Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 SNORD114-9-201ENST00000364370 72 ntBASIC0.06□□□□□ -2.4
CPSF3Q9UKF6 RNU6-571P-201ENST00000384128 107 ntBASIC0.06□□□□□ -2.4
CPSF3Q9UKF6 Y_RNA.555-201ENST00000384673 110 ntBASIC0.06□□□□□ -2.4
CPSF3Q9UKF6 SNORD41.1-201ENST00000391000 69 ntBASIC0.06□□□□□ -2.4
CPSF3Q9UKF6 RNU6-426P-201ENST00000516464 97 ntBASIC0.06□□□□□ -2.4
CPSF3Q9UKF6 AC104408.1-201ENST00000605241 170 ntBASIC0.06□□□□□ -2.4
CPSF3Q9UKF6 SNORA70.25-201ENST00000612741 95 ntBASIC0.06□□□□□ -2.4
CPSF3Q9UKF6 RNA5SP214-201ENST00000363378 118 ntBASIC0.05□□□□□ -2.4
CPSF3Q9UKF6 Y_RNA.488-201ENST00000384403 102 ntBASIC0.05□□□□□ -2.4
CPSF3Q9UKF6 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.05□□□□□ -2.4
CPSF3Q9UKF6 RNU6-1234P-201ENST00000516877 103 ntBASIC0.05□□□□□ -2.4
CPSF3Q9UKF6 RNU6-794P-201ENST00000517261 64 ntBASIC0.05□□□□□ -2.4
CPSF3Q9UKF6 Y_RNA.170-201ENST00000363746 110 ntBASIC0.04□□□□□ -2.4
CPSF3Q9UKF6 RNU6-269P-201ENST00000391077 97 ntBASIC0.04□□□□□ -2.4
CPSF3Q9UKF6 Y_RNA.809-201ENST00000516058 95 ntBASIC0.04□□□□□ -2.4
CPSF3Q9UKF6 RNU6-850P-201ENST00000516934 103 ntBASIC0.04□□□□□ -2.4
CPSF3Q9UKF6 MIR4768-201ENST00000585270 74 ntBASIC0.04□□□□□ -2.4
CPSF3Q9UKF6 MIR499B-201ENST00000636498 73 ntBASIC0.04□□□□□ -2.4
CPSF3Q9UKF6 Y_RNA.466-201ENST00000384294 113 ntBASIC0.03□□□□□ -2.4
CPSF3Q9UKF6 Y_RNA.528-201ENST00000384575 108 ntBASIC0.03□□□□□ -2.4
CPSF3Q9UKF6 MIR548D2-201ENST00000384955 97 ntBASIC0.03□□□□□ -2.4
CPSF3Q9UKF6 MIR759-201ENST00000390224 91 ntBASIC0.03□□□□□ -2.4
CPSF3Q9UKF6 MIR1197-201ENST00000408818 88 ntBASIC0.03□□□□□ -2.4
CPSF3Q9UKF6 RNU7-106P-201ENST00000459514 67 ntBASIC0.03□□□□□ -2.4
CPSF3Q9UKF6 RNU6-235P-201ENST00000362644 107 ntBASIC0.02□□□□□ -2.41
CPSF3Q9UKF6 MIR643-201ENST00000385267 97 ntBASIC0.02□□□□□ -2.41
CPSF3Q9UKF6 RNA5SP63-201ENST00000391225 112 ntBASIC0.02□□□□□ -2.41
CPSF3Q9UKF6 RNU7-200P-201ENST00000516105 62 ntBASIC0.02□□□□□ -2.41
CPSF3Q9UKF6 RNU6-1260P-201ENST00000362944 107 ntBASIC0.01□□□□□ -2.41
CPSF3Q9UKF6 Y_RNA.180-201ENST00000363867 113 ntBASIC0.01□□□□□ -2.41
CPSF3Q9UKF6 Y_RNA.342-201ENST00000365352 113 ntBASIC0.01□□□□□ -2.41
CPSF3Q9UKF6 MIR501-201ENST00000390204 84 ntBASIC0.01□□□□□ -2.41
CPSF3Q9UKF6 MIR4667-201ENST00000578933 66 ntBASIC0.01□□□□□ -2.41
CPSF3Q9UKF6 Y_RNA.35-201ENST00000362601 101 ntBASIC0□□□□□ -2.41
