Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 RNU6-848P-201ENST00000515948 107 ntBASIC0.29□□□□□ -2.36
CCDC28BQ9BUN5 RNU6-617P-201ENST00000516147 107 ntBASIC0.29□□□□□ -2.36
CCDC28BQ9BUN5 RNU6-473P-201ENST00000516164 107 ntBASIC0.29□□□□□ -2.36
CCDC28BQ9BUN5 RNU6-1049P-201ENST00000516414 107 ntBASIC0.29□□□□□ -2.36
CCDC28BQ9BUN5 MIR7107-201ENST00000611489 80 ntBASIC0.29□□□□□ -2.36
CCDC28BQ9BUN5 MIR7111-201ENST00000619751 72 ntBASIC0.29□□□□□ -2.36
CCDC28BQ9BUN5 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.28□□□□□ -2.36
CCDC28BQ9BUN5 Y_RNA.49-201ENST00000362714 112 ntBASIC0.28□□□□□ -2.36
CCDC28BQ9BUN5 RNA5SP403-201ENST00000363598 108 ntBASIC0.28□□□□□ -2.36
CCDC28BQ9BUN5 Y_RNA.155-201ENST00000363632 101 ntBASIC0.28□□□□□ -2.36
CCDC28BQ9BUN5 SNORD38.1-201ENST00000363863 68 ntBASIC0.28□□□□□ -2.36
CCDC28BQ9BUN5 RNU6-1327P-201ENST00000365302 105 ntBASIC0.28□□□□□ -2.36
CCDC28BQ9BUN5 Y_RNA.342-201ENST00000365352 113 ntBASIC0.28□□□□□ -2.36
CCDC28BQ9BUN5 RNU6-81P-201ENST00000365608 104 ntBASIC0.28□□□□□ -2.36
CCDC28BQ9BUN5 RNU6-1126P-201ENST00000384002 107 ntBASIC0.28□□□□□ -2.36
CCDC28BQ9BUN5 MIR599-201ENST00000385069 95 ntBASIC0.28□□□□□ -2.36
CCDC28BQ9BUN5 MIR936-201ENST00000401264 98 ntBASIC0.28□□□□□ -2.36
CCDC28BQ9BUN5 TMSB4XP3-201ENST00000445144 114 ntBASIC0.28□□□□□ -2.36
CCDC28BQ9BUN5 Y_RNA.649-201ENST00000459077 103 ntBASIC0.28□□□□□ -2.36
CCDC28BQ9BUN5 RNU6-1006P-201ENST00000516998 103 ntBASIC0.28□□□□□ -2.36
CCDC28BQ9BUN5 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.28□□□□□ -2.36
CCDC28BQ9BUN5 RNU6-959P-201ENST00000384671 107 ntBASIC0.27□□□□□ -2.37
CCDC28BQ9BUN5 Y_RNA.563-201ENST00000384707 108 ntBASIC0.27□□□□□ -2.37
CCDC28BQ9BUN5 RNU6-816P-201ENST00000390914 107 ntBASIC0.27□□□□□ -2.37
CCDC28BQ9BUN5 RNU6-1268P-201ENST00000391214 107 ntBASIC0.27□□□□□ -2.37
CCDC28BQ9BUN5 RNU6-1239P-201ENST00000391310 107 ntBASIC0.27□□□□□ -2.37
CCDC28BQ9BUN5 SNORD63B-201ENST00000411005 70 ntBASIC0.27□□□□□ -2.37
CCDC28BQ9BUN5 AL353813.1-201ENST00000440700 253 ntBASIC0.27□□□□□ -2.37
CCDC28BQ9BUN5 RNA5SP436-201ENST00000516020 115 ntBASIC0.27□□□□□ -2.37
CCDC28BQ9BUN5 RNA5SP134-201ENST00000516492 96 ntBASIC0.27□□□□□ -2.37
CCDC28BQ9BUN5 RNU6-850P-201ENST00000516934 103 ntBASIC0.27□□□□□ -2.37
CCDC28BQ9BUN5 MTND5P40-201ENST00000559945 246 ntBASIC0.27□□□□□ -2.37
CCDC28BQ9BUN5 AC007012.1-201ENST00000567192 175 ntBASIC0.27□□□□□ -2.37
