFRSF4P43489 MIR4768-201ENST00000585270 74 ntBASIC0.08□□□□□ -2.4
TNFRSF4P43489 AL670379.3-201ENST00000605040 251 ntBASIC0.08□□□□□ -2.4
TNFRSF4P43489 RNU1-29P-201ENST00000606574 126 ntBASIC0.08□□□□□ -2.4
TNFRSF4P43489 U7.6-201ENST00000610841 64 ntBASIC0.08□□□□□ -2.4
TNFRSF4P43489 Y_RNA.173-201ENST00000363776 113 ntBASIC0.07□□□□□ -2.4
TNFRSF4P43489 SNORD116-14-201ENST00000383894 92 ntBASIC0.07□□□□□ -2.4
TNFRSF4P43489 SNORD116-17-201ENST00000383929 92 ntBASIC0.07□□□□□ -2.4
TNFRSF4P43489 SNORD116-15-201ENST00000384445 92 ntBASIC0.07□□□□□ -2.4
TNFRSF4P43489 SNORD116-19-201ENST00000384729 92 ntBASIC0.07□□□□□ -2.4
TNFRSF4P43489 AC006210.1-201ENST00000424882 111 ntBASIC0.07□□□□□ -2.4
TNFRSF4P43489 RNU7-74P-201ENST00000459104 62 ntBASIC0.07□□□□□ -2.4
TNFRSF4P43489 NAMPTP3-201ENST00000569273 224 ntBASIC0.07□□□□□ -2.4
TNFRSF4P43489 MIR3920-201ENST00000581751 86 ntBASIC0.07□□□□□ -2.4
TNFRSF4P43489 AC104408.1-201ENST00000605241 170 ntBASIC0.07□□□□□ -2.4
TNFRSF4P43489 RNA5SP214-201ENST00000363378 118 ntBASIC0.06□□□□□ -2.4
TNFRSF4P43489 MIR610-201ENST00000385139 96 ntBASIC0.06□□□□□ -2.4
TNFRSF4P43489 MIR577-201ENST00000385196 96 ntBASIC0.06□□□□□ -2.4
TNFRSF4P43489 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.06□□□□□ -2.4
TNFRSF4P43489 RNA5SP484-201ENST00000458857 111 ntBASIC0.06□□□□□ -2.4
TNFRSF4P43489 Y_RNA.659-201ENST00000515994 113 ntBASIC0.06□□□□□ -2.4
TNFRSF4P43489 RNU6-1333P-201ENST00000516162 93 ntBASIC0.06□□□□□ -2.4
TNFRSF4P43489 RNA5SP285-201ENST00000516619 119 ntBASIC0.06□□□□□ -2.4
TNFRSF4P43489 MIR5706-201ENST00000579841 80 ntBASIC0.06□□□□□ -2.4
TNFRSF4P43489 TRDV1-202ENST00000621643 102 ntBASIC0.06□□□□□ -2.4
TNFRSF4P43489 SNORD36A-201ENST00000362874 73 ntBASIC0.05□□□□□ -2.4
TNFRSF4P43489 SNORA42.1-201ENST00000363515 137 ntBASIC0.05□□□□□ -2.4
TNFRSF4P43489 RNU6-1163P-201ENST00000364516 107 ntBASIC0.05□□□□□ -2.4
TNFRSF4P43489 Y_RNA.377-201ENST00000365644 108 ntBASIC0.05□□□□□ -2.4
TNFRSF4P43489 SNORD110-201ENST00000408189 75 ntBASIC0.05□□□□□ -2.4
TNFRSF4P43489 AL161932.1-201ENST00000437408 146 ntBASIC0.05□□□□□ -2.4
TNFRSF4P43489 AC068339.1-201ENST00000526965 141 ntBASIC0.05□□□□□ -2.4
TNFRSF4P43489 MIR4694-201ENST00000578534 80 ntBASIC0.05□□□□□ -2.4
TNFRSF4P43489 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.05□□□□□ -2.4
TNFRSF4P43489 SNORD114-5-201ENST00000362928 70 ntBASIC0.04□□□□□ -2.4
TNFRSF4P43489 RNU6-1125P-201ENST00000363601 107 ntBASIC0.04□□□□□ -2.4
TNFRSF4P43489 U8.6-201ENST00000364939 135 ntBASIC0.04□□□□□ -2.4
TNFRSF4P43489 SNORD115-44-201ENST00000365391 82 ntBASIC0.04□□□□□ -2.4
TNFRSF4P43489 RNU6-480P-201ENST00000384332 107 ntBASIC0.04□□□□□ -2.4
TNFRSF4P43489 MIR501-201ENST00000390204 84 ntBASIC0.04□□□□□ -2.4
TNFRSF4P43489 RNY3P2-201ENST00000362918 102 ntBASIC0.03□□□□□ -2.4
TNFRSF4P43489 Y_RNA.78-201ENST00000362970 110 ntBASIC0.03□□□□□ -2.4
TNFRSF4P43489 RNU6-832P-201ENST00000363319 107 ntBASIC0.03□□□□□ -2.4
TNFRSF4P43489 Y_RNA.163-201ENST00000363702 113 ntBASIC0.03□□□□□ -2.4
TNFRSF4P43489 SNORD114-9-201ENST00000364370 72 ntBASIC0.03□□□□□ -2.4
TNFRSF4P43489 RNU6-652P-201ENST00000365488 107 ntBASIC0.03□□□□□ -2.4
TNFRSF4P43489 MIR329-2-201ENST00000385029 84 ntBASIC0.03□□□□□ -2.4
TNFRSF4P43489 RNU6-466P-201ENST00000391224 103 ntBASIC0.03□□□□□ -2.4
TNFRSF4P43489 MIR1295A-201ENST00000408463 79 ntBASIC0.03□□□□□ -2.4
TNFRSF4P43489 Y_RNA.660-201ENST00000516002 120 ntBASIC0.03□□□□□ -2.4
TNFRSF4P43489 RNU6-957P-201ENST00000363652 99 ntBASIC0.02□□□□□ -2.41
TNFRSF4P43489 Y_RNA.178-201ENST00000363832 102 ntBASIC0.02□□□□□ -2.41
TNFRSF4P43489 RNU6-880P-201ENST00000384526 107 ntBASIC0.02□□□□□ -2.41
TNFRSF4P43489 RNU6-959P-201ENST00000384671 107 ntBASIC0.02□□□□□ -2.41
TNFRSF4P43489 MIR593-201ENST00000384856 100 ntBASIC0.02□□□□□ -2.41
TNFRSF4P43489 MIR181B2-201ENST00000385004 89 ntBASIC0.02□□□□□ -2.41
TNFRSF4P43489 TMSB4XP3-201ENST00000445144 114 ntBASIC0.02□□□□□ -2.41
TNFRSF4P43489 AC141557.1-201ENST00000540982 400 ntBASIC0.02□□□□□ -2.41
TNFRSF4P43489 MIR5009-201ENST00000578736 100 ntBASIC0.02□□□□□ -2.41
TNFRSF4P43489 uc_338.28-201ENST00000612082 187 ntBASIC0.02□□□□□ -2.41
TNFRSF4P43489 U6.100-201ENST00000636230 99 ntBASIC0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 166.6 ms