Protein–RNA interactions for Protein: Q9NVE5

USP40, Ubiquitin carboxyl-terminal hydrolase 40, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP40Q9NVE5 MIR6504-201ENST00000613520 61 ntBASIC1.7□□□□□ -2.14
USP40Q9NVE5 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
USP40Q9NVE5 MIR302D-201ENST00000362275 68 ntBASIC1.69□□□□□ -2.14
USP40Q9NVE5 RNU6-396P-201ENST00000365369 105 ntBASIC1.69□□□□□ -2.14
USP40Q9NVE5 SNORA72.6-201ENST00000384520 129 ntBASIC1.69□□□□□ -2.14
USP40Q9NVE5 MIR489-201ENST00000384923 84 ntBASIC1.69□□□□□ -2.14
USP40Q9NVE5 snoU13.21-201ENST00000459368 105 ntBASIC1.69□□□□□ -2.14
USP40Q9NVE5 SNORA18.5-201ENST00000516616 101 ntBASIC1.69□□□□□ -2.14
USP40Q9NVE5 MIR4491-201ENST00000581087 68 ntBASIC1.69□□□□□ -2.14
USP40Q9NVE5 AL353770.2-201ENST00000620024 78 ntBASIC1.69□□□□□ -2.14
USP40Q9NVE5 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
USP40Q9NVE5 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.68□□□□□ -2.14
USP40Q9NVE5 RNU6-811P-201ENST00000384069 107 ntBASIC1.68□□□□□ -2.14
USP40Q9NVE5 Y_RNA.545-201ENST00000384652 105 ntBASIC1.68□□□□□ -2.14
USP40Q9NVE5 MT-TN-201ENST00000387400 73 ntBASIC1.68□□□□□ -2.14
USP40Q9NVE5 RPL30P7-201ENST00000479312 323 ntBASIC1.68□□□□□ -2.14
USP40Q9NVE5 AC104996.3-201ENST00000590718 94 ntBASIC1.68□□□□□ -2.14
USP40Q9NVE5 GHRLOS.1-201ENST00000610995 70 ntBASIC1.68□□□□□ -2.14
USP40Q9NVE5 MIRLET7F1-201ENST00000362202 87 ntBASIC1.67□□□□□ -2.14
USP40Q9NVE5 RNU6-1094P-201ENST00000362416 104 ntBASIC1.67□□□□□ -2.14
USP40Q9NVE5 RNU6-957P-201ENST00000363652 99 ntBASIC1.67□□□□□ -2.14
USP40Q9NVE5 RNU6-686P-201ENST00000364839 107 ntBASIC1.67□□□□□ -2.14
USP40Q9NVE5 RNU6-997P-201ENST00000384725 107 ntBASIC1.67□□□□□ -2.14
USP40Q9NVE5 RNU6-1254P-201ENST00000391266 104 ntBASIC1.67□□□□□ -2.14
USP40Q9NVE5 snoU13.18-201ENST00000459483 104 ntBASIC1.67□□□□□ -2.14
USP40Q9NVE5 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
USP40Q9NVE5 RNU6-580P-201ENST00000365159 107 ntBASIC1.66□□□□□ -2.14
USP40Q9NVE5 MT-TF-201ENST00000387314 71 ntBASIC1.66□□□□□ -2.14
USP40Q9NVE5 SNORD63B-201ENST00000411005 70 ntBASIC1.66□□□□□ -2.14
USP40Q9NVE5 AL606490.4-201ENST00000423117 127 ntBASIC1.66□□□□□ -2.14
USP40Q9NVE5 RNU6-947P-201ENST00000516264 106 ntBASIC1.66□□□□□ -2.14
USP40Q9NVE5 MIR2115-201ENST00000516657 100 ntBASIC1.66□□□□□ -2.14
USP40Q9NVE5 MIR377-201ENST00000362145 69 ntBASIC1.65□□□□□ -2.15
USP40Q9NVE5 SNORD33-201ENST00000362761 85 ntBASIC1.65□□□□□ -2.15
USP40Q9NVE5 RNU6-1065P-201ENST00000384513 106 ntBASIC1.65□□□□□ -2.15
USP40Q9NVE5 MIR635-201ENST00000384830 98 ntBASIC1.65□□□□□ -2.15
USP40Q9NVE5 MIR320A-201ENST00000385302 82 ntBASIC1.65□□□□□ -2.15
USP40Q9NVE5 TRAJ51-201ENST00000504127 63 ntBASIC1.65□□□□□ -2.15
USP40Q9NVE5 AC114801.3-201ENST00000510231 177 ntBASIC1.65□□□□□ -2.15
USP40Q9NVE5 MIR4484-201ENST00000582855 83 ntBASIC1.65□□□□□ -2.15
USP40Q9NVE5 MIR4536-1-201ENST00000583537 88 ntBASIC1.65□□□□□ -2.15
USP40Q9NVE5 AL357312.1-201ENST00000603879 298 ntBASIC1.65□□□□□ -2.15
USP40Q9NVE5 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.65□□□□□ -2.15
USP40Q9NVE5 RNA5SP264-201ENST00000363115 107 ntBASIC1.64□□□□□ -2.15
USP40Q9NVE5 RNU1-36P-201ENST00000365130 165 ntBASIC1.64□□□□□ -2.15
USP40Q9NVE5 FGF7P7-201ENST00000514120 227 ntBASIC1.64□□□□□ -2.15
USP40Q9NVE5 RNU6-165P-201ENST00000517170 99 ntBASIC1.64□□□□□ -2.15
USP40Q9NVE5 MIR4422-201ENST00000581938 83 ntBASIC1.64□□□□□ -2.15
USP40Q9NVE5 MIR664A-201ENST00000626086 82 ntBASIC1.64□□□□□ -2.15
USP40Q9NVE5 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
