Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RNU6-1163P-201ENST00000364516 107 ntBASIC1.05□□□□□ -2.24
TRIM39Q9HCM9 Y_RNA.495-201ENST00000384435 112 ntBASIC1.05□□□□□ -2.24
TRIM39Q9HCM9 RNU6-813P-201ENST00000384691 107 ntBASIC1.05□□□□□ -2.24
TRIM39Q9HCM9 AC092628.1-201ENST00000436250 252 ntBASIC1.05□□□□□ -2.24
TRIM39Q9HCM9 Y_RNA.705-201ENST00000516862 110 ntBASIC1.05□□□□□ -2.24
TRIM39Q9HCM9 RNU6-158P-201ENST00000517104 100 ntBASIC1.05□□□□□ -2.24
TRIM39Q9HCM9 RNU6-537P-201ENST00000517277 103 ntBASIC1.05□□□□□ -2.24
TRIM39Q9HCM9 MIR3612-201ENST00000579753 87 ntBASIC1.05□□□□□ -2.24
TRIM39Q9HCM9 SNORD63B-201ENST00000411005 70 ntBASIC1.04□□□□□ -2.24
TRIM39Q9HCM9 MTATP6P29-201ENST00000415057 132 ntBASIC1.04□□□□□ -2.24
TRIM39Q9HCM9 RNU6-795P-201ENST00000516323 103 ntBASIC1.04□□□□□ -2.24
TRIM39Q9HCM9 SNORA40.13-201ENST00000516379 120 ntBASIC1.04□□□□□ -2.24
TRIM39Q9HCM9 SNORD114-21-201ENST00000606412 72 ntBASIC1.04□□□□□ -2.24
TRIM39Q9HCM9 RNU6-86P-201ENST00000606534 107 ntBASIC1.04□□□□□ -2.24
TRIM39Q9HCM9 AC103810.9-201ENST00000606688 112 ntBASIC1.04□□□□□ -2.24
TRIM39Q9HCM9 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
TRIM39Q9HCM9 RNU6-1244P-201ENST00000363614 108 ntBASIC1.03□□□□□ -2.24
TRIM39Q9HCM9 MIR608-201ENST00000384820 100 ntBASIC1.03□□□□□ -2.24
TRIM39Q9HCM9 RNU6-972P-201ENST00000391208 107 ntBASIC1.03□□□□□ -2.24
TRIM39Q9HCM9 MIR1276-201ENST00000408707 83 ntBASIC1.03□□□□□ -2.24
TRIM39Q9HCM9 RNU6-109P-201ENST00000516364 107 ntBASIC1.03□□□□□ -2.24
TRIM39Q9HCM9 RNU6-184P-201ENST00000516514 107 ntBASIC1.03□□□□□ -2.24
TRIM39Q9HCM9 RNA5SP102-201ENST00000516865 106 ntBASIC1.03□□□□□ -2.24
TRIM39Q9HCM9 AC012531.4-201ENST00000616509 177 ntBASIC1.03□□□□□ -2.24
TRIM39Q9HCM9 uc_338.16-201ENST00000621804 95 ntBASIC1.03□□□□□ -2.24
TRIM39Q9HCM9 AC091304.10-201ENST00000641554 121 ntBASIC1.03□□□□□ -2.24
TRIM39Q9HCM9 Y_RNA.32-201ENST00000362589 110 ntBASIC1.02□□□□□ -2.25
TRIM39Q9HCM9 MIR519A1-201ENST00000385257 85 ntBASIC1.02□□□□□ -2.25
TRIM39Q9HCM9 RNU6-1254P-201ENST00000391266 104 ntBASIC1.02□□□□□ -2.25
TRIM39Q9HCM9 AC244098.3-201ENST00000424803 96 ntBASIC1.02□□□□□ -2.25
TRIM39Q9HCM9 AC097635.1-201ENST00000450678 155 ntBASIC1.02□□□□□ -2.25
TRIM39Q9HCM9 SNORA31.14-201ENST00000516728 116 ntBASIC1.02□□□□□ -2.25
TRIM39Q9HCM9 RNU6-243P-201ENST00000391140 107 ntBASIC1.01□□□□□ -2.25