CPSF3Q9UKF6 Y_RNA.323-201ENST00000365157 109 ntBASIC0□□□□□ -2.41
CPSF3Q9UKF6 RNU6-524P-201ENST00000384270 107 ntBASIC0□□□□□ -2.41
CPSF3Q9UKF6 Y_RNA.464-201ENST00000384282 110 ntBASIC0□□□□□ -2.41
CPSF3Q9UKF6 MIR548H2-201ENST00000408874 88 ntBASIC0□□□□□ -2.41
CPSF3Q9UKF6 SNORA7.5-201ENST00000410672 110 ntBASIC0□□□□□ -2.41
CPSF3Q9UKF6 MTND4LP9-201ENST00000427694 174 ntBASIC0□□□□□ -2.41
CPSF3Q9UKF6 RNU6-1212P-201ENST00000517023 104 ntBASIC0□□□□□ -2.41
CPSF3Q9UKF6 MIR5706-201ENST00000579841 80 ntBASIC0□□□□□ -2.41
CPSF3Q9UKF6 MIR3920-201ENST00000581751 86 ntBASIC0□□□□□ -2.41
CPSF3Q9UKF6 uc_338.28-201ENST00000612082 187 ntBASIC0□□□□□ -2.41
CPSF3Q9UKF6 MIR2909-201ENST00000617113 69 ntBASIC0□□□□□ -2.41
CPSF3Q9UKF6 MIR371B-201ENST00000638082 66 ntBASIC0□□□□□ -2.41
CPSF3Q9UKF6 SNORD114-5-201ENST00000362928 70 ntBASIC-0.01□□□□□ -2.41
CPSF3Q9UKF6 SNORD58C-201ENST00000365223 64 ntBASIC-0.01□□□□□ -2.41
CPSF3Q9UKF6 MIR7-2-201ENST00000384970 110 ntBASIC-0.01□□□□□ -2.41
CPSF3Q9UKF6 AL353813.1-201ENST00000440700 253 ntBASIC-0.01□□□□□ -2.41
CPSF3Q9UKF6 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.01□□□□□ -2.41
CPSF3Q9UKF6 RNU6-1006P-201ENST00000516998 103 ntBASIC-0.01□□□□□ -2.41
CPSF3Q9UKF6 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-0.01□□□□□ -2.41
CPSF3Q9UKF6 AC073869.9-201ENST00000641610 120 ntBASIC-0.01□□□□□ -2.41
CPSF3Q9UKF6 Y_RNA.344-201ENST00000365381 112 ntBASIC-0.02□□□□□ -2.41
CPSF3Q9UKF6 SNORD38.2-201ENST00000384470 69 ntBASIC-0.02□□□□□ -2.41
CPSF3Q9UKF6 MIR516A2-201ENST00000384888 90 ntBASIC-0.02□□□□□ -2.41
CPSF3Q9UKF6 MIR516A1-201ENST00000385033 90 ntBASIC-0.02□□□□□ -2.41
CPSF3Q9UKF6 RNU6-782P-201ENST00000516852 104 ntBASIC-0.02□□□□□ -2.41
CPSF3Q9UKF6 RNU6-255P-201ENST00000516957 105 ntBASIC-0.02□□□□□ -2.41
CPSF3Q9UKF6 AC025166.1-201ENST00000612411 163 ntBASIC-0.02□□□□□ -2.41
CPSF3Q9UKF6 RNU6-1313P-201ENST00000362622 102 ntBASIC-0.03□□□□□ -2.41
CPSF3Q9UKF6 RNU6-363P-201ENST00000362895 105 ntBASIC-0.03□□□□□ -2.41
CPSF3Q9UKF6 SNORD114-16-201ENST00000363044 70 ntBASIC-0.03□□□□□ -2.41
CPSF3Q9UKF6 RNA5SP325-201ENST00000363756 130 ntBASIC-0.03□□□□□ -2.41
CPSF3Q9UKF6 MIR610-201ENST00000385139 96 ntBASIC-0.03□□□□□ -2.41
CPSF3Q9UKF6 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.03□□□□□ -2.41
