Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 Y_RNA.377-201ENST00000365644 108 ntBASIC0.32□□□□□ -2.36
SOX3P41225 SNORA50A-201ENST00000384225 134 ntBASIC0.32□□□□□ -2.36
SOX3P41225 MIR193B-201ENST00000384907 83 ntBASIC0.32□□□□□ -2.36
SOX3P41225 SPINT5P-201ENST00000448174 155 ntBASIC0.32□□□□□ -2.36
SOX3P41225 AC097635.1-201ENST00000450678 155 ntBASIC0.32□□□□□ -2.36
SOX3P41225 MTND5P40-201ENST00000559945 246 ntBASIC0.32□□□□□ -2.36
SOX3P41225 MIR4694-201ENST00000578534 80 ntBASIC0.32□□□□□ -2.36
SOX3P41225 MIR4752-201ENST00000579672 72 ntBASIC0.32□□□□□ -2.36
SOX3P41225 U2.22-201ENST00000636441 106 ntBASIC0.32□□□□□ -2.36
SOX3P41225 RNU6-1014P-201ENST00000383940 103 ntBASIC0.31□□□□□ -2.36
SOX3P41225 RNU6-880P-201ENST00000384526 107 ntBASIC0.31□□□□□ -2.36
SOX3P41225 RNU6-1064P-201ENST00000410626 104 ntBASIC0.31□□□□□ -2.36
SOX3P41225 RNU2-51P-201ENST00000410708 197 ntBASIC0.31□□□□□ -2.36
SOX3P41225 AC109327.2-201ENST00000448339 378 ntBASIC0.31□□□□□ -2.36
SOX3P41225 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.31□□□□□ -2.36
SOX3P41225 Y_RNA.809-201ENST00000516058 95 ntBASIC0.31□□□□□ -2.36
SOX3P41225 RNU6-589P-201ENST00000516485 107 ntBASIC0.31□□□□□ -2.36
SOX3P41225 MIR1273G-201ENST00000577677 100 ntBASIC0.31□□□□□ -2.36
SOX3P41225 RNU6-90P-201ENST00000606352 106 ntBASIC0.31□□□□□ -2.36
SOX3P41225 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.31□□□□□ -2.36
SOX3P41225 RNY3P2-201ENST00000362918 102 ntBASIC0.3□□□□□ -2.36
SOX3P41225 RNU6-1260P-201ENST00000362944 107 ntBASIC0.3□□□□□ -2.36
SOX3P41225 RNU6-524P-201ENST00000384270 107 ntBASIC0.3□□□□□ -2.36
SOX3P41225 RNU2-59P-201ENST00000410482 191 ntBASIC0.3□□□□□ -2.36
SOX3P41225 RNU7-104P-201ENST00000459398 79 ntBASIC0.3□□□□□ -2.36
SOX3P41225 RNA5SP227-201ENST00000516184 113 ntBASIC0.3□□□□□ -2.36
SOX3P41225 RNU6-1232P-201ENST00000516299 86 ntBASIC0.3□□□□□ -2.36
SOX3P41225 RNU6-313P-201ENST00000516317 112 ntBASIC0.3□□□□□ -2.36
SOX3P41225 RNU6-1265P-201ENST00000516342 103 ntBASIC0.3□□□□□ -2.36
SOX3P41225 RNU6-62P-201ENST00000516526 102 ntBASIC0.3□□□□□ -2.36
SOX3P41225 MIR548AG2-201ENST00000581228 64 ntBASIC0.3□□□□□ -2.36
SOX3P41225 Y_RNA.205-201ENST00000364128 113 ntBASIC0.29□□□□□ -2.36
SOX3P41225 Y_RNA.467-201ENST00000384297 102 ntBASIC0.29□□□□□ -2.36
SOX3P41225 MIR181B2-201ENST00000385004 89 ntBASIC0.29□□□□□ -2.36
SOX3P41225 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.29□□□□□ -2.36
SOX3P41225 RNU6-537P-201ENST00000517277 103 ntBASIC0.29□□□□□ -2.36
SOX3P41225 RNU6-86P-201ENST00000606534 107 ntBASIC0.29□□□□□ -2.36
SOX3P41225 MIR6779-201ENST00000617283 64 ntBASIC0.29□□□□□ -2.36
SOX3P41225 MIR924-201ENST00000638017 53 ntBASIC0.29□□□□□ -2.36
SOX3P41225 Y_RNA.57-201ENST00000362806 113 ntBASIC0.28□□□□□ -2.36
SOX3P41225 RNU6-1244P-201ENST00000363614 108 ntBASIC0.28□□□□□ -2.36
SOX3P41225 RNU6-1327P-201ENST00000365302 105 ntBASIC0.28□□□□□ -2.36
SOX3P41225 RNU6-1126P-201ENST00000384002 107 ntBASIC0.28□□□□□ -2.36
SOX3P41225 RNU6-106P-201ENST00000384405 107 ntBASIC0.28□□□□□ -2.36
SOX3P41225 SNORD41.1-201ENST00000391000 69 ntBASIC0.28□□□□□ -2.36
SOX3P41225 RNU6-269P-201ENST00000391077 97 ntBASIC0.28□□□□□ -2.36
SOX3P41225 RNU6-554P-201ENST00000410466 106 ntBASIC0.28□□□□□ -2.36
SOX3P41225 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.28□□□□□ -2.36
SOX3P41225 MIR3920-201ENST00000581751 86 ntBASIC0.28□□□□□ -2.36
SOX3P41225 MIR4777-201ENST00000583710 86 ntBASIC0.28□□□□□ -2.36
