Protein–RNA interactions for Protein: Q9UQ88

CDK11A, Cyclin-dependent kinase 11A, humanhuman

Predicted RBP Predictions only

Length 783 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK11AQ9UQ88 MIR548I2-201ENST00000408348 149 ntBASIC0.99□□□□□ -2.25
CDK11AQ9UQ88 AC092628.1-201ENST00000436250 252 ntBASIC0.98□□□□□ -2.25
CDK11AQ9UQ88 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.98□□□□□ -2.25
CDK11AQ9UQ88 MTND5P40-201ENST00000559945 246 ntBASIC0.98□□□□□ -2.25
CDK11AQ9UQ88 MIR5009-201ENST00000578736 100 ntBASIC0.98□□□□□ -2.25
CDK11AQ9UQ88 uc_338.16-201ENST00000621804 95 ntBASIC0.98□□□□□ -2.25
CDK11AQ9UQ88 Y_RNA.35-201ENST00000362601 101 ntBASIC0.97□□□□□ -2.25
CDK11AQ9UQ88 SNORD38.1-201ENST00000363863 68 ntBASIC0.97□□□□□ -2.25
CDK11AQ9UQ88 RNU6-571P-201ENST00000384128 107 ntBASIC0.97□□□□□ -2.25
CDK11AQ9UQ88 MIR635-201ENST00000384830 98 ntBASIC0.97□□□□□ -2.25
CDK11AQ9UQ88 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.97□□□□□ -2.25
CDK11AQ9UQ88 AC096720.1-201ENST00000604441 183 ntBASIC0.97□□□□□ -2.25
CDK11AQ9UQ88 U8.6-201ENST00000364939 135 ntBASIC0.96□□□□□ -2.26
CDK11AQ9UQ88 SNORA36.2-201ENST00000384004 127 ntBASIC0.96□□□□□ -2.26
CDK11AQ9UQ88 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.96□□□□□ -2.26
CDK11AQ9UQ88 AC138869.1-201ENST00000568623 124 ntBASIC0.96□□□□□ -2.26
CDK11AQ9UQ88 MIR4694-201ENST00000578534 80 ntBASIC0.96□□□□□ -2.26
CDK11AQ9UQ88 AL442128.1-201ENST00000615151 90 ntBASIC0.96□□□□□ -2.26
CDK11AQ9UQ88 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.96□□□□□ -2.26
CDK11AQ9UQ88 Y_RNA.629-201ENST00000411368 105 ntBASIC0.95□□□□□ -2.26
CDK11AQ9UQ88 RNA5SP121-201ENST00000516537 101 ntBASIC0.95□□□□□ -2.26
CDK11AQ9UQ88 SNORA31.14-201ENST00000516728 116 ntBASIC0.95□□□□□ -2.26
CDK11AQ9UQ88 Y_RNA.32-201ENST00000362589 110 ntBASIC0.94□□□□□ -2.26
CDK11AQ9UQ88 Y_RNA.377-201ENST00000365644 108 ntBASIC0.94□□□□□ -2.26
CDK11AQ9UQ88 RNU6-1201P-201ENST00000384227 107 ntBASIC0.94□□□□□ -2.26
CDK11AQ9UQ88 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.94□□□□□ -2.26
CDK11AQ9UQ88 BX276092.1-201ENST00000427368 251 ntBASIC0.94□□□□□ -2.26
CDK11AQ9UQ88 MIR3678-201ENST00000578455 94 ntBASIC0.94□□□□□ -2.26
CDK11AQ9UQ88 RNU6-90P-201ENST00000606352 106 ntBASIC0.94□□□□□ -2.26
CDK11AQ9UQ88 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.93□□□□□ -2.26
CDK11AQ9UQ88 RNU6-1107P-201ENST00000364817 104 ntBASIC0.93□□□□□ -2.26
