Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 MIR508-201ENST00000384857 115 ntBASIC0.74□□□□□ -2.29
HPS3Q969F9 RNU6-1064P-201ENST00000410626 104 ntBASIC0.74□□□□□ -2.29
HPS3Q969F9 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.74□□□□□ -2.29
HPS3Q969F9 AC068339.1-201ENST00000526965 141 ntBASIC0.74□□□□□ -2.29
HPS3Q969F9 MIR1273G-201ENST00000577677 100 ntBASIC0.74□□□□□ -2.29
HPS3Q969F9 SNORD38.1-201ENST00000363863 68 ntBASIC0.73□□□□□ -2.29
HPS3Q969F9 RNU6-1144P-201ENST00000384247 104 ntBASIC0.73□□□□□ -2.29
HPS3Q969F9 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.73□□□□□ -2.29
HPS3Q969F9 AC096720.1-201ENST00000604441 183 ntBASIC0.73□□□□□ -2.29
HPS3Q969F9 SNORD114-23-201ENST00000363536 72 ntBASIC0.72□□□□□ -2.29
HPS3Q969F9 Y_RNA.281-201ENST00000364774 94 ntBASIC0.72□□□□□ -2.29
HPS3Q969F9 RNU6-1056P-201ENST00000383996 107 ntBASIC0.72□□□□□ -2.29
HPS3Q969F9 RNU6-1081P-201ENST00000384537 107 ntBASIC0.72□□□□□ -2.29
HPS3Q969F9 AC092628.1-201ENST00000436250 252 ntBASIC0.72□□□□□ -2.29
HPS3Q969F9 SPINT5P-201ENST00000448174 155 ntBASIC0.72□□□□□ -2.29
HPS3Q969F9 RNU6-90P-201ENST00000606352 106 ntBASIC0.72□□□□□ -2.29
HPS3Q969F9 AL442128.1-201ENST00000615151 90 ntBASIC0.72□□□□□ -2.29
HPS3Q969F9 RNY1P8-201ENST00000383970 114 ntBASIC0.71□□□□□ -2.3
HPS3Q969F9 Y_RNA.567-201ENST00000384736 106 ntBASIC0.71□□□□□ -2.3
HPS3Q969F9 RNA5SP94-201ENST00000516917 108 ntBASIC0.71□□□□□ -2.3
HPS3Q969F9 AC018659.1-201ENST00000551083 169 ntBASIC0.71□□□□□ -2.3
HPS3Q969F9 MIR5009-201ENST00000578736 100 ntBASIC0.71□□□□□ -2.3
HPS3Q969F9 AC092634.7-201ENST00000621022 103 ntBASIC0.71□□□□□ -2.3
HPS3Q969F9 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.71□□□□□ -2.3
HPS3Q969F9 AC010487.4-201ENST00000637027 61 ntBASIC0.71□□□□□ -2.3
HPS3Q969F9 RNA5SP347-201ENST00000362445 119 ntBASIC0.7□□□□□ -2.3
HPS3Q969F9 RNU6-170P-201ENST00000362832 104 ntBASIC0.7□□□□□ -2.3
HPS3Q969F9 SNORD18A-201ENST00000363753 72 ntBASIC0.7□□□□□ -2.3
HPS3Q969F9 RNA5SP245-201ENST00000364239 121 ntBASIC0.7□□□□□ -2.3
HPS3Q969F9 U8.6-201ENST00000364939 135 ntBASIC0.7□□□□□ -2.3
HPS3Q969F9 RNU6-1201P-201ENST00000384227 107 ntBASIC0.7□□□□□ -2.3
HPS3Q969F9 MIR936-201ENST00000401264 98 ntBASIC0.7□□□□□ -2.3
HPS3Q969F9 AL353813.1-201ENST00000440700 253 ntBASIC0.7□□□□□ -2.3
HPS3Q969F9 MIR4639-201ENST00000584938 69 ntBASIC0.7□□□□□ -2.3
HPS3Q969F9 Y_RNA.35-201ENST00000362601 101 ntBASIC0.69□□□□□ -2.3
HPS3Q969F9 Y_RNA.377-201ENST00000365644 108 ntBASIC0.69□□□□□ -2.3
HPS3Q969F9 SNORA19-201ENST00000384737 128 ntBASIC0.69□□□□□ -2.3
HPS3Q969F9 MIR548G-201ENST00000408442 89 ntBASIC0.69□□□□□ -2.3
HPS3Q969F9 SNRPGP12-201ENST00000449481 213 ntBASIC0.69□□□□□ -2.3
HPS3Q969F9 RNA5SP121-201ENST00000516537 101 ntBASIC0.69□□□□□ -2.3
HPS3Q969F9 RNU6-850P-201ENST00000516934 103 ntBASIC0.69□□□□□ -2.3
HPS3Q969F9 MIR4694-201ENST00000578534 80 ntBASIC0.69□□□□□ -2.3
HPS3Q969F9 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
HPS3Q969F9 Y_RNA.342-201ENST00000365352 113 ntBASIC0.68□□□□□ -2.3
HPS3Q969F9 AC244505.6-201ENST00000452829 130 ntBASIC0.68□□□□□ -2.3
HPS3Q969F9 RNU6-1006P-201ENST00000516998 103 ntBASIC0.68□□□□□ -2.3
HPS3Q969F9 MIR924-201ENST00000638017 53 ntBASIC0.68□□□□□ -2.3
HPS3Q969F9 RNA5SP499-201ENST00000363982 119 ntBASIC0.67□□□□□ -2.3
HPS3Q969F9 RNU6-945P-201ENST00000383947 107 ntBASIC0.67□□□□□ -2.3
HPS3Q969F9 TRAJ51-201ENST00000504127 63 ntBASIC0.67□□□□□ -2.3