SOX3P41225 AC012531.4-201ENST00000616509 177 ntBASIC0.28□□□□□ -2.36
SOX3P41225 AL162376.1-201ENST00000624117 175 ntBASIC0.28□□□□□ -2.36
SOX3P41225 RNU6-1290P-201ENST00000362957 109 ntBASIC0.27□□□□□ -2.37
SOX3P41225 RNU6-957P-201ENST00000363652 99 ntBASIC0.27□□□□□ -2.37
SOX3P41225 RNU6-815P-201ENST00000384080 113 ntBASIC0.27□□□□□ -2.37
SOX3P41225 SNORD38.2-201ENST00000384470 69 ntBASIC0.27□□□□□ -2.37
SOX3P41225 AC108740.1-201ENST00000498629 225 ntBASIC0.27□□□□□ -2.37
SOX3P41225 RNU6-795P-201ENST00000516323 103 ntBASIC0.27□□□□□ -2.37
SOX3P41225 AC141557.1-201ENST00000540982 400 ntBASIC0.27□□□□□ -2.37
SOX3P41225 SNORA70.25-201ENST00000612741 95 ntBASIC0.27□□□□□ -2.37
SOX3P41225 AC025521.1-201ENST00000621624 286 ntBASIC0.27□□□□□ -2.37
SOX3P41225 MIR590-201ENST00000385008 97 ntBASIC0.26□□□□□ -2.37
SOX3P41225 RNU6-1254P-201ENST00000391266 104 ntBASIC0.26□□□□□ -2.37
SOX3P41225 snoU13.11-201ENST00000459219 104 ntBASIC0.26□□□□□ -2.37
SOX3P41225 Y_RNA.659-201ENST00000515994 113 ntBASIC0.26□□□□□ -2.37
SOX3P41225 RNU6-904P-201ENST00000516206 101 ntBASIC0.26□□□□□ -2.37
SOX3P41225 RNA5SP134-201ENST00000516492 96 ntBASIC0.26□□□□□ -2.37
SOX3P41225 RNU6-789P-201ENST00000517105 102 ntBASIC0.26□□□□□ -2.37
SOX3P41225 uc_338.28-201ENST00000612082 187 ntBASIC0.26□□□□□ -2.37
SOX3P41225 U6.100-201ENST00000636230 99 ntBASIC0.26□□□□□ -2.37
SOX3P41225 RNU6-1056P-201ENST00000383996 107 ntBASIC0.25□□□□□ -2.37
SOX3P41225 Y_RNA.423-201ENST00000384057 113 ntBASIC0.25□□□□□ -2.37
SOX3P41225 RNY4P18-201ENST00000391107 89 ntBASIC0.25□□□□□ -2.37
SOX3P41225 RNU6-848P-201ENST00000515948 107 ntBASIC0.25□□□□□ -2.37
SOX3P41225 RNU6-617P-201ENST00000516147 107 ntBASIC0.25□□□□□ -2.37
SOX3P41225 RNU6-473P-201ENST00000516164 107 ntBASIC0.25□□□□□ -2.37
SOX3P41225 RNU6-1049P-201ENST00000516414 107 ntBASIC0.25□□□□□ -2.37
SOX3P41225 Y_RNA.709-201ENST00000516952 92 ntBASIC0.25□□□□□ -2.37
SOX3P41225 AC067863.3-201ENST00000624172 122 ntBASIC0.25□□□□□ -2.37
SOX3P41225 RNU6-834P-201ENST00000362367 110 ntBASIC0.24□□□□□ -2.37
SOX3P41225 Y_RNA.95-201ENST00000363079 95 ntBASIC0.24□□□□□ -2.37
SOX3P41225 RNA5SP457-201ENST00000363657 124 ntBASIC0.24□□□□□ -2.37
SOX3P41225 Y_RNA.163-201ENST00000363702 113 ntBASIC0.24□□□□□ -2.37
SOX3P41225 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.24□□□□□ -2.37
SOX3P41225 RNU6-75P-201ENST00000515944 104 ntBASIC0.24□□□□□ -2.37
SOX3P41225 RNU6-109P-201ENST00000516364 107 ntBASIC0.24□□□□□ -2.37
SOX3P41225 RNU6-184P-201ENST00000516514 107 ntBASIC0.24□□□□□ -2.37
SOX3P41225 TRDV1-202ENST00000621643 102 ntBASIC0.24□□□□□ -2.37
SOX3P41225 MIR330-201ENST00000362196 94 ntBASIC0.23□□□□□ -2.37
SOX3P41225 Y_RNA.78-201ENST00000362970 110 ntBASIC0.23□□□□□ -2.37
SOX3P41225 RNA5SP62-201ENST00000363457 110 ntBASIC0.23□□□□□ -2.37
SOX3P41225 RNU6-1325P-201ENST00000364905 105 ntBASIC0.23□□□□□ -2.37
SOX3P41225 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.23□□□□□ -2.37
SOX3P41225 RNU6-412P-201ENST00000516434 106 ntBASIC0.23□□□□□ -2.37
SOX3P41225 AL513043.2-201ENST00000573941 143 ntBASIC0.23□□□□□ -2.37
SOX3P41225 AC103810.7-201ENST00000607821 91 ntBASIC0.23□□□□□ -2.37
SOX3P41225 Y_RNA.273-201ENST00000364703 102 ntBASIC0.22□□□□□ -2.37
SOX3P41225 SNORA2A-201ENST00000383885 135 ntBASIC0.22□□□□□ -2.37
SOX3P41225 SNORD20-201ENST00000384550 80 ntBASIC0.22□□□□□ -2.37
SOX3P41225 RNU6-243P-201ENST00000391140 107 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 176.5 ms