Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 RNU6-364P-201ENST00000384387 107 ntBASIC1.6□□□□□ -2.15
UBE3DQ7Z6J8 RNU6-910P-201ENST00000390844 107 ntBASIC1.6□□□□□ -2.15
UBE3DQ7Z6J8 RNU7-40P-201ENST00000516397 64 ntBASIC1.6□□□□□ -2.15
UBE3DQ7Z6J8 SNORA18.5-201ENST00000516616 101 ntBASIC1.6□□□□□ -2.15
UBE3DQ7Z6J8 MIR4255-201ENST00000579351 72 ntBASIC1.6□□□□□ -2.15
UBE3DQ7Z6J8 AL645939.4-201ENST00000604495 135 ntBASIC1.6□□□□□ -2.15
UBE3DQ7Z6J8 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
UBE3DQ7Z6J8 Y_RNA.264-201ENST00000364665 102 ntBASIC1.59□□□□□ -2.15
UBE3DQ7Z6J8 RNU6-686P-201ENST00000364839 107 ntBASIC1.59□□□□□ -2.15
UBE3DQ7Z6J8 RNU6-994P-201ENST00000410507 111 ntBASIC1.59□□□□□ -2.15
UBE3DQ7Z6J8 AC027335.2-201ENST00000624030 375 ntBASIC1.59□□□□□ -2.15
UBE3DQ7Z6J8 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
UBE3DQ7Z6J8 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
UBE3DQ7Z6J8 RNU6-132P-201ENST00000383863 107 ntBASIC1.58□□□□□ -2.16
UBE3DQ7Z6J8 MIR504-201ENST00000385065 83 ntBASIC1.58□□□□□ -2.16
UBE3DQ7Z6J8 RNA5SP292-201ENST00000390974 118 ntBASIC1.58□□□□□ -2.16
UBE3DQ7Z6J8 AC023827.1-201ENST00000569247 97 ntBASIC1.58□□□□□ -2.16
UBE3DQ7Z6J8 AC145423.2-201ENST00000610631 239 ntBASIC1.58□□□□□ -2.16
UBE3DQ7Z6J8 TRDV1-202ENST00000621643 102 ntBASIC1.58□□□□□ -2.16
UBE3DQ7Z6J8 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
UBE3DQ7Z6J8 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.57□□□□□ -2.16
UBE3DQ7Z6J8 RNU6-478P-201ENST00000363904 110 ntBASIC1.57□□□□□ -2.16
UBE3DQ7Z6J8 AC067940.1-201ENST00000458411 300 ntBASIC1.57□□□□□ -2.16
UBE3DQ7Z6J8 SNORA70.22-201ENST00000517160 124 ntBASIC1.57□□□□□ -2.16
UBE3DQ7Z6J8 MIRLET7A1-201ENST00000362295 80 ntBASIC1.56□□□□□ -2.16
UBE3DQ7Z6J8 MIR4804-201ENST00000581683 73 ntBASIC1.56□□□□□ -2.16
UBE3DQ7Z6J8 MTRNR2L2-201ENST00000604882 87 ntBASIC1.56□□□□□ -2.16
UBE3DQ7Z6J8 RNU6-369P-201ENST00000362515 102 ntBASIC1.55□□□□□ -2.16
UBE3DQ7Z6J8 Y_RNA.239-201ENST00000364444 113 ntBASIC1.55□□□□□ -2.16
UBE3DQ7Z6J8 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
UBE3DQ7Z6J8 RNU6-535P-201ENST00000384722 107 ntBASIC1.55□□□□□ -2.16
UBE3DQ7Z6J8 MIR599-201ENST00000385069 95 ntBASIC1.55□□□□□ -2.16
UBE3DQ7Z6J8 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.55□□□□□ -2.16