USP40Q9NVE5 MIR103A2-201ENST00000362154 78 ntBASIC1.63□□□□□ -2.15
USP40Q9NVE5 RNU6-53P-201ENST00000365367 106 ntBASIC1.63□□□□□ -2.15
USP40Q9NVE5 Y_RNA.491-201ENST00000384417 107 ntBASIC1.63□□□□□ -2.15
USP40Q9NVE5 RNU6-243P-201ENST00000391140 107 ntBASIC1.63□□□□□ -2.15
USP40Q9NVE5 RNU1-78P-201ENST00000391248 165 ntBASIC1.63□□□□□ -2.15
USP40Q9NVE5 SNORD100-201ENST00000408573 76 ntBASIC1.63□□□□□ -2.15
USP40Q9NVE5 RPS27P16-201ENST00000425758 201 ntBASIC1.63□□□□□ -2.15
USP40Q9NVE5 AC015818.7-201ENST00000428754 109 ntBASIC1.63□□□□□ -2.15
USP40Q9NVE5 AL133373.1-201ENST00000497098 94 ntBASIC1.63□□□□□ -2.15
USP40Q9NVE5 RNU6-1194P-201ENST00000516208 104 ntBASIC1.63□□□□□ -2.15
USP40Q9NVE5 RNU6-1015P-201ENST00000517121 99 ntBASIC1.63□□□□□ -2.15
USP40Q9NVE5 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
USP40Q9NVE5 RNU7-195P-201ENST00000458793 62 ntBASIC1.62□□□□□ -2.15
USP40Q9NVE5 snoU13.17-201ENST00000458802 104 ntBASIC1.62□□□□□ -2.15
USP40Q9NVE5 RNU1-123P-201ENST00000458950 160 ntBASIC1.62□□□□□ -2.15
USP40Q9NVE5 AC013244.2-201ENST00000603396 103 ntBASIC1.62□□□□□ -2.15
USP40Q9NVE5 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.62□□□□□ -2.15
USP40Q9NVE5 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.61□□□□□ -2.15
USP40Q9NVE5 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
USP40Q9NVE5 SNORD93-201ENST00000408813 74 ntBASIC1.61□□□□□ -2.15
USP40Q9NVE5 RNU11-2P-201ENST00000516898 142 ntBASIC1.61□□□□□ -2.15
USP40Q9NVE5 MIR4452-201ENST00000583004 71 ntBASIC1.61□□□□□ -2.15
USP40Q9NVE5 SNORD92-201ENST00000585078 85 ntBASIC1.61□□□□□ -2.15
USP40Q9NVE5 RNU4-58P-201ENST00000363192 141 ntBASIC1.6□□□□□ -2.15
USP40Q9NVE5 RNA5SP102-201ENST00000516865 106 ntBASIC1.6□□□□□ -2.15
USP40Q9NVE5 Y_RNA.13-201ENST00000362403 112 ntBASIC1.59□□□□□ -2.15
USP40Q9NVE5 RNU6-403P-201ENST00000363163 104 ntBASIC1.59□□□□□ -2.15
USP40Q9NVE5 Y_RNA.536-201ENST00000384621 113 ntBASIC1.59□□□□□ -2.15
USP40Q9NVE5 SNORD77.2-201ENST00000391045 68 ntBASIC1.59□□□□□ -2.15
USP40Q9NVE5 RNU6-466P-201ENST00000391224 103 ntBASIC1.59□□□□□ -2.15
USP40Q9NVE5 SNORD83.1-201ENST00000411362 77 ntBASIC1.59□□□□□ -2.15
USP40Q9NVE5 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.59□□□□□ -2.15
USP40Q9NVE5 MIR2113-201ENST00000459007 91 ntBASIC1.59□□□□□ -2.15
USP40Q9NVE5 RNU6-687P-201ENST00000516443 89 ntBASIC1.59□□□□□ -2.15
USP40Q9NVE5 AL512310.8-201ENST00000550183 120 ntBASIC1.59□□□□□ -2.15
USP40Q9NVE5 MIR6078-201ENST00000611069 100 ntBASIC1.59□□□□□ -2.15
USP40Q9NVE5 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.58□□□□□ -2.16
USP40Q9NVE5 AC074348.1-201ENST00000426503 132 ntBASIC1.58□□□□□ -2.16
USP40Q9NVE5 MIR18B-201ENST00000454574 71 ntBASIC1.58□□□□□ -2.16
USP40Q9NVE5 RNU7-185P-201ENST00000459215 60 ntBASIC1.58□□□□□ -2.16
USP40Q9NVE5 Y_RNA.660-201ENST00000516002 120 ntBASIC1.58□□□□□ -2.16
USP40Q9NVE5 RNU6-902P-201ENST00000517212 91 ntBASIC1.58□□□□□ -2.16
USP40Q9NVE5 MIR3664-201ENST00000579074 99 ntBASIC1.58□□□□□ -2.16
USP40Q9NVE5 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.58□□□□□ -2.16
USP40Q9NVE5 U6.100-201ENST00000636230 99 ntBASIC1.58□□□□□ -2.16
USP40Q9NVE5 AC023934.1-201ENST00000574529 2389 ntBASIC1.57□□□□□ -2.16
USP40Q9NVE5 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
USP40Q9NVE5 RNU6-330P-201ENST00000363015 107 ntBASIC1.57□□□□□ -2.16
USP40Q9NVE5 MIR519A1-201ENST00000385257 85 ntBASIC1.57□□□□□ -2.16
USP40Q9NVE5 RNU6-448P-201ENST00000517052 107 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 146.8 ms