CCDC28BQ9BUN5 AC243829.6-201ENST00000612652 106 ntBASIC0.27□□□□□ -2.37
CCDC28BQ9BUN5 Y_RNA.35-201ENST00000362601 101 ntBASIC0.26□□□□□ -2.37
CCDC28BQ9BUN5 RNU6-1260P-201ENST00000362944 107 ntBASIC0.26□□□□□ -2.37
CCDC28BQ9BUN5 SNORD114-23-201ENST00000363536 72 ntBASIC0.26□□□□□ -2.37
CCDC28BQ9BUN5 Y_RNA.377-201ENST00000365644 108 ntBASIC0.26□□□□□ -2.37
CCDC28BQ9BUN5 Y_RNA.525-201ENST00000384570 113 ntBASIC0.26□□□□□ -2.37
CCDC28BQ9BUN5 Y_RNA.809-201ENST00000516058 95 ntBASIC0.26□□□□□ -2.37
CCDC28BQ9BUN5 RNU7-161P-201ENST00000517289 62 ntBASIC0.26□□□□□ -2.37
CCDC28BQ9BUN5 MIR4711-201ENST00000578274 70 ntBASIC0.26□□□□□ -2.37
CCDC28BQ9BUN5 MIR5093-201ENST00000583199 100 ntBASIC0.26□□□□□ -2.37
CCDC28BQ9BUN5 AL670379.3-201ENST00000605040 251 ntBASIC0.26□□□□□ -2.37
CCDC28BQ9BUN5 RNU6-90P-201ENST00000606352 106 ntBASIC0.26□□□□□ -2.37
CCDC28BQ9BUN5 Y_RNA.36-201ENST00000362602 112 ntBASIC0.25□□□□□ -2.37
CCDC28BQ9BUN5 RNU6-726P-201ENST00000364680 107 ntBASIC0.25□□□□□ -2.37
CCDC28BQ9BUN5 RNU6-1201P-201ENST00000384227 107 ntBASIC0.25□□□□□ -2.37
CCDC28BQ9BUN5 RNY1P4-201ENST00000384595 115 ntBASIC0.25□□□□□ -2.37
CCDC28BQ9BUN5 MIR548A3-201ENST00000385297 97 ntBASIC0.25□□□□□ -2.37
CCDC28BQ9BUN5 MIR548G-201ENST00000408442 89 ntBASIC0.25□□□□□ -2.37
CCDC28BQ9BUN5 AC008267.6-201ENST00000441664 139 ntBASIC0.25□□□□□ -2.37
CCDC28BQ9BUN5 RN7SL793P-201ENST00000583259 296 ntBASIC0.25□□□□□ -2.37
CCDC28BQ9BUN5 AL442128.1-201ENST00000615151 90 ntBASIC0.25□□□□□ -2.37
CCDC28BQ9BUN5 PVT1_3.1-201ENST00000620853 95 ntBASIC0.25□□□□□ -2.37
CCDC28BQ9BUN5 AC067863.3-201ENST00000624172 122 ntBASIC0.25□□□□□ -2.37
CCDC28BQ9BUN5 SNORD41.1-201ENST00000391000 69 ntBASIC0.24□□□□□ -2.37
CCDC28BQ9BUN5 MIR548L-201ENST00000408303 86 ntBASIC0.24□□□□□ -2.37
CCDC28BQ9BUN5 AC108740.1-201ENST00000498629 225 ntBASIC0.24□□□□□ -2.37
CCDC28BQ9BUN5 SNORD33.1-201ENST00000516213 88 ntBASIC0.24□□□□□ -2.37
CCDC28BQ9BUN5 MIR4694-201ENST00000578534 80 ntBASIC0.24□□□□□ -2.37
CCDC28BQ9BUN5 AC096720.1-201ENST00000604441 183 ntBASIC0.24□□□□□ -2.37
CCDC28BQ9BUN5 MIR103A1-201ENST00000362165 78 ntBASIC0.23□□□□□ -2.37
CCDC28BQ9BUN5 Y_RNA.173-201ENST00000363776 113 ntBASIC0.23□□□□□ -2.37
CCDC28BQ9BUN5 Y_RNA.353-201ENST00000365440 108 ntBASIC0.23□□□□□ -2.37
CCDC28BQ9BUN5 VTRNA1-3-201ENST00000365645 89 ntBASIC0.23□□□□□ -2.37
CCDC28BQ9BUN5 AC069271.1-201ENST00000445577 156 ntBASIC0.23□□□□□ -2.37