TRIM39Q9HCM9 TRAJ51-201ENST00000504127 63 ntBASIC1.01□□□□□ -2.25
TRIM39Q9HCM9 MIR6504-201ENST00000613520 61 ntBASIC1.01□□□□□ -2.25
TRIM39Q9HCM9 AP001318.4-201ENST00000616637 121 ntBASIC1.01□□□□□ -2.25
TRIM39Q9HCM9 Y_RNA.809-201ENST00000516058 95 ntBASIC1□□□□□ -2.25
TRIM39Q9HCM9 RNU6-168P-201ENST00000516189 101 ntBASIC1□□□□□ -2.25
TRIM39Q9HCM9 Y_RNA.677-201ENST00000516401 85 ntBASIC1□□□□□ -2.25
TRIM39Q9HCM9 MIR4777-201ENST00000583710 86 ntBASIC1□□□□□ -2.25
TRIM39Q9HCM9 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1□□□□□ -2.25
TRIM39Q9HCM9 RNU6-1229P-201ENST00000364295 107 ntBASIC0.99□□□□□ -2.25
TRIM39Q9HCM9 RNU4-38P-201ENST00000364472 129 ntBASIC0.99□□□□□ -2.25
TRIM39Q9HCM9 RNU6-1187P-201ENST00000364771 110 ntBASIC0.99□□□□□ -2.25
TRIM39Q9HCM9 Y_RNA.466-201ENST00000384294 113 ntBASIC0.99□□□□□ -2.25
TRIM39Q9HCM9 Y_RNA.467-201ENST00000384297 102 ntBASIC0.99□□□□□ -2.25
TRIM39Q9HCM9 RNA5SP222-201ENST00000411039 105 ntBASIC0.99□□□□□ -2.25
TRIM39Q9HCM9 AC211469.2-201ENST00000605461 205 ntBASIC0.99□□□□□ -2.25
TRIM39Q9HCM9 Y_RNA.191-201ENST00000363972 113 ntBASIC0.98□□□□□ -2.25
TRIM39Q9HCM9 Y_RNA.224-201ENST00000364308 111 ntBASIC0.98□□□□□ -2.25
TRIM39Q9HCM9 MIR516A2-201ENST00000384888 90 ntBASIC0.98□□□□□ -2.25
TRIM39Q9HCM9 MIR181B2-201ENST00000385004 89 ntBASIC0.98□□□□□ -2.25
TRIM39Q9HCM9 MIR516A1-201ENST00000385033 90 ntBASIC0.98□□□□□ -2.25
TRIM39Q9HCM9 MIR599-201ENST00000385069 95 ntBASIC0.98□□□□□ -2.25
TRIM39Q9HCM9 RNU6-887P-201ENST00000410660 100 ntBASIC0.98□□□□□ -2.25
TRIM39Q9HCM9 MTATP8P2-201ENST00000435212 202 ntBASIC0.98□□□□□ -2.25
TRIM39Q9HCM9 AC244505.6-201ENST00000452829 130 ntBASIC0.98□□□□□ -2.25
TRIM39Q9HCM9 ACA64.5-201ENST00000516207 127 ntBASIC0.98□□□□□ -2.25
TRIM39Q9HCM9 AC103810.7-201ENST00000607821 91 ntBASIC0.98□□□□□ -2.25
TRIM39Q9HCM9 MIR18A-201ENST00000362310 71 ntBASIC0.97□□□□□ -2.25
TRIM39Q9HCM9 SNORD114-27-201ENST00000363766 70 ntBASIC0.97□□□□□ -2.25
TRIM39Q9HCM9 RNU6-110P-201ENST00000384508 104 ntBASIC0.97□□□□□ -2.25
TRIM39Q9HCM9 RNU7-195P-201ENST00000458793 62 ntBASIC0.97□□□□□ -2.25
TRIM39Q9HCM9 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.97□□□□□ -2.25
TRIM39Q9HCM9 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.97□□□□□ -2.25
TRIM39Q9HCM9 MIR96-201ENST00000362288 78 ntBASIC0.96□□□□□ -2.26
TRIM39Q9HCM9 RNU6-1260P-201ENST00000362944 107 ntBASIC0.96□□□□□ -2.26