UBE3DQ7Z6J8 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.55□□□□□ -2.16
UBE3DQ7Z6J8 AL450471.1-201ENST00000447509 127 ntBASIC1.55□□□□□ -2.16
UBE3DQ7Z6J8 AC244505.6-201ENST00000452829 130 ntBASIC1.55□□□□□ -2.16
UBE3DQ7Z6J8 RNU6-977P-201ENST00000516411 103 ntBASIC1.55□□□□□ -2.16
UBE3DQ7Z6J8 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
UBE3DQ7Z6J8 MIR1-1-201ENST00000362147 71 ntBASIC1.54□□□□□ -2.16
UBE3DQ7Z6J8 RNY4P3-201ENST00000365254 95 ntBASIC1.54□□□□□ -2.16
UBE3DQ7Z6J8 RNU6-291P-201ENST00000384720 107 ntBASIC1.54□□□□□ -2.16
UBE3DQ7Z6J8 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.54□□□□□ -2.16
UBE3DQ7Z6J8 SNORD77.2-201ENST00000391045 68 ntBASIC1.54□□□□□ -2.16
UBE3DQ7Z6J8 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
UBE3DQ7Z6J8 RNU7-102P-201ENST00000458948 62 ntBASIC1.54□□□□□ -2.16
UBE3DQ7Z6J8 RNU6-1265P-201ENST00000516342 103 ntBASIC1.54□□□□□ -2.16
UBE3DQ7Z6J8 SNORA25.15-201ENST00000516487 89 ntBASIC1.54□□□□□ -2.16
UBE3DQ7Z6J8 AC008608.1-201ENST00000603910 127 ntBASIC1.54□□□□□ -2.16
UBE3DQ7Z6J8 U7.4-201ENST00000614961 63 ntBASIC1.54□□□□□ -2.16
UBE3DQ7Z6J8 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.54□□□□□ -2.16
UBE3DQ7Z6J8 MIRLET7F1-201ENST00000362202 87 ntBASIC1.53□□□□□ -2.16
UBE3DQ7Z6J8 Y_RNA.174-201ENST00000363781 105 ntBASIC1.53□□□□□ -2.16
UBE3DQ7Z6J8 SNORD101-201ENST00000384027 73 ntBASIC1.53□□□□□ -2.16
UBE3DQ7Z6J8 MIR764-201ENST00000390811 85 ntBASIC1.53□□□□□ -2.16
UBE3DQ7Z6J8 RNU1-119P-201ENST00000391122 165 ntBASIC1.53□□□□□ -2.16
UBE3DQ7Z6J8 MIR1827-201ENST00000408549 66 ntBASIC1.53□□□□□ -2.16
UBE3DQ7Z6J8 Y_RNA.596-201ENST00000410462 109 ntBASIC1.53□□□□□ -2.16
UBE3DQ7Z6J8 AC015818.7-201ENST00000428754 109 ntBASIC1.53□□□□□ -2.16
UBE3DQ7Z6J8 AC073261.1-201ENST00000429409 121 ntBASIC1.53□□□□□ -2.16
UBE3DQ7Z6J8 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.53□□□□□ -2.16
UBE3DQ7Z6J8 MIR502-201ENST00000606349 86 ntBASIC1.53□□□□□ -2.16
UBE3DQ7Z6J8 MIR1297-201ENST00000637311 77 ntBASIC1.53□□□□□ -2.16
UBE3DQ7Z6J8 RNU6-664P-201ENST00000362381 107 ntBASIC1.52□□□□□ -2.17
UBE3DQ7Z6J8 RNU5F-1-201ENST00000362507 117 ntBASIC1.52□□□□□ -2.17
UBE3DQ7Z6J8 MIR100-201ENST00000385259 80 ntBASIC1.52□□□□□ -2.17
UBE3DQ7Z6J8 RNU7-56P-201ENST00000458744 62 ntBASIC1.52□□□□□ -2.17
UBE3DQ7Z6J8 MIR4285-201ENST00000581001 85 ntBASIC1.52□□□□□ -2.17