CDK11AQ9UQ88 Y_RNA.323-201ENST00000365157 109 ntBASIC0.93□□□□□ -2.26
CDK11AQ9UQ88 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.93□□□□□ -2.26
CDK11AQ9UQ88 AL353813.1-201ENST00000440700 253 ntBASIC0.92□□□□□ -2.26
CDK11AQ9UQ88 SPINT5P-201ENST00000448174 155 ntBASIC0.92□□□□□ -2.26
CDK11AQ9UQ88 MIR6129-201ENST00000616087 109 ntBASIC0.92□□□□□ -2.26
CDK11AQ9UQ88 AC243829.3-201ENST00000622177 108 ntBASIC0.92□□□□□ -2.26
CDK11AQ9UQ88 RNY3P2-201ENST00000362918 102 ntBASIC0.91□□□□□ -2.26
CDK11AQ9UQ88 RNA5SP499-201ENST00000363982 119 ntBASIC0.91□□□□□ -2.26
CDK11AQ9UQ88 MIR140-201ENST00000385282 100 ntBASIC0.91□□□□□ -2.26
CDK11AQ9UQ88 RNU6-1006P-201ENST00000516998 103 ntBASIC0.91□□□□□ -2.26
CDK11AQ9UQ88 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.91□□□□□ -2.26
CDK11AQ9UQ88 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
CDK11AQ9UQ88 RNU6-1229P-201ENST00000364295 107 ntBASIC0.9□□□□□ -2.27
CDK11AQ9UQ88 RNU6-1014P-201ENST00000383940 103 ntBASIC0.9□□□□□ -2.27
CDK11AQ9UQ88 MIR577-201ENST00000385196 96 ntBASIC0.9□□□□□ -2.27
CDK11AQ9UQ88 MIR644A-201ENST00000385262 94 ntBASIC0.9□□□□□ -2.27
CDK11AQ9UQ88 MIR548G-201ENST00000408442 89 ntBASIC0.9□□□□□ -2.27
CDK11AQ9UQ88 SNRPGP12-201ENST00000449481 213 ntBASIC0.9□□□□□ -2.27
CDK11AQ9UQ88 RNU4-54P-201ENST00000516428 129 ntBASIC0.9□□□□□ -2.27
CDK11AQ9UQ88 Y_RNA.10-201ENST00000362371 110 ntBASIC0.89□□□□□ -2.27
CDK11AQ9UQ88 RNU6-170P-201ENST00000362832 104 ntBASIC0.89□□□□□ -2.27
CDK11AQ9UQ88 RNA5SP457-201ENST00000363657 124 ntBASIC0.89□□□□□ -2.27
CDK11AQ9UQ88 Y_RNA.291-201ENST00000364886 113 ntBASIC0.89□□□□□ -2.27
CDK11AQ9UQ88 RNU6-850P-201ENST00000516934 103 ntBASIC0.89□□□□□ -2.27
CDK11AQ9UQ88 AC018659.1-201ENST00000551083 169 ntBASIC0.89□□□□□ -2.27
CDK11AQ9UQ88 MIR924-201ENST00000638017 53 ntBASIC0.89□□□□□ -2.27
CDK11AQ9UQ88 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
CDK11AQ9UQ88 RNU6-832P-201ENST00000363319 107 ntBASIC0.88□□□□□ -2.27
CDK11AQ9UQ88 Y_RNA.342-201ENST00000365352 113 ntBASIC0.88□□□□□ -2.27
CDK11AQ9UQ88 AC098934.3-201ENST00000430450 190 ntBASIC0.88□□□□□ -2.27
CDK11AQ9UQ88 AC141557.1-201ENST00000540982 400 ntBASIC0.88□□□□□ -2.27
CDK11AQ9UQ88 RNU4-36P-201ENST00000364294 144 ntBASIC0.87□□□□□ -2.27
CDK11AQ9UQ88 RNU6-945P-201ENST00000383947 107 ntBASIC0.87□□□□□ -2.27
CDK11AQ9UQ88 AC244505.6-201ENST00000452829 130 ntBASIC0.87□□□□□ -2.27
CDK11AQ9UQ88 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.87□□□□□ -2.27