CCDC28BQ9BUN5 SPINT5P-201ENST00000448174 155 ntBASIC0.23□□□□□ -2.37
CCDC28BQ9BUN5 RNU7-195P-201ENST00000458793 62 ntBASIC0.23□□□□□ -2.37
CCDC28BQ9BUN5 RNU7-104P-201ENST00000459398 79 ntBASIC0.23□□□□□ -2.37
CCDC28BQ9BUN5 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.23□□□□□ -2.37
CCDC28BQ9BUN5 RNU6-1333P-201ENST00000516162 93 ntBASIC0.23□□□□□ -2.37
CCDC28BQ9BUN5 AL035470.1-201ENST00000622571 220 ntBASIC0.23□□□□□ -2.37
CCDC28BQ9BUN5 Y_RNA.221-201ENST00000364248 96 ntBASIC0.22□□□□□ -2.37
CCDC28BQ9BUN5 RNU6-716P-201ENST00000365621 103 ntBASIC0.22□□□□□ -2.37
CCDC28BQ9BUN5 MIR548A1-201ENST00000385041 97 ntBASIC0.22□□□□□ -2.37
CCDC28BQ9BUN5 RNU6-1254P-201ENST00000391266 104 ntBASIC0.22□□□□□ -2.37
CCDC28BQ9BUN5 RNU7-106P-201ENST00000459514 67 ntBASIC0.22□□□□□ -2.37
CCDC28BQ9BUN5 AC068339.1-201ENST00000526965 141 ntBASIC0.22□□□□□ -2.37
CCDC28BQ9BUN5 AL162376.1-201ENST00000624117 175 ntBASIC0.22□□□□□ -2.37
CCDC28BQ9BUN5 AC010487.4-201ENST00000637027 61 ntBASIC0.22□□□□□ -2.37
CCDC28BQ9BUN5 RNA5SP62-201ENST00000363457 110 ntBASIC0.21□□□□□ -2.38
CCDC28BQ9BUN5 Y_RNA.247-201ENST00000364500 92 ntBASIC0.21□□□□□ -2.38
CCDC28BQ9BUN5 Y_RNA.281-201ENST00000364774 94 ntBASIC0.21□□□□□ -2.38
CCDC28BQ9BUN5 MIR516A2-201ENST00000384888 90 ntBASIC0.21□□□□□ -2.38
CCDC28BQ9BUN5 MIR193B-201ENST00000384907 83 ntBASIC0.21□□□□□ -2.38
CCDC28BQ9BUN5 MIR516A1-201ENST00000385033 90 ntBASIC0.21□□□□□ -2.38
CCDC28BQ9BUN5 AL603908.1-201ENST00000406098 201 ntBASIC0.21□□□□□ -2.38
CCDC28BQ9BUN5 RNA5SP480-201ENST00000516840 109 ntBASIC0.21□□□□□ -2.38
CCDC28BQ9BUN5 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.21□□□□□ -2.38
CCDC28BQ9BUN5 Y_RNA.57-201ENST00000362806 113 ntBASIC0.2□□□□□ -2.38
CCDC28BQ9BUN5 RNY3P2-201ENST00000362918 102 ntBASIC0.2□□□□□ -2.38
CCDC28BQ9BUN5 Y_RNA.323-201ENST00000365157 109 ntBASIC0.2□□□□□ -2.38
CCDC28BQ9BUN5 RNU6-880P-201ENST00000384526 107 ntBASIC0.2□□□□□ -2.38
CCDC28BQ9BUN5 Y_RNA.549-201ENST00000384657 102 ntBASIC0.2□□□□□ -2.38
CCDC28BQ9BUN5 MIR577-201ENST00000385196 96 ntBASIC0.2□□□□□ -2.38
CCDC28BQ9BUN5 RNA5SP193-201ENST00000410353 107 ntBASIC0.2□□□□□ -2.38
CCDC28BQ9BUN5 RNU6-1265P-201ENST00000516342 103 ntBASIC0.2□□□□□ -2.38
CCDC28BQ9BUN5 RNU6-412P-201ENST00000516434 106 ntBASIC0.2□□□□□ -2.38
CCDC28BQ9BUN5 AC069113.3-201ENST00000521019 150 ntBASIC0.2□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 392.9 ms