HPS3Q969F9 RNU4-54P-201ENST00000516428 129 ntBASIC0.67□□□□□ -2.3
HPS3Q969F9 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.67□□□□□ -2.3
HPS3Q969F9 RNY3P2-201ENST00000362918 102 ntBASIC0.66□□□□□ -2.3
HPS3Q969F9 RNU6-1107P-201ENST00000364817 104 ntBASIC0.66□□□□□ -2.3
HPS3Q969F9 Y_RNA.323-201ENST00000365157 109 ntBASIC0.66□□□□□ -2.3
HPS3Q969F9 SNORD28-201ENST00000384706 75 ntBASIC0.66□□□□□ -2.3
HPS3Q969F9 MIR577-201ENST00000385196 96 ntBASIC0.66□□□□□ -2.3
HPS3Q969F9 SNORD63B-201ENST00000411005 70 ntBASIC0.66□□□□□ -2.3
HPS3Q969F9 SNORD71-201ENST00000411292 86 ntBASIC0.66□□□□□ -2.3
HPS3Q969F9 AC097635.1-201ENST00000450678 155 ntBASIC0.66□□□□□ -2.3
HPS3Q969F9 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.66□□□□□ -2.3
HPS3Q969F9 RNU6-832P-201ENST00000363319 107 ntBASIC0.65□□□□□ -2.31
HPS3Q969F9 SNORD115-24-201ENST00000363528 82 ntBASIC0.65□□□□□ -2.31
HPS3Q969F9 RNA5SP457-201ENST00000363657 124 ntBASIC0.65□□□□□ -2.31
HPS3Q969F9 Y_RNA.273-201ENST00000364703 102 ntBASIC0.65□□□□□ -2.31
HPS3Q969F9 MIR519A1-201ENST00000385257 85 ntBASIC0.65□□□□□ -2.31
HPS3Q969F9 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.65□□□□□ -2.31
HPS3Q969F9 RN7SKP12-201ENST00000516275 143 ntBASIC0.65□□□□□ -2.31
HPS3Q969F9 SCARNA16.5-201ENST00000517114 183 ntBASIC0.65□□□□□ -2.31
HPS3Q969F9 RNA5SP47-201ENST00000517230 109 ntBASIC0.65□□□□□ -2.31
HPS3Q969F9 AC141557.1-201ENST00000540982 400 ntBASIC0.65□□□□□ -2.31
HPS3Q969F9 U2.22-201ENST00000636441 106 ntBASIC0.65□□□□□ -2.31
HPS3Q969F9 Y_RNA.247-201ENST00000364500 92 ntBASIC0.64□□□□□ -2.31
HPS3Q969F9 RNA5SP517-201ENST00000364724 117 ntBASIC0.64□□□□□ -2.31
HPS3Q969F9 RNU6-1014P-201ENST00000383940 103 ntBASIC0.64□□□□□ -2.31
HPS3Q969F9 MIR599-201ENST00000385069 95 ntBASIC0.64□□□□□ -2.31
HPS3Q969F9 SNORA40.8-201ENST00000411034 126 ntBASIC0.64□□□□□ -2.31
HPS3Q969F9 MIR548AI-201ENST00000579940 88 ntBASIC0.64□□□□□ -2.31
HPS3Q969F9 MIR6129-201ENST00000616087 109 ntBASIC0.64□□□□□ -2.31
HPS3Q969F9 AC244669.1-204ENST00000621564 178 ntBASIC0.64□□□□□ -2.31
HPS3Q969F9 MIR5087-201ENST00000635826 76 ntBASIC0.64□□□□□ -2.31
HPS3Q969F9 Y_RNA.10-201ENST00000362371 110 ntBASIC0.63□□□□□ -2.31
HPS3Q969F9 Y_RNA.809-201ENST00000516058 95 ntBASIC0.63□□□□□ -2.31
HPS3Q969F9 RNA5SP268-201ENST00000516828 124 ntBASIC0.63□□□□□ -2.31
HPS3Q969F9 MIR4711-201ENST00000578274 70 ntBASIC0.63□□□□□ -2.31
HPS3Q969F9 uc_338.17-201ENST00000619633 179 ntBASIC0.63□□□□□ -2.31
HPS3Q969F9 AC091304.10-201ENST00000641554 121 ntBASIC0.63□□□□□ -2.31
HPS3Q969F9 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
HPS3Q969F9 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.63□□□□□ -2.31
HPS3Q969F9 RNU6-1099P-201ENST00000363533 107 ntBASIC0.62□□□□□ -2.31
HPS3Q969F9 RNU4-36P-201ENST00000364294 144 ntBASIC0.62□□□□□ -2.31
HPS3Q969F9 Y_RNA.374-201ENST00000365606 101 ntBASIC0.62□□□□□ -2.31
HPS3Q969F9 SNORA8.2-201ENST00000384372 139 ntBASIC0.62□□□□□ -2.31
HPS3Q969F9 MIR92A1-201ENST00000385233 78 ntBASIC0.62□□□□□ -2.31
HPS3Q969F9 Y_RNA.659-201ENST00000515994 113 ntBASIC0.62□□□□□ -2.31
HPS3Q969F9 RNA5SP227-201ENST00000516184 113 ntBASIC0.62□□□□□ -2.31
HPS3Q969F9 AC243829.3-201ENST00000622177 108 ntBASIC0.62□□□□□ -2.31
HPS3Q969F9 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.62□□□□□ -2.31
HPS3Q969F9 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.62□□□□□ -2.31
HPS3Q969F9 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 169 ms