UBE3DQ7Z6J8 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
UBE3DQ7Z6J8 RNA5SP363-201ENST00000365072 115 ntBASIC1.51□□□□□ -2.17
UBE3DQ7Z6J8 RNA5SP190-201ENST00000365222 118 ntBASIC1.51□□□□□ -2.17
UBE3DQ7Z6J8 MIR520H-201ENST00000385126 88 ntBASIC1.51□□□□□ -2.17
UBE3DQ7Z6J8 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.51□□□□□ -2.17
UBE3DQ7Z6J8 AL591806.2-201ENST00000433122 173 ntBASIC1.51□□□□□ -2.17
UBE3DQ7Z6J8 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.51□□□□□ -2.17
UBE3DQ7Z6J8 RNU6-807P-201ENST00000516805 107 ntBASIC1.51□□□□□ -2.17
UBE3DQ7Z6J8 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.51□□□□□ -2.17
UBE3DQ7Z6J8 SNORD115-44-201ENST00000365391 82 ntBASIC1.5□□□□□ -2.17
UBE3DQ7Z6J8 RNU6-997P-201ENST00000384725 107 ntBASIC1.5□□□□□ -2.17
UBE3DQ7Z6J8 MIR4696-201ENST00000581431 70 ntBASIC1.5□□□□□ -2.17
UBE3DQ7Z6J8 MIR4298-201ENST00000584380 73 ntBASIC1.5□□□□□ -2.17
UBE3DQ7Z6J8 AL136317.1-201ENST00000612653 226 ntBASIC1.5□□□□□ -2.17
UBE3DQ7Z6J8 RNU6-208P-201ENST00000362431 107 ntBASIC1.49□□□□□ -2.17
UBE3DQ7Z6J8 RNU6-161P-201ENST00000363051 106 ntBASIC1.49□□□□□ -2.17
UBE3DQ7Z6J8 RNU6-1229P-201ENST00000364295 107 ntBASIC1.49□□□□□ -2.17
UBE3DQ7Z6J8 Y_RNA.545-201ENST00000384652 105 ntBASIC1.49□□□□□ -2.17
UBE3DQ7Z6J8 RNU6-935P-201ENST00000410371 100 ntBASIC1.49□□□□□ -2.17
UBE3DQ7Z6J8 SNORD13-201ENST00000459299 104 ntBASIC1.49□□□□□ -2.17
UBE3DQ7Z6J8 MIR4781-201ENST00000585250 76 ntBASIC1.49□□□□□ -2.17
UBE3DQ7Z6J8 U6.100-201ENST00000636230 99 ntBASIC1.49□□□□□ -2.17
UBE3DQ7Z6J8 RNU6-1051P-201ENST00000365471 102 ntBASIC1.48□□□□□ -2.17
UBE3DQ7Z6J8 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
UBE3DQ7Z6J8 AL606490.4-201ENST00000423117 127 ntBASIC1.48□□□□□ -2.17
UBE3DQ7Z6J8 RNU6-135P-201ENST00000516769 101 ntBASIC1.48□□□□□ -2.17
UBE3DQ7Z6J8 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.48□□□□□ -2.17
UBE3DQ7Z6J8 SNORA25-201ENST00000384384 134 ntBASIC1.47□□□□□ -2.17
UBE3DQ7Z6J8 MIR222-201ENST00000384992 110 ntBASIC1.47□□□□□ -2.17
UBE3DQ7Z6J8 MIR1323-201ENST00000408090 73 ntBASIC1.47□□□□□ -2.17
UBE3DQ7Z6J8 RNU6-1108P-201ENST00000516308 104 ntBASIC1.47□□□□□ -2.17
UBE3DQ7Z6J8 FAS-AS1.1-201ENST00000615327 126 ntBASIC1.47□□□□□ -2.17
UBE3DQ7Z6J8 RNU1-17P-201ENST00000363022 152 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 194.4 ms