TRIM39Q9HCM9 RNA5SP245-201ENST00000364239 121 ntBASIC0.96□□□□□ -2.26
TRIM39Q9HCM9 RNU7-61P-201ENST00000515897 61 ntBASIC0.96□□□□□ -2.26
TRIM39Q9HCM9 MIR3678-201ENST00000578455 94 ntBASIC0.96□□□□□ -2.26
TRIM39Q9HCM9 MIR4452-201ENST00000583004 71 ntBASIC0.96□□□□□ -2.26
TRIM39Q9HCM9 MIR644A-201ENST00000385262 94 ntBASIC0.95□□□□□ -2.26
TRIM39Q9HCM9 RNU6-644P-201ENST00000391155 98 ntBASIC0.95□□□□□ -2.26
TRIM39Q9HCM9 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.95□□□□□ -2.26
TRIM39Q9HCM9 RPL39P28-201ENST00000465655 155 ntBASIC0.95□□□□□ -2.26
TRIM39Q9HCM9 MIR548Z-201ENST00000584743 97 ntBASIC0.95□□□□□ -2.26
TRIM39Q9HCM9 SNORD114-22-201ENST00000365423 72 ntBASIC0.94□□□□□ -2.26
TRIM39Q9HCM9 RNA5SP89-201ENST00000410300 108 ntBASIC0.94□□□□□ -2.26
TRIM39Q9HCM9 RNU7-106P-201ENST00000459514 67 ntBASIC0.94□□□□□ -2.26
TRIM39Q9HCM9 MIR4639-201ENST00000584938 69 ntBASIC0.94□□□□□ -2.26
TRIM39Q9HCM9 SNORD115-24-201ENST00000363528 82 ntBASIC0.93□□□□□ -2.26
TRIM39Q9HCM9 SNORD116-10-201ENST00000363791 102 ntBASIC0.93□□□□□ -2.26
TRIM39Q9HCM9 RNU1-93P-201ENST00000364704 169 ntBASIC0.93□□□□□ -2.26
TRIM39Q9HCM9 Y_RNA.348-201ENST00000365403 103 ntBASIC0.93□□□□□ -2.26
TRIM39Q9HCM9 SNORA36.2-201ENST00000384004 127 ntBASIC0.93□□□□□ -2.26
TRIM39Q9HCM9 MIR532-201ENST00000385025 91 ntBASIC0.93□□□□□ -2.26
TRIM39Q9HCM9 PSMC1P5-201ENST00000512850 177 ntBASIC0.93□□□□□ -2.26
TRIM39Q9HCM9 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.93□□□□□ -2.26
TRIM39Q9HCM9 MIR6857-201ENST00000613267 93 ntBASIC0.93□□□□□ -2.26
TRIM39Q9HCM9 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.93□□□□□ -2.26
TRIM39Q9HCM9 SNORD36A-201ENST00000362874 73 ntBASIC0.92□□□□□ -2.26
TRIM39Q9HCM9 RNU6-466P-201ENST00000391224 103 ntBASIC0.92□□□□□ -2.26
TRIM39Q9HCM9 AL513043.2-201ENST00000573941 143 ntBASIC0.92□□□□□ -2.26
TRIM39Q9HCM9 MIR6767-201ENST00000637302 66 ntBASIC0.92□□□□□ -2.26
TRIM39Q9HCM9 AC025521.1-201ENST00000621624 286 ntBASIC0.91□□□□□ -2.26
TRIM39Q9HCM9 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.91□□□□□ -2.26
TRIM39Q9HCM9 SNORD18A-201ENST00000363753 72 ntBASIC0.9□□□□□ -2.27
TRIM39Q9HCM9 SNORD58A-201ENST00000383875 65 ntBASIC0.9□□□□□ -2.27
TRIM39Q9HCM9 RNU6-524P-201ENST00000384270 107 ntBASIC0.9□□□□□ -2.27
TRIM39Q9HCM9 U7.3-201ENST00000616123 62 ntBASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 168.8 ms