CPSF3Q9UKF6 RNU7-13P-201ENST00000516413 62 ntBASIC-0.03□□□□□ -2.41
CPSF3Q9UKF6 RNU6-1061P-201ENST00000516530 99 ntBASIC-0.03□□□□□ -2.41
CPSF3Q9UKF6 MIR548AD-201ENST00000584780 82 ntBASIC-0.03□□□□□ -2.41
CPSF3Q9UKF6 Y_RNA.247-201ENST00000364500 92 ntBASIC-0.04□□□□□ -2.42
CPSF3Q9UKF6 MIR593-201ENST00000384856 100 ntBASIC-0.04□□□□□ -2.42
CPSF3Q9UKF6 RNA5SP484-201ENST00000458857 111 ntBASIC-0.04□□□□□ -2.42
CPSF3Q9UKF6 MTND5P40-201ENST00000559945 246 ntBASIC-0.04□□□□□ -2.42
CPSF3Q9UKF6 MIR5190-201ENST00000581537 80 ntBASIC-0.04□□□□□ -2.42
CPSF3Q9UKF6 MTND5P18-201ENST00000445624 1801 ntBASIC-0.05□□□□□ -2.42
CPSF3Q9UKF6 Y_RNA.506-201ENST00000384494 102 ntBASIC-0.05□□□□□ -2.42
CPSF3Q9UKF6 Y_RNA.568-201ENST00000384742 113 ntBASIC-0.05□□□□□ -2.42
CPSF3Q9UKF6 MIR145-201ENST00000384967 88 ntBASIC-0.05□□□□□ -2.42
CPSF3Q9UKF6 RNU6-257P-201ENST00000410238 98 ntBASIC-0.05□□□□□ -2.42
CPSF3Q9UKF6 RNU6-346P-201ENST00000516288 111 ntBASIC-0.05□□□□□ -2.42
CPSF3Q9UKF6 NAMPTP3-201ENST00000569273 224 ntBASIC-0.05□□□□□ -2.42
CPSF3Q9UKF6 MIR4290-201ENST00000583807 95 ntBASIC-0.05□□□□□ -2.42
CPSF3Q9UKF6 AL512310.12-203ENST00000640543 90 ntBASIC-0.05□□□□□ -2.42
CPSF3Q9UKF6 Y_RNA.85-201ENST00000363014 111 ntBASIC-0.06□□□□□ -2.42
CPSF3Q9UKF6 RNU6-161P-201ENST00000363051 106 ntBASIC-0.06□□□□□ -2.42
CPSF3Q9UKF6 SNORA40-201ENST00000388090 126 ntBASIC-0.06□□□□□ -2.42
CPSF3Q9UKF6 Y_RNA.630-201ENST00000411370 108 ntBASIC-0.06□□□□□ -2.42
CPSF3Q9UKF6 AC006210.1-201ENST00000424882 111 ntBASIC-0.06□□□□□ -2.42
CPSF3Q9UKF6 U7.6-201ENST00000610841 64 ntBASIC-0.06□□□□□ -2.42
CPSF3Q9UKF6 RNU6-509P-201ENST00000363519 107 ntBASIC-0.07□□□□□ -2.42
CPSF3Q9UKF6 RNY4P6-201ENST00000363667 96 ntBASIC-0.07□□□□□ -2.42
CPSF3Q9UKF6 RNU6-772P-201ENST00000516042 105 ntBASIC-0.07□□□□□ -2.42
CPSF3Q9UKF6 MIR548AG2-201ENST00000581228 64 ntBASIC-0.07□□□□□ -2.42
CPSF3Q9UKF6 MIR4677-201ENST00000584153 80 ntBASIC-0.07□□□□□ -2.42
CPSF3Q9UKF6 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-0.07□□□□□ -2.42
CPSF3Q9UKF6 Y_RNA.115-201ENST00000363272 98 ntBASIC-0.08□□□□□ -2.42
CPSF3Q9UKF6 Y_RNA.155-201ENST00000363632 101 ntBASIC-0.08□□□□□ -2.42
CPSF3Q9UKF6 RNA5SP457-201ENST00000363657 124 ntBASIC-0.08□□□□□ -2.42
CPSF3Q9UKF6 SNORD38.1-201ENST00000363863 68 ntBASIC-0.08□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 187 ms