CDK11AQ9UQ88 MIR4639-201ENST00000584938 69 ntBASIC0.87□□□□□ -2.27
CDK11AQ9UQ88 RNU6-1099P-201ENST00000363533 107 ntBASIC0.86□□□□□ -2.27
CDK11AQ9UQ88 RNA5SP245-201ENST00000364239 121 ntBASIC0.86□□□□□ -2.27
CDK11AQ9UQ88 MIR1302-5-201ENST00000408164 150 ntBASIC0.86□□□□□ -2.27
CDK11AQ9UQ88 TRAJ51-201ENST00000504127 63 ntBASIC0.86□□□□□ -2.27
CDK11AQ9UQ88 RNU6-589P-201ENST00000516485 107 ntBASIC0.86□□□□□ -2.27
CDK11AQ9UQ88 RNU6-1290P-201ENST00000362957 109 ntBASIC0.85□□□□□ -2.27
CDK11AQ9UQ88 SNORD18A-201ENST00000363753 72 ntBASIC0.85□□□□□ -2.27
CDK11AQ9UQ88 MIR519A1-201ENST00000385257 85 ntBASIC0.85□□□□□ -2.27
CDK11AQ9UQ88 SNORD63B-201ENST00000411005 70 ntBASIC0.85□□□□□ -2.27
CDK11AQ9UQ88 AC097635.1-201ENST00000450678 155 ntBASIC0.85□□□□□ -2.27
CDK11AQ9UQ88 RNA5SP94-201ENST00000516917 108 ntBASIC0.85□□□□□ -2.27
CDK11AQ9UQ88 Y_RNA.247-201ENST00000364500 92 ntBASIC0.84□□□□□ -2.27
CDK11AQ9UQ88 Y_RNA.567-201ENST00000384736 106 ntBASIC0.84□□□□□ -2.27
CDK11AQ9UQ88 Y_RNA.659-201ENST00000515994 113 ntBASIC0.84□□□□□ -2.27
CDK11AQ9UQ88 Y_RNA.709-201ENST00000516952 92 ntBASIC0.84□□□□□ -2.27
CDK11AQ9UQ88 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.84□□□□□ -2.27
CDK11AQ9UQ88 Y_RNA.173-201ENST00000363776 113 ntBASIC0.83□□□□□ -2.28
CDK11AQ9UQ88 SNORD45B-201ENST00000364617 72 ntBASIC0.83□□□□□ -2.28
CDK11AQ9UQ88 RNU6-1325P-201ENST00000364905 105 ntBASIC0.83□□□□□ -2.28
CDK11AQ9UQ88 AC092634.7-201ENST00000621022 103 ntBASIC0.83□□□□□ -2.28
CDK11AQ9UQ88 MIR5087-201ENST00000635826 76 ntBASIC0.83□□□□□ -2.28
CDK11AQ9UQ88 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.82□□□□□ -2.28
CDK11AQ9UQ88 SNORD28-201ENST00000384706 75 ntBASIC0.82□□□□□ -2.28
CDK11AQ9UQ88 MIR599-201ENST00000385069 95 ntBASIC0.82□□□□□ -2.28
CDK11AQ9UQ88 RNU6-229P-201ENST00000516614 102 ntBASIC0.82□□□□□ -2.28
CDK11AQ9UQ88 RNA5SP330-201ENST00000517096 96 ntBASIC0.82□□□□□ -2.28
CDK11AQ9UQ88 MIR4439-201ENST00000583746 80 ntBASIC0.82□□□□□ -2.28
CDK11AQ9UQ88 MIR330-201ENST00000362196 94 ntBASIC0.81□□□□□ -2.28
CDK11AQ9UQ88 Y_RNA.57-201ENST00000362806 113 ntBASIC0.81□□□□□ -2.28
CDK11AQ9UQ88 Y_RNA.78-201ENST00000362970 110 ntBASIC0.81□□□□□ -2.28
CDK11AQ9UQ88 SNORD115-24-201ENST00000363528 82 ntBASIC0.81□□□□□ -2.28
CDK11AQ9UQ88 RNU6-1125P-201ENST00000363601 107 ntBASIC0.81□□□□□ -2.28
CDK11AQ9UQ88 Y_RNA.163-201ENST00000363702 113 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms